NO14G02440.1, NO14G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02440.1
Unique NameNO14G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2078
Alignment locationchr14:727851..730236 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:727851..730236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02440.1 vs.
Match: EWM24565.1 (hypothetical protein Naga_100140g9 [Nannochloropsis gaditana])

HSP 1 Score: 327.0 bits (837), Expect = 5.800e-86
Identity = 188/292 (64.38%), Postives = 219/292 (75.00%), Query Frame = 0 
Query:    1 MASPPAAGIKRRRQARQSGPSLLVLATMLTAAATSGLGSAAPLGNGQRGRSSL--PRGPHRPPIDARGGSSFVPPPP-QQSGTRHPRNNVNDDPPQEPQQRQQQQGGNYAAAAAAGGPVTRPWGPVSSSYSYQRYYTSQPTSSSAG-RHEILYPRIMRTVGNTGVCILFMILTARATHLYELADQISGAFRRALIVLPVVGLLCANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLAELLQVAFNSARLVLGNDRFTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ 289
            M +  + G+KR R       S L+LA   TA A+SGLGSA  +  GQ  +  +  P+    P    RGGSSFVPPPP QQS  R P +   DD  Q+PQ+R  Q+   Y         VTRPWGP S++YSYQRYY+  P S   G RHEILYPRIMRTVGN+GVCILFMILTAR+THLYELADQISG F+R L+ LPVVGLLCANL GVLLSL+QSFSRNSR KTRLKAIL++NGLAE++Q+A+N+ RL+LGND++TPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ
Sbjct:    1 MKTGVSRGLKRGRHMNPYQKSFLLLAAAFTAGASSGLGSADYVEKGQSSKLHVVSPKA-QLPHFLVRGGSSFVPPPPSQQSSPRAPPSQRKDDQ-QQPQERPPQETAMYREQHV----VTRPWGPSSTAYSYQRYYSVNPPSPEGGARHEILYPRIMRTVGNSGVCILFMILTARSTHLYELADQISGIFKRLLVTLPVVGLLCANLAGVLLSLMQSFSRNSRSKTRLKAILSLNGLAEVIQIAYNAFRLILGNDQWTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ 286
The following BLAST results are available for this feature:
BLAST of NO14G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24565.15.800e-8664.38hypothetical protein Naga_100140g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02440NO14G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02440.1NO14G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02440.1.cds1NO14G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02440.1.cds2NO14G02440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02440.1 ID=NO14G02440.1|Name=NO14G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2078bp
AGTCTATATTTTATATTTGTGTGAGTGGAGTTAATTCAAGCACCATTTTT
CATTCGCTCTTTGGTGTGCTGTGGGGTTATGCTCGCAATCAATCTGTTGC
GCGCTTTCCCAGCCTTCATCCAGCCATCCATACTCGTGGGCAAGCGCTTG
CTGTTCTGTTTCCTTCCTGGTCTGATCCGTGCACATCCTGAGCAAAACCG
TATCATCGGCGGTACATAGGCGGGACGCCCCAATGAGGACTCCCCATCTC
AGGTGGTCTGGTGGAAGAGCATGTTTGCCCTGGCTTCGCTTGTTTGTTTG
GCCCGTCCTCTCCTTCCGGCAGCTTAACTGCGATGCAAGCAACACATGTT
GAAACCAATTAAAGCACGTTTGGTGCTGTAGCAGTCTGCCTACATCCCCG
ACATGAAGCCGAGACGTGCCTTGCAGGCGTAAACGGGTTTTCTAGCCAGG
GAGCAGCACGCTTAATAACAAGCACTATGTCAGGCCTGTCGATATAATTT
AGGCTGCTTGGAAACGTTAGAAAATTACGAGACCAGCTTTATCAGCAAGG
GGACCCAAAACACTAGTGTATAGATCCCCTTGCTATATCAGCGAGTCATG
GCATGACCCCTCCTCCTTGTGATGATGGCGCTTTCTCTGCATCGACTTAC
ATGTCTACGGACACATAGACACCCACGCAACCCCATCTATCAGCATATCC
ACCAGCCACTTCACCGCGACTAGCCATTCACCCCATTCTAGAGCACAGTC
AGCCTATCCCCTCCGCAAAGTGAACCATCATCAACTACAACCAGCAGCAA
GGATGGCATCCCCTCCCGCGGCTGGCATCAAGCGACGCCGTCAAGCACGT
CAATCGGGCCCTTCCCTTCTCGTCCTTGCTACGATGCTGACAGCAGCAGC
TACCTCTGGCCTAGGCAGTGCCGCCCCCCTGGGCAATGGCCAACGCGGCA
GAAGCAGCCTTCCGAGAGGGCCTCATCGGCCACCCATCGACGCCCGCGGC
GGCAGCAGCTTTGTACCTCCTCCTCCCCAACAATCTGGCACCCGGCATCC
ACGCAACAACGTCAACGACGACCCTCCGCAAGAGCCACAACAGCGACAAC
AACAACAAGGAGGGAATTACGCCGCAGCTGCTGCTGCCGGGGGTCCCGTG
ACCCGTCCGTGGGGCCCTGTCTCATCTTCCTACAGCTATCAACGGTACTA
CACCTCGCAACCAACGTCCTCCTCGGCGGGGCGTCACGAGATCCTCTACC
CACGCATCATGCGTACAGTCGGCAACACGGGTGTGTGTATTTTGTTCATG
ATCCTCACTGCACGTGCCACGCACCTTTACGAGCTCGCGGACCAGATTTC
TGGTGCCTTCCGCCGAGCCCTCATCGTCTTACCTGTCGTCGGTCTCTTAT
GTGCGAACTTGGTAGGCGTGCTCCTCTCTCTCGTGCAGTCTTTCTCACGA
AATTCGCGGATCAAGACGCGGCTAAAGGCAATTTTAACCATTAACGGACT
GGCAGAATTGTTGCAAGTGGCCTTCAACTCAGCCAGGTTGGTGTTAGGGA
ACGACAGATTCACCCCGCGAGAGGCGTATGTGGGAAGGATTTTTACGAGC
GTTTGGATATTGACGATTTGTTATGCTTTTAGTACCAGTAGGTGGGACAG
CTCGGGACAATTTCAGTAAGGGGAGGAAGGGGGGAGGGAAACGGGAGAGG
GAGAGGTACATGAGGGTTTCTGGTGGTTTTGTGTTTTGTGTATGTATGTG
ATTGGAGCATGAGGATGCGTCGCATGAAGGTTGTTGACGTGTCGAAGAAG
CTTAACCTCGAGGACAAGATAACGTCAGATAAAACCTCCTTGTCTTTCAC
GACTTAAGAGTGGTGCGTGGGAGGGGAAGGAGTAGGTCGTCGTTCGCTTC
TCTTGAAAAACTTTCAATCTTCCACTCTGCGCTATTCGACCTTTTTTGGT
AGTGATTTTTTGTACAGCCCTAATTATGACTCAATAGCAAGACGAAACAA
TTAGCAAGACGAAACAAACGACGTCAGGATTGGTGGGAAACAAAAAGAAG
TAAAAAGGACGAGTATTTGCTGAGGGGG
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protein sequence of NO14G02440.1

>NO14G02440.1-protein ID=NO14G02440.1-protein|Name=NO14G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MASPPAAGIKRRRQARQSGPSLLVLATMLTAAATSGLGSAAPLGNGQRGR
SSLPRGPHRPPIDARGGSSFVPPPPQQSGTRHPRNNVNDDPPQEPQQRQQ
QQGGNYAAAAAAGGPVTRPWGPVSSSYSYQRYYTSQPTSSSAGRHEILYP
RIMRTVGNTGVCILFMILTARATHLYELADQISGAFRRALIVLPVVGLLC
ANLVGVLLSLVQSFSRNSRIKTRLKAILTINGLAELLQVAFNSARLVLGN
DRFTPREAYVGRIFTSVWILTICYAFSTSRWDSSGQFQ*
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mRNA from alignment at chr14:727851..730236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02440.1 ID=NO14G02440.1|Name=NO14G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2386bp|location=Sequence derived from alignment at chr14:727851..730236- (Nannochloropsis oceanica)
AGTCTATATTTTATATTTGTGTGAGTGGAGTTAATTCAAGCACCATTTTT
CATTCGCTCTTTGGTGTGCTGTGGGGTTATGCTCGCAATCAATCTGTTGC
GCGCTTTCCCAGCCTTCATCCAGCCATCCATACTCGTGGGCAAGCGCTTG
CTGTTCTGTTTCCTTCCTGGTCTGATCCGTGCACATCCTGAGCAAAACCG
TATCATCGGCGGTACATAGGCGGGACGCCCCAATGAGGACTCCCCATCTC
AGGTGGTCTGGTGGAAGAGCATGTTTGCCCTGGCTTCGCTTGTTTGTTTG
GCCCGTCCTCTCCTTCCGGCAGCTTAACTGCGATGCAAGCAACACATGTT
GAAACCAATTAAAGCACGTTTGGTGCTGTAGCAGTCTGCCTACATCCCCG
ACATGAAGCCGAGACGTGCCTTGCAGGCGTAAACGGGTTTTCTAGCCAGG
GAGCAGCACGCTTAATAACAAGCACTATGTCAGGCCTGTCGATATAATTT
AGGCTGCTTGGAAACGTTAGAAAATTACGAGACCAGCTTTATCAGCAAGG
GGACCCAAAACACTAGTGTATAGATCCCCTTGCTATATCAGCGAGTCATG
GCATGACCCCTCCTCCTTGTGATGATGGCGCTTTCTCTGCATCGACTTAC
ATGTCTACGGACACATAGACACCCACGCAACCCCATCTATCAGCATATCC
ACCAGCCACTTCACCGCGACTAGCCATTCACCCCATTCTAGAGCACAGTC
AGCCTATCCCCTCCGCAAAGTGAACCATCATCAACTACAACCAGCAGCAA
GGATGGCATCCCCTCCCGCGGCTGGCATCAAGCGACGCCGTCAAGCACGT
CAATCGGGCCCTTCCCTTCTCGTCCTTGCTACGATGCTGACAGCAGCAGC
TACCTCTGGCCTAGGCAGTGCCGCCCCCCTGGGCAATGGCCAACGCGGCA
GAAGCAGCCTTCCGAGAGGGCCTCATCGGGTAGGAAAGGAGTGGATGAAT
GGAGGTTTGATATCGAGATGCGTAATGTGTGTGACTTAAGAGTTATATAG
CCCAGAGATACTCCTTACAATGGCACATTTCCCAGGAGAACGGAAGATAG
AGAGGTGGAGGTAGTGTTAGAGCGACTGCCTTCTTCCATCTCGCGTTTCC
TCCCTCTCTTACCCGTTCTCCCTTGTGGTGCCCATTAACTTACACGTACA
CATACATTCTCGATGTCTCTAAATGTATCTTTCCATCACTCATCCCTCCT
TCGCACCTCTACCACTCACACGAATGACCAAAAGCAGCCACCCATCGACG
CCCGCGGCGGCAGCAGCTTTGTACCTCCTCCTCCCCAACAATCTGGCACC
CGGCATCCACGCAACAACGTCAACGACGACCCTCCGCAAGAGCCACAACA
GCGACAACAACAACAAGGAGGGAATTACGCCGCAGCTGCTGCTGCCGGGG
GTCCCGTGACCCGTCCGTGGGGCCCTGTCTCATCTTCCTACAGCTATCAA
CGGTACTACACCTCGCAACCAACGTCCTCCTCGGCGGGGCGTCACGAGAT
CCTCTACCCACGCATCATGCGTACAGTCGGCAACACGGGTGTGTGTATTT
TGTTCATGATCCTCACTGCACGTGCCACGCACCTTTACGAGCTCGCGGAC
CAGATTTCTGGTGCCTTCCGCCGAGCCCTCATCGTCTTACCTGTCGTCGG
TCTCTTATGTGCGAACTTGGTAGGCGTGCTCCTCTCTCTCGTGCAGTCTT
TCTCACGAAATTCGCGGATCAAGACGCGGCTAAAGGCAATTTTAACCATT
AACGGACTGGCAGAATTGTTGCAAGTGGCCTTCAACTCAGCCAGGTTGGT
GTTAGGGAACGACAGATTCACCCCGCGAGAGGCGTATGTGGGAAGGATTT
TTACGAGCGTTTGGATATTGACGATTTGTTATGCTTTTAGTACCAGTAGG
TGGGACAGCTCGGGACAATTTCAGTAAGGGGAGGAAGGGGGGAGGGAAAC
GGGAGAGGGAGAGGTACATGAGGGTTTCTGGTGGTTTTGTGTTTTGTGTA
TGTATGTGATTGGAGCATGAGGATGCGTCGCATGAAGGTTGTTGACGTGT
CGAAGAAGCTTAACCTCGAGGACAAGATAACGTCAGATAAAACCTCCTTG
TCTTTCACGACTTAAGAGTGGTGCGTGGGAGGGGAAGGAGTAGGTCGTCG
TTCGCTTCTCTTGAAAAACTTTCAATCTTCCACTCTGCGCTATTCGACCT
TTTTTGGTAGTGATTTTTTGTACAGCCCTAATTATGACTCAATAGCAAGA
CGAAACAATTAGCAAGACGAAACAAACGACGTCAGGATTGGTGGGAAACA
AAAAGAAGTAAAAAGGACGAGTATTTGCTGAGGGGG
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Coding sequence (CDS) from alignment at chr14:727851..730236-

>NO14G02440.1 ID=NO14G02440.1|Name=NO14G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr14:727851..730236- (Nannochloropsis oceanica)
ATGGCATCCCCTCCCGCGGCTGGCATCAAGCGACGCCGTCAAGCACGTCA
ATCGGGCCCTTCCCTTCTCGTCCTTGCTACGATGCTGACAGCAGCAGCTA
CCTCTGGCCTAGGCAGTGCCGCCCCCCTGGGCAATGGCCAACGCGGCAGA
AGCAGCCTTCCGAGAGGGCCTCATCGGCCACCCATCGACGCCCGCGGCGG
CAGCAGCTTTGTACCTCCTCCTCCCCAACAATCTGGCACCCGGCATCCAC
GCAACAACGTCAACGACGACCCTCCGCAAGAGCCACAACAGCGACAACAA
CAACAAGGAGGGAATTACGCCGCAGCTGCTGCTGCCGGGGGTCCCGTGAC
CCGTCCGTGGGGCCCTGTCTCATCTTCCTACAGCTATCAACGGTACTACA
CCTCGCAACCAACGTCCTCCTCGGCGGGGCGTCACGAGATCCTCTACCCA
CGCATCATGCGTACAGTCGGCAACACGGGTGTGTGTATTTTGTTCATGAT
CCTCACTGCACGTGCCACGCACCTTTACGAGCTCGCGGACCAGATTTCTG
GTGCCTTCCGCCGAGCCCTCATCGTCTTACCTGTCGTCGGTCTCTTATGT
GCGAACTTGGTAGGCGTGCTCCTCTCTCTCGTGCAGTCTTTCTCACGAAA
TTCGCGGATCAAGACGCGGCTAAAGGCAATTTTAACCATTAACGGACTGG
CAGAATTGTTGCAAGTGGCCTTCAACTCAGCCAGGTTGGTGTTAGGGAAC
GACAGATTCACCCCGCGAGAGGCGTATGTGGGAAGGATTTTTACGAGCGT
TTGGATATTGACGATTTGTTATGCTTTTAGTACCAGTAGGTGGGACAGCT
CGGGACAATTTCAGTAA
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Synonyms
Publications