NO14G02440, NO14G02440 (gene) Nannochloropsis oceanica

Overview
NameNO14G02440
Unique NameNO14G02440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2386
Alignment locationchr14:727851..730236 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:727851..730236 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO14G02440 vs. NCBI_GenBank
Match: EWM24565.1 (hypothetical protein Naga_100140g9 [Nannochloropsis gaditana])

HSP 1 Score: 285.8 bits (730), Expect = 1.500e-73
Identity = 203/291 (69.76%), Postives = 230/291 (79.04%), Query Frame = 0 
Query:    1 MASPPAAGIKRRRQARQSGPSLLVLATMLTAAATSGLGSAAPLGNGQRGRSSL--PRGPHRPPIDARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTRPWGPVSSSYSYQRYYTSQPTSSSAG-RHEILYPRIMRTVGNTGVCILFMILTARATHLYELADQISGAFRRALIVLPVVGLLCANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLAELLQVAFNSARLVLGNDRFTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ 289
            M +  + G+KR R       S L+LA   TA A+SGLGSA  +  GQ  +  +  P+    P    RG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        VTRPWGP S++YSYQRYY+  P S   G RHEILYPRIMRTVGN+GVCILFMILTAR+THLYELADQISG F+R L+ LPVVGLLCANL GVLLSL+QSFSRNSR KTRLKAIL++NGLAE++Q+A+N+ RL+LGND++TPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ
Sbjct:    1 MKTGVSRGLKRGRHMNPYQKSFLLLAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKA-QLPHFLVRG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMYREQHVVTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ 286
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BLAST of NO14G02440 vs. NCBI_GenBank
Match: CBJ31045.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.8 bits (229), Expect = 1.800e-15
Identity = 56/162 (34.57%), Postives = 92/162 (56.79%), Query Frame = 0 
Query:  128 SYQRYYTSQPTSSSAGRHEILYP--RIMRTVGNTGVCILFMILTARATHLYELADQISGAFRRALIVLPVVGLLCANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLAELLQVAFNSARLVLGNDRFTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQF 288
            +YQ  Y +Q T           P   + R  G  GV  +F+++  R+ + YE A+Q++GA  RA+ ++P VGL   NLV + LSLV+  S  ++ K R+K +LT++ + E L + +N   L+ G     P+E +VGRI T+V  +++C  F+ +RW + G F
Sbjct:   26 AYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGAL-RAMSMVPAVGLFLGNLVCMCLSLVE--SATNKQKARMKTMLTVDAVCEGLLLVYNMLLLLGGASGLVPKEEFVGRILTNVVFMSLCVTFAKARWVADGAF 184
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BLAST of NO14G02440 vs. NCBI_GenBank
Match: XP_002176664.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51127.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 88.6 bits (218), Expect = 3.500e-14
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 0 
Query:  151 RIMRTVGNTGVCILFMILTARATHLYELADQISGAFRRALIVLPVVGLLCANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLAELLQVAFNSARLVLGNDRFTPREAYVGRIFTSVWILTICYAFSTSRWDSS 285
            +++ +VG     ++F +L  R  HLYE+ADQ+     R   V+P+  L  AN+ G + S+    S +   K RLKAIL ++ L E+L + F   RL +   ++TPRE Y+     SV+ +  C AF+   WD +
Sbjct:  146 KLLTSVGKGSRALIFFVLMWRDVHLYEVADQLKSGLTRLFFVIPLAVLFIANMAGAVASIT---SPSQSAKKRLKAILNLDKLLEVLLIVFYFLRLTIAPSKYTPREIYISNTLHSVFFILQCQAFTKMSWDET 276
[Close]
BLAST of NO14G02440 vs. NCBI_GenBank
Match: GAX16118.1 (hypothetical protein FisN_3Hu401 [Fistulifera solaris])

HSP 1 Score: 72.4 bits (176), Expect = 2.600e-9
Identity = 42/134 (31.34%), Postives = 67/134 (50.00%), Query Frame = 0 
Query:  151 RIMRTVGNTGVCILFMILTARATHLYELADQISGAFRRALIVLPVVGLLCANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLAELLQVAFNSARLVLGNDRFTPREAYVGRIFTSVWILTICYAFSTSRWDSS 285
            +++ +VG     ++F +L  R  HLYE+AD       R L V P++ L  +N+VG   SL    S     K RLKAIL ++   E++ + F   RL +      PRE ++  IF SV+ +     ++   WD +
Sbjct:  107 KLLTSVGKGSRALIFFVLMLRDIHLYEVADASRKGLARLLCVTPLIALFLSNMVGAFASLA---SPTHATKKRLKAILNLDKALEVVLMVFYLLRLTIFPPAHIPRETFIANIFHSVFFILQAQTYTRLSWDET 237
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BLAST of NO14G02440 vs. NCBI_GenBank
Match: OEU18762.1 (hypothetical protein FRACYDRAFT_268438 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 72.0 bits (175), Expect = 3.400e-9
Identity = 45/154 (29.22%), Postives = 79/154 (51.30%), Query Frame = 0 
Query:  130 QRYYTSQPTSSSAGRHEILYPRIMRTVGNTGVCILFMILTARATHLYELADQ-ISGAFRRALIVLPVVGLLCANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLAELLQVAFNSARLVLGNDRFTPREAYVGRIFTSVWILTICYAFSTSRWD 283
            ++Y    P      R E    ++M +V      ++F IL  R  +L+++ADQ I G+FR+ L+   +  +   NL GV++S+      ++  K RLKAIL ++ + E   + +N  R+ L   ++ PRE ++  I  S+  +  C AF+   WD
Sbjct:    2 EKYGNLTPQQEYNPRDEDGRMKLMSSVSKGSRALIFFILMWRDVYLFDVADQFIKGSFRKGLVRCILTSVFIGNLAGVVISVTSPAGHST--KNRLKAILNLDKVVETGLLLWNFGRVTLFPSKYVPREIFIAGIMHSIIFIIQCQAFTRVTWD 153
The following BLAST results are available for this feature:
BLAST of NO14G02440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24565.11.500e-7369.76hypothetical protein Naga_100140g9 [Nannochloropsi... [more]
CBJ31045.11.800e-1534.57conserved unknown protein [Ectocarpus siliculosus][more]
XP_002176664.13.500e-1434.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX16118.12.600e-931.34hypothetical protein FisN_3Hu401 [Fistulifera sola... [more]
OEU18762.13.400e-929.22hypothetical protein FRACYDRAFT_268438 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002460NSK002460Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02440.1NO14G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590434gene_5826Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100140g9gene5917Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02440.1NO14G02440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02440 ID=NO14G02440|Name=NO14G02440|organism=Nannochloropsis oceanica|type=gene|length=2386bp
AGTCTATATTTTATATTTGTGTGAGTGGAGTTAATTCAAGCACCATTTTT
CATTCGCTCTTTGGTGTGCTGTGGGGTTATGCTCGCAATCAATCTGTTGC
GCGCTTTCCCAGCCTTCATCCAGCCATCCATACTCGTGGGCAAGCGCTTG
CTGTTCTGTTTCCTTCCTGGTCTGATCCGTGCACATCCTGAGCAAAACCG
TATCATCGGCGGTACATAGGCGGGACGCCCCAATGAGGACTCCCCATCTC
AGGTGGTCTGGTGGAAGAGCATGTTTGCCCTGGCTTCGCTTGTTTGTTTG
GCCCGTCCTCTCCTTCCGGCAGCTTAACTGCGATGCAAGCAACACATGTT
GAAACCAATTAAAGCACGTTTGGTGCTGTAGCAGTCTGCCTACATCCCCG
ACATGAAGCCGAGACGTGCCTTGCAGGCGTAAACGGGTTTTCTAGCCAGG
GAGCAGCACGCTTAATAACAAGCACTATGTCAGGCCTGTCGATATAATTT
AGGCTGCTTGGAAACGTTAGAAAATTACGAGACCAGCTTTATCAGCAAGG
GGACCCAAAACACTAGTGTATAGATCCCCTTGCTATATCAGCGAGTCATG
GCATGACCCCTCCTCCTTGTGATGATGGCGCTTTCTCTGCATCGACTTAC
ATGTCTACGGACACATAGACACCCACGCAACCCCATCTATCAGCATATCC
ACCAGCCACTTCACCGCGACTAGCCATTCACCCCATTCTAGAGCACAGTC
AGCCTATCCCCTCCGCAAAGTGAACCATCATCAACTACAACCAGCAGCAA
GGATGGCATCCCCTCCCGCGGCTGGCATCAAGCGACGCCGTCAAGCACGT
CAATCGGGCCCTTCCCTTCTCGTCCTTGCTACGATGCTGACAGCAGCAGC
TACCTCTGGCCTAGGCAGTGCCGCCCCCCTGGGCAATGGCCAACGCGGCA
GAAGCAGCCTTCCGAGAGGGCCTCATCGGgtaggaaaggagtggatgaat
ggaggtttgatatcgagatgcgtaatgtgtgtgacttaagagttatatag
cccagagatactccttacaatggcacatttcccaggagaacggaagatag
agaggtggaggtagtgttagagcgactgccttcttccatctcgcgtttcc
tccctctcttacccgttctcccttgtggtgcccattaacttacacgtaca
catacattctcgatgtctctaaatgtatctttccatcactcatccctcct
tcgcacctctaccactcacacgaatgaccaaaagcagCCACCCATCGACG
CCCGCGGCGGCAGCAGCTTTGTACCTCCTCCTCCCCAACAATCTGGCACC
CGGCATCCACGCAACAACGTCAACGACGACCCTCCGCAAGAGCCACAACA
GCGACAACAACAACAAGGAGGGAATTACGCCGCAGCTGCTGCTGCCGGGG
GTCCCGTGACCCGTCCGTGGGGCCCTGTCTCATCTTCCTACAGCTATCAA
CGGTACTACACCTCGCAACCAACGTCCTCCTCGGCGGGGCGTCACGAGAT
CCTCTACCCACGCATCATGCGTACAGTCGGCAACACGGGTGTGTGTATTT
TGTTCATGATCCTCACTGCACGTGCCACGCACCTTTACGAGCTCGCGGAC
CAGATTTCTGGTGCCTTCCGCCGAGCCCTCATCGTCTTACCTGTCGTCGG
TCTCTTATGTGCGAACTTGGTAGGCGTGCTCCTCTCTCTCGTGCAGTCTT
TCTCACGAAATTCGCGGATCAAGACGCGGCTAAAGGCAATTTTAACCATT
AACGGACTGGCAGAATTGTTGCAAGTGGCCTTCAACTCAGCCAGGTTGGT
GTTAGGGAACGACAGATTCACCCCGCGAGAGGCGTATGTGGGAAGGATTT
TTACGAGCGTTTGGATATTGACGATTTGTTATGCTTTTAGTACCAGTAGG
TGGGACAGCTCGGGACAATTTCAGTAAGGGGAGGAAGGGGGGAGGGAAAC
GGGAGAGGGAGAGGTACATGAGGGTTTCTGGTGGTTTTGTGTTTTGTGTA
TGTATGTGATTGGAGCATGAGGATGCGTCGCATGAAGGTTGTTGACGTGT
CGAAGAAGCTTAACCTCGAGGACAAGATAACGTCAGATAAAACCTCCTTG
TCTTTCACGACTTAAGAGTGGTGCGTGGGAGGGGAAGGAGTAGGTCGTCG
TTCGCTTCTCTTGAAAAACTTTCAATCTTCCACTCTGCGCTATTCGACCT
TTTTTGGTAGTGATTTTTTGTACAGCCCTAATTATGACTCAATAGCAAGA
CGAAACAATTAGCAAGACGAAACAAACGACGTCAGGATTGGTGGGAAACA
AAAAGAAGTAAAAAGGACGAGTATTTGCTGAGGGGG
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protein sequence of NO14G02440.1

>NO14G02440.1-protein ID=NO14G02440.1-protein|Name=NO14G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MASPPAAGIKRRRQARQSGPSLLVLATMLTAAATSGLGSAAPLGNGQRGR
SSLPRGPHRPPIDARGGSSFVPPPPQQSGTRHPRNNVNDDPPQEPQQRQQ
QQGGNYAAAAAAGGPVTRPWGPVSSSYSYQRYYTSQPTSSSAGRHEILYP
RIMRTVGNTGVCILFMILTARATHLYELADQISGAFRRALIVLPVVGLLC
ANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLAELLQVAFNSARLVLGN
DRFTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ*
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Synonyms
Publications