NO14G02500.1, NO14G02500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02500.1
Unique NameNO14G02500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1243
Alignment locationchr14:755621..757415 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:755621..757415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G02500.1 vs.
Match: EWM24561.1 (40s ribosomal protein s10 [Nannochloropsis gaditana])

HSP 1 Score: 287.0 bits (733), Expect = 3.800e-74
Identity = 145/162 (89.51%), Postives = 152/162 (93.83%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNREGGYRG 163
            MFITKKNRLAVYHNLFKEGVLVAKKD YSVW+YKSP+G+ DL LPNLEV+NL+KSLKSSGYVKETFNWQ+ YYYLT EGI+YLRQYLNLPQDVVPQTHSKKEGRPARPAGF ERGDRPEG  ERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNRE  YRG
Sbjct:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEG--ERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNRE--YRG 256
The following BLAST results are available for this feature:
BLAST of NO14G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24561.13.800e-7489.5140s ribosomal protein s10 [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02500NO14G02500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02500.1NO14G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02500.1.cds1NO14G02500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02500.1.cds2NO14G02500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02500.1.cds3NO14G02500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02500.1.cds4NO14G02500.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02500.1 ID=NO14G02500.1|Name=NO14G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp
CCCAGTGCATCAGAACGAAAACGTGAACGGTTGGTGGGAGTCTTCCGGTG
GCAATGGTACATGAAGTAAGGGCCTTGAGCAGCGCACTATATTGGATGTA
TGCGATGTAGGAGTGTGTGACAAGGGGATCGAAGGAGTTTTGGTAGTGCT
AACCACCTTAAACGGTGTTAGCCACTCGCCCCTCACTCCCCCTCGCCTTC
TCACCACTCACGCGGCTCCTCTCCAGCTTTTTCTTCCCTCCTTTCCACTC
CCACGCTGTATACCTTGCTTGGGGGCGAAGTAATGGACATTCGTGTCTAT
GGATAATTCCCTCAGGCATATTTATGCAGCATGCTGGGCTGGTGTCGTGG
TAGATTTGTGCGGCTCATGAGATTAACCCCTCCAGACCACCCCCATCCAT
CATTACCCCTTTGACCCACGTCATTCTCCCTCCATTTTATATAGGTCTAG
CTTCCTTTTGGAGGGTTACTAGCCAGTCGGACAGAGCATCATGTTCATCA
CCAAGAAGAACCGCCTGGCCGTCTATCACAACCTCTTCAAGGAGGGCGTG
CTTGTGGCCAAGAAGGATTTCTACTCCGTCTGGACGTACAAGTCCCCCGA
CGGCGAAAACGACCTCAACTTGCCCAACCTCGAGGTGATCAACCTGCTCA
AGTCTCTTAAGTCATCGGGCTACGTCAAGGAGACCTTCAACTGGCAATAC
TACTACTACTACCTGACCGTGGAGGGGATTGACTACCTCCGTCAGTACCT
CAATCTCCCCCAAGACGTCGTCCCTCAGACGCACAGTAAGAAAGAGGGCC
GCCCTGCCCGTCCAGCTGGCTTTGCCGAGCGAGGTGACCGCCCTGAAGGG
GAGAGGGAGCGACGGCCGTTTGATAAGGAGAAGAGGCTGGGACCCGATGG
CTCATTTGCGCCGTCTTTCGGTGGGGGTGGATTCGGACGAGGCGGCGGTG
GCAATCGAGAGGGAGGGTACCGTGGTTAGATTCGTTTCCTCTTTGTGAGA
GGACCGGCGAGGAGTGAGGGAGATACTGGGGGAGGGATGGAGAGAAGACG
GCGATGTAGCACAAAACTCAAATCGGCCCGTCTTGGAGGAGGGAAGAAGG
ATGAGGGGCTCGTGTAAACGCACTTCAGTTACTGAGCAGATAGAATGGTA
ACGCGTATGTGCGCTTGCCTCTCTCCTTTCCTATTCCCTTTGTTCAAGCG
GCCGCGTGGTTCCTACGACAAGGAAATGAAGGAACAACATTTA
back to top

protein sequence of NO14G02500.1

>NO14G02500.1-protein ID=NO14G02500.1-protein|Name=NO14G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVI
NLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSK
KEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGGFGR
GGGGNREGGYRG*
back to top

mRNA from alignment at chr14:755621..757415+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02500.1 ID=NO14G02500.1|Name=NO14G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at chr14:755621..757415+ (Nannochloropsis oceanica)
CCCAGTGCATCAGAACGAAAACGTGAACGGTTGGTGGGAGTCTTCCGGTG
GCAATGGTACATGAAGTAAGGGCCTTGAGCAGCGCACTATATTGGATGTA
TGCGATGTAGGAGTGTGTGACAAGGGGATCGAAGGAGTTTTGGTAGTGCT
AACCACCTTAAACGGTGTTAGCCACTCGCCCCTCACTCCCCCTCGCCTTC
TCACCACTCACGCGGCTCCTCTCCAGCTTTTTCTTCCCTCCTTTCCACTC
CCACGCTGTATACCTTGCTTGGGGGCGAAGTAATGGACATTCGTGTCTAT
GGATAATTCCCTCAGGCATATTTATGCAGCATGCTGGGCTGGTGTCGTGG
TAGATTTGTGCGGCTCATGAGATTAACCCCTCCAGACCACCCCCATCCAT
CATTACCCCTTTGACCCACGTCATTCTCCCTCCATTTTATATAGGTCTAG
CTTCCTTTTGGAGGGTTACTAGCCAGTCGGACAGAGCATCATGGTACGTC
ATAGTAGAATTGGGACTATGGGCGGCGGATGGGAAAGGATGAGAGGAGTT
GGAGAAGAGTAGTTGGAGGAGGGGTGCACGAAAGGCAGCCTCACACACAC
ACCAATACACCATACTTGCAGTTCATCACCAAGAAGAACCGCCTGGCCGT
CTATCACAACCTCTTCAAGGGTACGTTTATTGTTTGATGATGAGAAATTT
TGTGAAGAGAGCCTGCATTCTTCCCCCTCTCGTCTCCCTACGGCTTGCCA
ACCCCCCACCGCACACATGATGTCACCCTCGCTGATCCTTCCTCCTGCCA
CCGCTATCACAATAGAGGGCGTGCTTGTGGCCAAGAAGGATTTCTACTCC
GTCTGGACGTACAAGTCCCCCGACGGCGAAAACGACCTCAACTTGCCCAA
CCTCGAGGTGATCAACCTGCTCAAGTCTCTTAAGTCATCGGGCTACGTCA
AGGAGACCTTCAACTGGTGCGCGCCATGGGGGAAATAAGGAAGGGGGAGG
AAAGAGAGGCATAAGGGAAAATCTGTCTGGTGGAGGAGGTTGCTGGGTGA
TTGGAGGGGGAGAGGCCTGGCCTGTGTGGATGCTGATCACATTCATGCTG
GTTGGGCGGCTCCTCCCGTCATCTTTCTCCCTTCCATGCATCGATTTTCT
TCCCTAGGTCTCTCATTATTCCTTCTGCCTTTTTCCTCACGCCGCGCCTC
TTTTTTTTTCCCCTCCAACCCCTTACTTCCTTCCTTATCACTTAGGCAAT
ACTACTACTACTACCTGACCGTGGAGGGGATTGACTACCTCCGTCAGTAC
CTCAATCTCCCCCAAGACGTCGTCCCTCAGACGCACAGTAAGAAAGAGGG
CCGCCCTGCCCGTCCAGCTGGCTTTGCCGAGCGAGGTGACCGCCCTGAAG
GGGAGAGGGAGCGACGGCCGTTTGATAAGGAGAAGAGGCTGGGACCCGAT
GGCTCATTTGCGCCGTCTTTCGGTGGGGGTGGATTCGGACGAGGCGGCGG
TGGCAATCGAGAGGGAGGGTACCGTGGTTAGATTCGTTTCCTCTTTGTGA
GAGGACCGGCGAGGAGTGAGGGAGATACTGGGGGAGGGATGGAGAGAAGA
CGGCGATGTAGCACAAAACTCAAATCGGCCCGTCTTGGAGGAGGGAAGAA
GGATGAGGGGCTCGTGTAAACGCACTTCAGTTACTGAGCAGATAGAATGG
TAACGCGTATGTGCGCTTGCCTCTCTCCTTTCCTATTCCCTTTGTTCAAG
CGGCCGCGTGGTTCCTACGACAAGGAAATGAAGGAACAACATTTA
back to top

Coding sequence (CDS) from alignment at chr14:755621..757415+

>NO14G02500.1 ID=NO14G02500.1|Name=NO14G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at chr14:755621..757415+ (Nannochloropsis oceanica)
ATGTTCATCACCAAGAAGAACCGCCTGGCCGTCTATCACAACCTCTTCAA
GGAGGGCGTGCTTGTGGCCAAGAAGGATTTCTACTCCGTCTGGACGTACA
AGTCCCCCGACGGCGAAAACGACCTCAACTTGCCCAACCTCGAGGTGATC
AACCTGCTCAAGTCTCTTAAGTCATCGGGCTACGTCAAGGAGACCTTCAA
CTGGCAATACTACTACTACTACCTGACCGTGGAGGGGATTGACTACCTCC
GTCAGTACCTCAATCTCCCCCAAGACGTCGTCCCTCAGACGCACAGTAAG
AAAGAGGGCCGCCCTGCCCGTCCAGCTGGCTTTGCCGAGCGAGGTGACCG
CCCTGAAGGGGAGAGGGAGCGACGGCCGTTTGATAAGGAGAAGAGGCTGG
GACCCGATGGCTCATTTGCGCCGTCTTTCGGTGGGGGTGGATTCGGACGA
GGCGGCGGTGGCAATCGAGAGGGAGGGTACCGTGGTTAG
back to top
Synonyms
Publications