NO14G02370.1, NO14G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02370.1
Unique NameNO14G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2219
Alignment locationchr14:704501..706719 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:704501..706719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02370.1 vs.
Match: XP_005855179.1 (threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526]; EKU21182.1 threonyl-tRNA synthetase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 253.8 bits (647), Expect = 1.200e-63
Identity = 167/373 (44.77%), Postives = 232/373 (62.20%), Query Frame = 0 
Query:    1 MDHDHDDPLFQLHKLQLSTPLLDEPILIKCIKFPLVYLVSLSRASLLKALSPRQDIETKQLQIAPSPVYPDILEVRHVHA---FEAFDGEAYPNECHHHPQHRSAALHSGLAHIQEQDRLTHVNGQPVFSIKQVQHLLIQ-----------SGDEEEIVAVRLLRKENPHAEYVNMDDPSTSSSSSSISSGESSSYYSSSPDENDQYTSILSMLMTGGGCISFSPSSPSLSSSLVSTGASASTSSSSKRLNQSRYMPLQPYESWGDKTNPDHAFYEPLWCFPIFIYLIQAGDTLPSLARSFGLKIDVLRRDNRDKFKVGEPAGVLISGQKLRVRNVEYDGKATAAWVARGGGLGGRGREGGRAGGGVVMKMSS 360
            MD+  DD   Q  K +L+ PLL+E   IKC+KFPLVY V L RA L++A+SP     TK+L   P P + D+LEV  V +     A  G+   N C             GL ++Q  DRLTHVNG+ V S+K VQ +L++           + D+   V ++LLRK+NP+A Y+++DDP++ S+SSS SS +S   +    +++ Q +S+L+++++GGGCISFSPSSPS +S LV++GA   +S    R+  S    LQPYESWGD+ + +   Y PLWCFP+F YL+QAGD+LPS+AR+FG+ +DVLRRDNRDKF++GE AGVL +GQKLRVRN               G    +GR GG AG   V++  S
Sbjct:    3 MDYYGDDSFKQ--KQELAMPLLEERSRIKCVKFPLVYHVLLPRAMLIEAVSPGP-WRTKRLHFGPFPAFADVLEVLQVQSSSDVHALGGQESHNFCDKQAP-------PGLGYLQRHDRLTHVNGRIVHSLKHVQEILLEMEEDGACDSREARDKGSEVRIQLLRKKNPYAVYMDVDDPASPSTSSSFSSSDSCHSFH---EDSGQTSSLLALVLSGGGCISFSPSSPSFAS-LVTSGAGPGSSRRPCRV--SSLESLQPYESWGDEASLERTHYMPLWCFPLFHYLVQAGDSLPSIARTFGVSVDVLRRDNRDKFRLGEAAGVLSAGQKLRVRN--------------RGXXXXKGR-GGHAGVSRVVRTPS 344
The following BLAST results are available for this feature:
BLAST of NO14G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855179.11.200e-6344.77threonyl-tRNA synthetase, partial [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02370NO14G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02370.1NO14G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02370.1.cds1NO14G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02370.1 ID=NO14G02370.1|Name=NO14G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp
AAGCAAACCTGCAGGCTTTCATGGACCATGACCACGACGACCCGCTATTT
CAGCTGCACAAGCTTCAGCTCTCGACGCCCTTGCTCGATGAGCCTATTTT
GATAAAGTGCATCAAATTTCCACTTGTCTACTTGGTGAGTTTGTCCCGGG
CGTCTTTACTCAAAGCCCTGTCTCCTCGTCAGGACATTGAGACCAAACAA
TTGCAGATAGCGCCTTCGCCTGTCTACCCCGACATCCTGGAAGTACGGCA
CGTTCATGCTTTCGAGGCCTTCGATGGGGAGGCATACCCGAACGAGTGTC
ACCACCATCCGCAGCATCGCTCTGCAGCGTTACACTCAGGCCTGGCCCAC
ATACAGGAACAAGACCGCCTAACGCACGTGAATGGACAGCCCGTATTTTC
GATCAAGCAGGTTCAGCACTTGCTTATTCAAAGCGGGGACGAGGAGGAGA
TAGTGGCCGTACGGCTACTGCGCAAGGAGAATCCTCATGCCGAGTACGTA
AACATGGATGATCCCTCCACCTCTTCGTCCTCTTCCTCCATCTCCTCCGG
TGAGTCTTCTTCCTACTATTCTTCTTCGCCAGACGAAAATGACCAGTACA
CTTCAATTTTGTCCATGCTCATGACTGGGGGAGGCTGTATCTCCTTCTCC
CCCTCCTCGCCCTCCCTCTCTTCCTCCCTGGTAAGCACCGGCGCCAGCGC
CAGCACCAGCTCCAGCAGCAAGCGCCTTAATCAGTCACGATACATGCCGT
TACAGCCCTATGAATCATGGGGAGACAAAACAAATCCAGATCACGCATTC
TACGAGCCGTTGTGGTGCTTCCCTATCTTCATCTACCTCATCCAGGCAGG
GGATACGTTGCCCTCGCTAGCTCGGTCCTTCGGTCTCAAAATCGATGTCT
TGCGAAGGGACAACAGAGATAAATTCAAGGTAGGCGAGCCAGCAGGTGTG
TTGATATCAGGACAGAAGCTCAGGGTCAGAAATGTAGAATATGATGGGAA
GGCGACGGCGGCCTGGGTGGCACGAGGCGGTGGATTGGGGGGACGAGGTA
GGGAGGGAGGAAGGGCTGGAGGAGGGGTGGTGATGAAGATGTCGAGTTCG
GAGGAGGACGACGAGGATGAGGGGTTCGGGTACTGTTGGAGGGAGGGATG
GAAGCATCAGCATCGGCAGCAAGAGCAGCATCCGCAAAGGCAGCAGCAGG
AGCAGCAGCAGAGGAGGAGGCAGCATGTGGTGGTGAGGGGAGAGACGATG
AAGGGGTTGTGTGCCCGTTACGGAGTGAGCGAACTCGATATCCGAAGGGC
CAATCGCAATTACTTCCCTGTAGGGGAACAAAGCTTTCTAGAGGAGGGAA
TGCGCTTAATTATCTTTCCTAGTGCTGCTCCTGCTGCTGTTTCCGCTGTC
ACTGCTGCTACTTCGTACATATCTCCCTCGGCCGTTGGGGTGCTGTGGAA
GGGAAAAGGCGGGGCGTCGTCGCCGCTATCGTCCTCTCCGCGGACCAGCA
GCAGTGGGAGTTACAGTAGCAGTGATAGTAGTAGTAGTCGTGGGAGTGGG
GGAGGGAAGGAGGGAGGGATGGAGGGAGGGGGGAGTGGCCGACCCGTCCT
GTTTCCAGTAGTGGATCTTGGGGGAGTTGTATAGGGGGGAGGAGATAGCG
AGCAAGAAACACCGAGAGCGCAAGATTCAGAGAGCGGAGAAGAAGAGGAG
GAGGAAAAAGATGAAGAGGAAGAGGATGAGGGATGAGTGTATGTAAGGGT
GAAGAAAAAAACATATGTTGATACAAATTAAGTGTACAAGAGGAAGGGAG
GACGAAGAGTAAAAATAATCCTGTTTCGAGAGAGTGGTGGGTGCGTGAGA
TGCGTGAGAAAGAGGCCTGTATTGTACTCATTAAACGGGGACGAAAAGTG
GGAGGGGGGGAAGGAGCGTTCTGCATGTGTGCGTGTGTACGAGATATCGA
CACACATTTTAAATGATCACAACTACTTAACACAACCAATTATGCATGAT
TGAGGCGGGGAGCGTGTGACAAGTGACGGGAAGGAGATGGAAGCATATAG
AGAGAGGGAAGATGAGGAGGGAGAGGGAGAAAGGGGGGAGGGAAAACAAG
AGCAAAGAAAGACGAAGGATGTGTGTATGTCTGCGGACCCGTCTCCGACA
GAGAAAAAGAGGAGAGAGAGGAGAAAGGTTGAGGTACGAGAAATGAATAA
TTACCGACAGCCAAACGCA
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protein sequence of NO14G02370.1

>NO14G02370.1-protein ID=NO14G02370.1-protein|Name=NO14G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp
MDHDHDDPLFQLHKLQLSTPLLDEPILIKCIKFPLVYLVSLSRASLLKAL
SPRQDIETKQLQIAPSPVYPDILEVRHVHAFEAFDGEAYPNECHHHPQHR
SAALHSGLAHIQEQDRLTHVNGQPVFSIKQVQHLLIQSGDEEEIVAVRLL
RKENPHAEYVNMDDPSTSSSSSSISSGESSSYYSSSPDENDQYTSILSML
MTGGGCISFSPSSPSLSSSLVSTGASASTSSSSKRLNQSRYMPLQPYESW
GDKTNPDHAFYEPLWCFPIFIYLIQAGDTLPSLARSFGLKIDVLRRDNRD
KFKVGEPAGVLISGQKLRVRNVEYDGKATAAWVARGGGLGGRGREGGRAG
GGVVMKMSSSEEDDEDEGFGYCWREGWKHQHRQQEQHPQRQQQEQQQRRR
QHVVVRGETMKGLCARYGVSELDIRRANRNYFPVGEQSFLEEGMRLIIFP
SAAPAAVSAVTAATSYISPSAVGVLWKGKGGASSPLSSSPRTSSSGSYSS
SDSSSSRGSGGGKEGGMEGGGSGRPVLFPVVDLGGVV*
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mRNA from alignment at chr14:704501..706719+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02370.1 ID=NO14G02370.1|Name=NO14G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp|location=Sequence derived from alignment at chr14:704501..706719+ (Nannochloropsis oceanica)
AAGCAAACCTGCAGGCTTTCATGGACCATGACCACGACGACCCGCTATTT
CAGCTGCACAAGCTTCAGCTCTCGACGCCCTTGCTCGATGAGCCTATTTT
GATAAAGTGCATCAAATTTCCACTTGTCTACTTGGTGAGTTTGTCCCGGG
CGTCTTTACTCAAAGCCCTGTCTCCTCGTCAGGACATTGAGACCAAACAA
TTGCAGATAGCGCCTTCGCCTGTCTACCCCGACATCCTGGAAGTACGGCA
CGTTCATGCTTTCGAGGCCTTCGATGGGGAGGCATACCCGAACGAGTGTC
ACCACCATCCGCAGCATCGCTCTGCAGCGTTACACTCAGGCCTGGCCCAC
ATACAGGAACAAGACCGCCTAACGCACGTGAATGGACAGCCCGTATTTTC
GATCAAGCAGGTTCAGCACTTGCTTATTCAAAGCGGGGACGAGGAGGAGA
TAGTGGCCGTACGGCTACTGCGCAAGGAGAATCCTCATGCCGAGTACGTA
AACATGGATGATCCCTCCACCTCTTCGTCCTCTTCCTCCATCTCCTCCGG
TGAGTCTTCTTCCTACTATTCTTCTTCGCCAGACGAAAATGACCAGTACA
CTTCAATTTTGTCCATGCTCATGACTGGGGGAGGCTGTATCTCCTTCTCC
CCCTCCTCGCCCTCCCTCTCTTCCTCCCTGGTAAGCACCGGCGCCAGCGC
CAGCACCAGCTCCAGCAGCAAGCGCCTTAATCAGTCACGATACATGCCGT
TACAGCCCTATGAATCATGGGGAGACAAAACAAATCCAGATCACGCATTC
TACGAGCCGTTGTGGTGCTTCCCTATCTTCATCTACCTCATCCAGGCAGG
GGATACGTTGCCCTCGCTAGCTCGGTCCTTCGGTCTCAAAATCGATGTCT
TGCGAAGGGACAACAGAGATAAATTCAAGGTAGGCGAGCCAGCAGGTGTG
TTGATATCAGGACAGAAGCTCAGGGTCAGAAATGTAGAATATGATGGGAA
GGCGACGGCGGCCTGGGTGGCACGAGGCGGTGGATTGGGGGGACGAGGTA
GGGAGGGAGGAAGGGCTGGAGGAGGGGTGGTGATGAAGATGTCGAGTTCG
GAGGAGGACGACGAGGATGAGGGGTTCGGGTACTGTTGGAGGGAGGGATG
GAAGCATCAGCATCGGCAGCAAGAGCAGCATCCGCAAAGGCAGCAGCAGG
AGCAGCAGCAGAGGAGGAGGCAGCATGTGGTGGTGAGGGGAGAGACGATG
AAGGGGTTGTGTGCCCGTTACGGAGTGAGCGAACTCGATATCCGAAGGGC
CAATCGCAATTACTTCCCTGTAGGGGAACAAAGCTTTCTAGAGGAGGGAA
TGCGCTTAATTATCTTTCCTAGTGCTGCTCCTGCTGCTGTTTCCGCTGTC
ACTGCTGCTACTTCGTACATATCTCCCTCGGCCGTTGGGGTGCTGTGGAA
GGGAAAAGGCGGGGCGTCGTCGCCGCTATCGTCCTCTCCGCGGACCAGCA
GCAGTGGGAGTTACAGTAGCAGTGATAGTAGTAGTAGTCGTGGGAGTGGG
GGAGGGAAGGAGGGAGGGATGGAGGGAGGGGGGAGTGGCCGACCCGTCCT
GTTTCCAGTAGTGGATCTTGGGGGAGTTGTATAGGGGGGAGGAGATAGCG
AGCAAGAAACACCGAGAGCGCAAGATTCAGAGAGCGGAGAAGAAGAGGAG
GAGGAAAAAGATGAAGAGGAAGAGGATGAGGGATGAGTGTATGTAAGGGT
GAAGAAAAAAACATATGTTGATACAAATTAAGTGTACAAGAGGAAGGGAG
GACGAAGAGTAAAAATAATCCTGTTTCGAGAGAGTGGTGGGTGCGTGAGA
TGCGTGAGAAAGAGGCCTGTATTGTACTCATTAAACGGGGACGAAAAGTG
GGAGGGGGGGAAGGAGCGTTCTGCATGTGTGCGTGTGTACGAGATATCGA
CACACATTTTAAATGATCACAACTACTTAACACAACCAATTATGCATGAT
TGAGGCGGGGAGCGTGTGACAAGTGACGGGAAGGAGATGGAAGCATATAG
AGAGAGGGAAGATGAGGAGGGAGAGGGAGAAAGGGGGGAGGGAAAACAAG
AGCAAAGAAAGACGAAGGATGTGTGTATGTCTGCGGACCCGTCTCCGACA
GAGAAAAAGAGGAGAGAGAGGAGAAAGGTTGAGGTACGAGAAATGAATAA
TTACCGACAGCCAAACGCA
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Coding sequence (CDS) from alignment at chr14:704501..706719+

>NO14G02370.1 ID=NO14G02370.1|Name=NO14G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=1614bp|location=Sequence derived from alignment at chr14:704501..706719+ (Nannochloropsis oceanica)
ATGGACCATGACCACGACGACCCGCTATTTCAGCTGCACAAGCTTCAGCT
CTCGACGCCCTTGCTCGATGAGCCTATTTTGATAAAGTGCATCAAATTTC
CACTTGTCTACTTGGTGAGTTTGTCCCGGGCGTCTTTACTCAAAGCCCTG
TCTCCTCGTCAGGACATTGAGACCAAACAATTGCAGATAGCGCCTTCGCC
TGTCTACCCCGACATCCTGGAAGTACGGCACGTTCATGCTTTCGAGGCCT
TCGATGGGGAGGCATACCCGAACGAGTGTCACCACCATCCGCAGCATCGC
TCTGCAGCGTTACACTCAGGCCTGGCCCACATACAGGAACAAGACCGCCT
AACGCACGTGAATGGACAGCCCGTATTTTCGATCAAGCAGGTTCAGCACT
TGCTTATTCAAAGCGGGGACGAGGAGGAGATAGTGGCCGTACGGCTACTG
CGCAAGGAGAATCCTCATGCCGAGTACGTAAACATGGATGATCCCTCCAC
CTCTTCGTCCTCTTCCTCCATCTCCTCCGGTGAGTCTTCTTCCTACTATT
CTTCTTCGCCAGACGAAAATGACCAGTACACTTCAATTTTGTCCATGCTC
ATGACTGGGGGAGGCTGTATCTCCTTCTCCCCCTCCTCGCCCTCCCTCTC
TTCCTCCCTGGTAAGCACCGGCGCCAGCGCCAGCACCAGCTCCAGCAGCA
AGCGCCTTAATCAGTCACGATACATGCCGTTACAGCCCTATGAATCATGG
GGAGACAAAACAAATCCAGATCACGCATTCTACGAGCCGTTGTGGTGCTT
CCCTATCTTCATCTACCTCATCCAGGCAGGGGATACGTTGCCCTCGCTAG
CTCGGTCCTTCGGTCTCAAAATCGATGTCTTGCGAAGGGACAACAGAGAT
AAATTCAAGGTAGGCGAGCCAGCAGGTGTGTTGATATCAGGACAGAAGCT
CAGGGTCAGAAATGTAGAATATGATGGGAAGGCGACGGCGGCCTGGGTGG
CACGAGGCGGTGGATTGGGGGGACGAGGTAGGGAGGGAGGAAGGGCTGGA
GGAGGGGTGGTGATGAAGATGTCGAGTTCGGAGGAGGACGACGAGGATGA
GGGGTTCGGGTACTGTTGGAGGGAGGGATGGAAGCATCAGCATCGGCAGC
AAGAGCAGCATCCGCAAAGGCAGCAGCAGGAGCAGCAGCAGAGGAGGAGG
CAGCATGTGGTGGTGAGGGGAGAGACGATGAAGGGGTTGTGTGCCCGTTA
CGGAGTGAGCGAACTCGATATCCGAAGGGCCAATCGCAATTACTTCCCTG
TAGGGGAACAAAGCTTTCTAGAGGAGGGAATGCGCTTAATTATCTTTCCT
AGTGCTGCTCCTGCTGCTGTTTCCGCTGTCACTGCTGCTACTTCGTACAT
ATCTCCCTCGGCCGTTGGGGTGCTGTGGAAGGGAAAAGGCGGGGCGTCGT
CGCCGCTATCGTCCTCTCCGCGGACCAGCAGCAGTGGGAGTTACAGTAGC
AGTGATAGTAGTAGTAGTCGTGGGAGTGGGGGAGGGAAGGAGGGAGGGAT
GGAGGGAGGGGGGAGTGGCCGACCCGTCCTGTTTCCAGTAGTGGATCTTG
GGGGAGTTGTATAG
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Synonyms
Publications