NO14G02500, NO14G02500 (gene) Nannochloropsis oceanica

Overview
NameNO14G02500
Unique NameNO14G02500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1795
Alignment locationchr14:755621..757415 +

Link to JBrowse

Properties
Property NameValue
Description40s ribosomal protein s10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:755621..757415 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037447Rps10
IPR005326S10_plectin_N
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: EWM24561.1 (40s ribosomal protein s10 [Nannochloropsis gaditana])

HSP 1 Score: 270.8 bits (691), Expect = 2.800e-69
Identity = 132/147 (89.80%), Postives = 139/147 (94.56%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            MFITKKNRLAVYHNLFKEGVLVAKKD YSVW+YKSP+G+ DL LPNLEV+NL+KSLKSSGYVKETFNWQ+ YYYLT EGI+YLRQYLNLPQDVVPQTHSKKEGRPARPAGF ERGDRPEG  ERRPFDKEKRLGPDGSFAPSFGGGG
Sbjct:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEG--ERRPFDKEKRLGPDGSFAPSFGGGG 243
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: KIO34629.1 (hypothetical protein M407DRAFT_240478 [Tulasnella calospora MUT 4182])

HSP 1 Score: 141.4 bits (355), Expect = 2.600e-30
Identity = 84/157 (53.50%), Postives = 103/157 (65.61%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAG----------FAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M ITKKNR  +Y NLFKEGVLVAKKD      Y SP   +DL++PNLEV+  ++SL S GYVK  F+WQYYYY LT EG++YLR++L+LP ++VP TH KK  RP+RPAG           A RGDR E  R R     EK  G  GS+ P++GG G
Sbjct:    1 MLITKKNRRIIYENLFKEGVLVAKKD------YNSPK-HDDLDVPNLEVVKAMQSLTSKGYVKTQFSWQYYYYTLTNEGLEYLREWLHLPAEIVPATH-KKAARPSRPAGGRPGGGDGTYRAPRGDRDE-YRRRDDGGGEKDTGAPGSYRPTYGGIG 148
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_009844622.1 (hypothetical protein H257_17507 [Aphanomyces astaci] >ETV65869.1 hypothetical protein H257_17507 [Aphanomyces astaci])

HSP 1 Score: 140.6 bits (353), Expect = 4.400e-30
Identity = 75/145 (51.72%), Postives = 93/145 (64.14%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGG 146
            M + KKNR+AVY  LFKEGV+V KKDF++           D+++PNL+VI LL+SL S GYVKETFNWQ+YY+YLT EGI+YLR YL+LP ++VP T  K+  RP RP      G    G        K+K LGP G F P F G
Sbjct:    1 MLVPKKNRIAVYSYLFKEGVMVGKKDFFA-------PKHGDVDVPNLQVIKLLQSLHSRGYVKETFNWQWYYWYLTAEGIEYLRAYLHLPTEIVPATLKKQAARPQRPQAPTGAGGYGRG--------KDKNLGPSGDFNPEFRG 130
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_009529785.1 (hypothetical protein PHYSODRAFT_286426 [Phytophthora sojae] >EGZ16036.1 hypothetical protein PHYSODRAFT_286426 [Phytophthora sojae])

HSP 1 Score: 139.8 bits (351), Expect = 7.400e-30
Identity = 78/147 (53.06%), Postives = 94/147 (63.95%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M + K NR+AVY  LFKEGV+VAKKDF       S      + +PNL+VI L++SLKS GYVKETFNWQY+Y+YLT EGI+YLR YL+LP ++VP T  K+  RP RP           G   R  FDKEK +GP G F P F  GG
Sbjct:    1 MLVPKTNRIAVYSYLFKEGVMVAKKDF-------SLPKHEAVEVPNLQVIKLMQSLKSRGYVKETFNWQYFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQA------PSAGGFGRGRFDKEKGVGPSGDFNPEFRRGG 134
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_008877611.1 (hypothetical protein H310_12365 [Aphanomyces invadans] >ETV93802.1 hypothetical protein H310_12365 [Aphanomyces invadans])

HSP 1 Score: 139.0 bits (349), Expect = 1.300e-29
Identity = 76/149 (51.01%), Postives = 95/149 (63.76%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARP----AGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGG 146
            M + KKNR+AVY  LFKEGV+V KKDF++           D+++PNL+VI L++SL S GYVKETFNWQ+YY+YLT EGI+YLR YL+LP ++VP T  K+  RP RP    AG   RG             K+K LGP G F P F G
Sbjct:    1 MLVPKKNRIAVYSYLFKEGVMVGKKDFFA-------PKHGDVDVPNLQVIKLMQSLHSRGYVKETFNWQWYYWYLTAEGIEYLRAYLHLPTEIVPATLKKQAARPQRPQAPSAGGYGRG-------------KDKNLGPSGDFNPEFRG 129
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: KIJ51523.1 (hypothetical protein M422DRAFT_26932 [Sphaerobolus stellatus SS14])

HSP 1 Score: 139.0 bits (349), Expect = 1.300e-29
Identity = 79/151 (52.32%), Postives = 100/151 (66.23%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGD----RPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M I+K+NR ++Y NLFKEGVLVAKKDF       +P  E DL++PNLEVI  ++SL S G+VK  F+WQYYYY LT EG+DYLR++L+LP ++VP TH KK  RP RPAG    GD     P G+RE      +K+ G  G + P F G G
Sbjct:    1 MIISKQNRRSIYENLFKEGVLVAKKDF------NAPKHE-DLDVPNLEVIKAMQSLTSKGFVKTQFSWQYYYYTLTNEGLDYLREWLHLPAEIVPATH-KKAARPPRPAGIRGGGDGAYRAPRGDREDYRRRDDKKEGAPGEYRPQFAGVG 143
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: GAX97345.1 (40S ribosomal protein S10 [Pythium insidiosum])

HSP 1 Score: 139.0 bits (349), Expect = 1.300e-29
Identity = 79/147 (53.74%), Postives = 96/147 (65.31%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M + KKNR+AVY  LFKEGV+VA+KD      Y  P  E  +++PNL+VI LL SLKS GYVKETFNWQ+YY+YLT EGI+YLR YL+LP ++VP T  K+  RP RP         P     R  FDK+K +GP G F P F  GG
Sbjct:    1 MLVPKKNRIAVYSYLFKEGVMVAQKD------YAKPKHE-AVDVPNLQVIKLLTSLKSRGYVKETFNWQWYYWYLTNEGIEYLRAYLHLPAEIVPATLKKQAARPQRP-------QAPGAGYGRGRFDKDKGVGPAGDFNPEFRRGG 133
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_008904658.1 (hypothetical protein PPTG_10908 [Phytophthora parasitica INRA-310] >ETI47954.1 hypothetical protein F443_07933 [Phytophthora parasitica P1569] >ETK87853.1 hypothetical protein L915_07763 [Phytophthora parasitica] >ETL41272.1 hypothetical protein L916_07693 [Phytophthora parasitica] >ETL94428.1 hypothetical protein L917_07578 [Phytophthora parasitica] >ETM47660.1 hypothetical protein L914_07657 [Phytophthora parasitica] >ETN10221.1 hypothetical protein PPTG_10908 [Phytophthora parasitica INRA-310] >ETO76642.1 hypothetical protein F444_07980 [Phytophthora parasitica P1976] >ETP17724.1 hypothetical protein F441_07906 [Phytophthora parasitica CJ01A1] >ETP45741.1 hypothetical protein F442_07874 [Phytophthora parasitica P10297] >KUG00569.1 40S ribosomal protein S10 [Phytophthora nicotianae])

HSP 1 Score: 138.3 bits (347), Expect = 2.200e-29
Identity = 77/147 (52.38%), Postives = 95/147 (64.63%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M + K NR+AVY  LFKEGV+VAKKDF       S      +++PNL+VI L++SLKS GYVKETFNWQ++Y+YLT EGI+YLR YL+LP ++VP T  K+  RP RP           G   R  FDKEK +GP G F P F  GG
Sbjct:    1 MLVPKTNRIAVYSYLFKEGVMVAKKDF-------SLPKHEAVDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQA------PSAGGFGRGRFDKEKGVGPSGDFNPEFRRGG 134
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: XP_002908887.1 (40S ribosomal protein S10 [Phytophthora infestans T30-4] >AAY43413.1 ribosomal protein S10 [Phytophthora infestans] >EEY57701.1 40S ribosomal protein S10 [Phytophthora infestans T30-4] >POM80305.1 40S ribosomal protein S10 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 138.3 bits (347), Expect = 2.200e-29
Identity = 77/147 (52.38%), Postives = 95/147 (64.63%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            M + K NR+AVY  LFKEGV+VAKKDF       S      +++PNL+VI L++SLKS GYVKETFNWQ++Y+YLT EGI+YLR YL+LP ++VP T  K+  RP RP           G   R  FDKEK +GP G F P F  GG
Sbjct:    1 MLVPKTNRIAVYSYLFKEGVMVAKKDF-------SLPKHEAVDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQA------PSAGGFGRGRFDKEKGVGPSGDFNPEFRRGG 134
[Close]
BLAST of NO14G02500 vs. NCBI_GenBank
Match: CBJ27448.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.5 bits (345), Expect = 3.700e-29
Identity = 78/149 (52.35%), Postives = 97/149 (65.10%), Query Frame = 0 
Query:    1 MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVINLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSKKEGRPARPA--GFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGG 148
            MFI KKNRLAVY  LFKEGVLVAKKDF     +K+   E + ++PNLEV+ L+KS+KS G V+ETFNWQY+Y+YLTVEGI+YLR+YL+LP+++VP T  K   RPARP                        K++GP G F P F  GG
Sbjct:    1 MFILKKNRLAVYSYLFKEGVLVAKKDF-----FKAKHDEIE-DVPNLEVLALMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSASRPARPGPXXXXXXXXXXXXXXXXXXXXXXKKMGPGGDFNPEFQRGG 143
The following BLAST results are available for this feature:
BLAST of NO14G02500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24561.12.800e-6989.8040s ribosomal protein s10 [Nannochloropsis gaditan... [more]
KIO34629.12.600e-3053.50hypothetical protein M407DRAFT_240478 [Tulasnella ... [more]
XP_009844622.14.400e-3051.72hypothetical protein H257_17507 [Aphanomyces astac... [more]
XP_009529785.17.400e-3053.06hypothetical protein PHYSODRAFT_286426 [Phytophtho... [more]
XP_008877611.11.300e-2951.01hypothetical protein H310_12365 [Aphanomyces invad... [more]
KIJ51523.11.300e-2952.32hypothetical protein M422DRAFT_26932 [Sphaerobolus... [more]
GAX97345.11.300e-2953.7440S ribosomal protein S10 [Pythium insidiosum][more]
XP_008904658.12.200e-2952.38hypothetical protein PPTG_10908 [Phytophthora para... [more]
XP_002908887.12.200e-2952.3840S ribosomal protein S10 [Phytophthora infestans ... [more]
CBJ27448.13.700e-2952.35conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002467NSK002467Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02500.1NO14G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590477gene_5832Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100140g4gene5921Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02500.1NO14G02500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02500 ID=NO14G02500|Name=NO14G02500|organism=Nannochloropsis oceanica|type=gene|length=1795bp
CCCAGTGCATCAGAACGAAAACGTGAACGGTTGGTGGGAGTCTTCCGGTG
GCAATGGTACATGAAGTAAGGGCCTTGAGCAGCGCACTATATTGGATGTA
TGCGATGTAGGAGTGTGTGACAAGGGGATCGAAGGAGTTTTGGTAGTGCT
AACCACCTTAAACGGTGTTAGCCACTCGCCCCTCACTCCCCCTCGCCTTC
TCACCACTCACGCGGCTCCTCTCCAGCTTTTTCTTCCCTCCTTTCCACTC
CCACGCTGTATACCTTGCTTGGGGGCGAAGTAATGGACATTCGTGTCTAT
GGATAATTCCCTCAGGCATATTTATGCAGCATGCTGGGCTGGTGTCGTGG
TAGATTTGTGCGGCTCATGAGATTAACCCCTCCAGACCACCCCCATCCAT
CATTACCCCTTTGACCCACGTCATTCTCCCTCCATTTTATATAGGTCTAG
CTTCCTTTTGGAGGGTTACTAGCCAGTCGGACAGAGCATCATGgtacgtc
atagtagaattgggactatgggcggcggatgggaaaggatgagaggagtt
ggagaagagtagttggaggaggggtgcacgaaaggcagcctcacacacac
accaatacaccatacttgcagTTCATCACCAAGAAGAACCGCCTGGCCGT
CTATCACAACCTCTTCAAGGgtacgtttattgtttgatgatgagaaattt
tgtgaagagagcctgcattcttccccctctcgtctccctacggcttgcca
accccccaccgcacacatgatgtcaccctcgctgatccttcctcctgcca
ccgctatcacaatagAGGGCGTGCTTGTGGCCAAGAAGGATTTCTACTCC
GTCTGGACGTACAAGTCCCCCGACGGCGAAAACGACCTCAACTTGCCCAA
CCTCGAGGTGATCAACCTGCTCAAGTCTCTTAAGTCATCGGGCTACGTCA
AGGAGACCTTCAACTGgtgcgcgccatgggggaaataaggaagggggagg
aaagagaggcataagggaaaatctgtctggtggaggaggttgctgggtga
ttggagggggagaggcctggcctgtgtggatgctgatcacattcatgctg
gttgggcggctcctcccgtcatctttctcccttccatgcatcgattttct
tccctaggtctctcattattccttctgcctttttcctcacgccgcgcctc
tttttttttcccctccaaccccttacttccttccttatcacttagGCAAT
ACTACTACTACTACCTGACCGTGGAGGGGATTGACTACCTCCGTCAGTAC
CTCAATCTCCCCCAAGACGTCGTCCCTCAGACGCACAGTAAGAAAGAGGG
CCGCCCTGCCCGTCCAGCTGGCTTTGCCGAGCGAGGTGACCGCCCTGAAG
GGGAGAGGGAGCGACGGCCGTTTGATAAGGAGAAGAGGCTGGGACCCGAT
GGCTCATTTGCGCCGTCTTTCGGTGGGGGTGGATTCGGACGAGGCGGCGG
TGGCAATCGAGAGGGAGGGTACCGTGGTTAGATTCGTTTCCTCTTTGTGA
GAGGACCGGCGAGGAGTGAGGGAGATACTGGGGGAGGGATGGAGAGAAGA
CGGCGATGTAGCACAAAACTCAAATCGGCCCGTCTTGGAGGAGGGAAGAA
GGATGAGGGGCTCGTGTAAACGCACTTCAGTTACTGAGCAGATAGAATGG
TAACGCGTATGTGCGCTTGCCTCTCTCCTTTCCTATTCCCTTTGTTCAAG
CGGCCGCGTGGTTCCTACGACAAGGAAATGAAGGAACAACATTTA
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protein sequence of NO14G02500.1

>NO14G02500.1-protein ID=NO14G02500.1-protein|Name=NO14G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MFITKKNRLAVYHNLFKEGVLVAKKDFYSVWTYKSPDGENDLNLPNLEVI
NLLKSLKSSGYVKETFNWQYYYYYLTVEGIDYLRQYLNLPQDVVPQTHSK
KEGRPARPAGFAERGDRPEGERERRPFDKEKRLGPDGSFAPSFGGGGFGR
GGGGNREGGYRG*
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Synonyms
Publications