NO14G02370, NO14G02370 (gene) Nannochloropsis oceanica

Overview
NameNO14G02370
Unique NameNO14G02370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2219
Alignment locationchr14:704501..706719 +

Link to JBrowse

Properties
Property NameValue
DescriptionThreonyl-tRNA synthetase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:704501..706719 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016874ligase activity
GO:0005524ATP binding
GO:0004829threonine-tRNA ligase activity
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR018392LysM_dom
Vocabulary: Biological Process
TermDefinition
GO:0043039tRNA aminoacylation
GO:0006435threonyl-tRNA aminoacylation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
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BLAST of NO14G02370 vs. NCBI_GenBank
Match: XP_005855179.1 (threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526] >EKU21182.1 threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 193.7 bits (491), Expect = 1.400e-45
Identity = 136/335 (40.60%), Postives = 178/335 (53.13%), Query Frame = 0 
Query:    1 MDHDHDDPLFQLHKLQLSTPLLDEPILIKCIKFPLVYLVSLSRASLLKALSPRQDIETKQLQIAPSPVYPDILEVRHVHA---FEAFDGEAYPNECHHHPQHRSAALHSGLAHIQEQDRLTHVNGQPVFSIKQVQHLLI-----------QSGDEEEIVAVRLLRKENPHAEYVNMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLNQSRYMPLQPYESWGDKTNPDHAFYEPLWCFPIFIYLIQAGDTLPSLARSFGLKIDVLRRDNRDKFKVGEPAGVLISGQKLRVRN 322
            MD+  DD   Q  K +L+ PLL+E   IKC+KFPLVY V L RA L++A+SP     TK+L   P P + D+LEV  V +     A  G+   N C             GL ++Q  DRLTHVNG+ V S+K VQ +L+           ++ D+   V ++LLRK+NP+A Y+++D      XXXXXXXXXX                                                           S    LQPYESWGD+ + +   Y PLWCFP+F YL+QAGD+LPS+AR+FG+ +DVLRRDNRDKF++GE AGVL +GQKLRVRN
Sbjct:    3 MDYYGDDSFKQ--KQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSP-GPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAP-------PGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSXXXXXXXXXXCHSFHEDSGQTSSLLALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRP------CRVSSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFRLGEAAGVLSAGQKLRVRN 321
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BLAST of NO14G02370 vs. NCBI_GenBank
Match: EWM24569.1 (hypothetical protein Naga_100462g4 [Nannochloropsis gaditana])

HSP 1 Score: 166.0 bits (419), Expect = 3.200e-37
Identity = 122/317 (38.49%), Postives = 162/317 (51.10%), Query Frame = 0 
Query:    1 MDHDHDDPLFQLHKLQLSTPLLDEPILIKCIKFPLVYLVSLSRASLLKALSPRQDIETKQLQIAPSPVYPDILEVRHVHA---FEAFDGEAYPNECHHHPQHRSAALHSGLAHIQEQDRLTHVNGQPVFSIKQVQHLLI-----------QSGDEEEIVAVRLLRKENPHAEYVNMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLNQSRYMPLQPYESWGDKTNPDHAFYEPLWCFPIFIYLIQAGDTLPSLARSFGLKIDVLRRDNRDKFK 304
            MD+  DD   Q  K +L+ PLL+E   IKC+KFPLVY V L RA L++A+SP     TK+L   P P + D+LEV  V +     A  G+   N C             GL ++Q  DRLTHVNG+ V S+K VQ +L+           ++ D+   V ++LLRK+NP+A Y+++D      XXXXXXXXXX                                                           S    LQPYESWGD+ + +   Y PLWCFP+F YL+QAGD+LPS+AR+FG+ +DVLRRDNRDKF+
Sbjct:    3 MDYYGDDSFKQ--KQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSP-GPWRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAP-------PGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSXXXXXXXXXXCHSFHEDSGQTSSLLALVLSGGGCISFSPSSPSFASLVTSGAGPGSSRRP------CRVSSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFR 303
The following BLAST results are available for this feature:
BLAST of NO14G02370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855179.11.400e-4540.60threonyl-tRNA synthetase, partial [Nannochloropsis... [more]
EWM24569.13.200e-3738.49hypothetical protein Naga_100462g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002452NSK002452Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02370.1NO14G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100462g4gene5909Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02370.1NO14G02370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02370 ID=NO14G02370|Name=NO14G02370|organism=Nannochloropsis oceanica|type=gene|length=2219bp
AAGCAAACCTGCAGGCTTTCATGGACCATGACCACGACGACCCGCTATTT
CAGCTGCACAAGCTTCAGCTCTCGACGCCCTTGCTCGATGAGCCTATTTT
GATAAAGTGCATCAAATTTCCACTTGTCTACTTGGTGAGTTTGTCCCGGG
CGTCTTTACTCAAAGCCCTGTCTCCTCGTCAGGACATTGAGACCAAACAA
TTGCAGATAGCGCCTTCGCCTGTCTACCCCGACATCCTGGAAGTACGGCA
CGTTCATGCTTTCGAGGCCTTCGATGGGGAGGCATACCCGAACGAGTGTC
ACCACCATCCGCAGCATCGCTCTGCAGCGTTACACTCAGGCCTGGCCCAC
ATACAGGAACAAGACCGCCTAACGCACGTGAATGGACAGCCCGTATTTTC
GATCAAGCAGGTTCAGCACTTGCTTATTCAAAGCGGGGACGAGGAGGAGA
TAGTGGCCGTACGGCTACTGCGCAAGGAGAATCCTCATGCCGAGTACGTA
AACATGGATGATCCCTCCACCTCTTCGTCCTCTTCCTCCATCTCCTCCGG
TGAGTCTTCTTCCTACTATTCTTCTTCGCCAGACGAAAATGACCAGTACA
CTTCAATTTTGTCCATGCTCATGACTGGGGGAGGCTGTATCTCCTTCTCC
CCCTCCTCGCCCTCCCTCTCTTCCTCCCTGGTAAGCACCGGCGCCAGCGC
CAGCACCAGCTCCAGCAGCAAGCGCCTTAATCAGTCACGATACATGCCGT
TACAGCCCTATGAATCATGGGGAGACAAAACAAATCCAGATCACGCATTC
TACGAGCCGTTGTGGTGCTTCCCTATCTTCATCTACCTCATCCAGGCAGG
GGATACGTTGCCCTCGCTAGCTCGGTCCTTCGGTCTCAAAATCGATGTCT
TGCGAAGGGACAACAGAGATAAATTCAAGGTAGGCGAGCCAGCAGGTGTG
TTGATATCAGGACAGAAGCTCAGGGTCAGAAATGTAGAATATGATGGGAA
GGCGACGGCGGCCTGGGTGGCACGAGGCGGTGGATTGGGGGGACGAGGTA
GGGAGGGAGGAAGGGCTGGAGGAGGGGTGGTGATGAAGATGTCGAGTTCG
GAGGAGGACGACGAGGATGAGGGGTTCGGGTACTGTTGGAGGGAGGGATG
GAAGCATCAGCATCGGCAGCAAGAGCAGCATCCGCAAAGGCAGCAGCAGG
AGCAGCAGCAGAGGAGGAGGCAGCATGTGGTGGTGAGGGGAGAGACGATG
AAGGGGTTGTGTGCCCGTTACGGAGTGAGCGAACTCGATATCCGAAGGGC
CAATCGCAATTACTTCCCTGTAGGGGAACAAAGCTTTCTAGAGGAGGGAA
TGCGCTTAATTATCTTTCCTAGTGCTGCTCCTGCTGCTGTTTCCGCTGTC
ACTGCTGCTACTTCGTACATATCTCCCTCGGCCGTTGGGGTGCTGTGGAA
GGGAAAAGGCGGGGCGTCGTCGCCGCTATCGTCCTCTCCGCGGACCAGCA
GCAGTGGGAGTTACAGTAGCAGTGATAGTAGTAGTAGTCGTGGGAGTGGG
GGAGGGAAGGAGGGAGGGATGGAGGGAGGGGGGAGTGGCCGACCCGTCCT
GTTTCCAGTAGTGGATCTTGGGGGAGTTGTATAGGGGGGAGGAGATAGCG
AGCAAGAAACACCGAGAGCGCAAGATTCAGAGAGCGGAGAAGAAGAGGAG
GAGGAAAAAGATGAAGAGGAAGAGGATGAGGGATGAGTGTATGTAAGGGT
GAAGAAAAAAACATATGTTGATACAAATTAAGTGTACAAGAGGAAGGGAG
GACGAAGAGTAAAAATAATCCTGTTTCGAGAGAGTGGTGGGTGCGTGAGA
TGCGTGAGAAAGAGGCCTGTATTGTACTCATTAAACGGGGACGAAAAGTG
GGAGGGGGGGAAGGAGCGTTCTGCATGTGTGCGTGTGTACGAGATATCGA
CACACATTTTAAATGATCACAACTACTTAACACAACCAATTATGCATGAT
TGAGGCGGGGAGCGTGTGACAAGTGACGGGAAGGAGATGGAAGCATATAG
AGAGAGGGAAGATGAGGAGGGAGAGGGAGAAAGGGGGGAGGGAAAACAAG
AGCAAAGAAAGACGAAGGATGTGTGTATGTCTGCGGACCCGTCTCCGACA
GAGAAAAAGAGGAGAGAGAGGAGAAAGGTTGAGGTACGAGAAATGAATAA
TTACCGACAGCCAAACGCA
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protein sequence of NO14G02370.1

>NO14G02370.1-protein ID=NO14G02370.1-protein|Name=NO14G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp
MDHDHDDPLFQLHKLQLSTPLLDEPILIKCIKFPLVYLVSLSRASLLKAL
SPRQDIETKQLQIAPSPVYPDILEVRHVHAFEAFDGEAYPNECHHHPQHR
SAALHSGLAHIQEQDRLTHVNGQPVFSIKQVQHLLIQSGDEEEIVAVRLL
RKENPHAEYVNMDDPSTSSSSSSISSGESSSYYSSSPDENDQYTSILSML
MTGGGCISFSPSSPSLSSSLVSTGASASTSSSSKRLNQSRYMPLQPYESW
GDKTNPDHAFYEPLWCFPIFIYLIQAGDTLPSLARSFGLKIDVLRRDNRD
KFKVGEPAGVLISGQKLRVRNVEYDGKATAAWVARGGGLGGRGREGGRAG
GGVVMKMSSSEEDDEDEGFGYCWREGWKHQHRQQEQHPQRQQQEQQQRRR
QHVVVRGETMKGLCARYGVSELDIRRANRNYFPVGEQSFLEEGMRLIIFP
SAAPAAVSAVTAATSYISPSAVGVLWKGKGGASSPLSSSPRTSSSGSYSS
SDSSSSRGSGGGKEGGMEGGGSGRPVLFPVVDLGGVV*
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Synonyms
Publications