NO14G02340, NO14G02340 (gene) Nannochloropsis oceanica

Overview
NameNO14G02340
Unique NameNO14G02340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr14:697657..698328 -

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Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit F
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:697657..698328 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR037518MPN
IPR027531eIF3f
IPR000555JAMM/MPN+_dom
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Homology
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_009841269.1 (hypothetical protein H257_14997 [Aphanomyces astaci] >ETV69412.1 hypothetical protein H257_14997 [Aphanomyces astaci])

HSP 1 Score: 132.9 bits (333), Expect = 1.200e-27
Identity = 75/191 (39.27%), Postives = 108/191 (56.54%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVG--NVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVA 210
            V +HPVVVF ILD Y RR E    R+IGTLLG V     VV + N+F VPH EK ++VA+G+DYHR M     R+N  E +VGWYAT    G  +N NS +IH FY+         A  VH+V D ++    ++I  ++S+A+ ++   +AN F QVK+   +   E + L+ M +      + + +E  A
Sbjct:   15 VNIHPVVVFQILDRYLRRAE-DQERIIGTLLGVVDSEHGVVTVSNSFPVPHLEKGDDVAVGKDYHRQMLLLHQRVNPNEVVVGWYATASADGSVVNENSCLIHDFYSAEC------AAPVHIVTDTSLRGDNLNISGFISSALTVADVALANQFKQVKVQTKTYEAESIALNVMAKASTAALSSLPTELEA 198          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: OQR88071.1 (eukaryotic translation initiation factor 3 subunit F [Achlya hypogyna])

HSP 1 Score: 132.1 bits (331), Expect = 2.100e-27
Identity = 81/191 (42.41%), Postives = 115/191 (60.21%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVG--NVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVA 210
            V VHPVVVF ILD + RR +    RVIGTLLG V     VV I N+F VPH EK +EVA+G+DYHR M     R+N  E +VGWYAT+     A+N NS +IH FY+         A  VH+VVD ++ +  ++I  ++S+A++++   +AN F QVK++  +   E + LD M + +  E A + S+  A
Sbjct:   13 VHVHPVVVFQILDRFLRRAQ-DQKRVIGTLLGVVDAEHGVVTISNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGWYATSTT-AEAINENSCLIHEFYSAEC------ATPVHVVVDTSLQTDNLNIMGFISSALSVADVALANQFKQVKVETKTYEAEAIALDVMAK-RSSEAASLPSDLEA 194          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: PVD35283.1 (hypothetical protein C0Q70_06565 [Pomacea canaliculata])

HSP 1 Score: 132.1 bits (331), Expect = 2.100e-27
Identity = 73/183 (39.89%), Postives = 107/183 (58.47%), Query Frame = 0
Query:   18 NVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREK 201
            N+  K+HPVV F I+D Y RR E    RVIGTLLG     VVE+ N F VPH E E+EVA+  DY R+MY    ++N  E IVGWY+T LE    ++ +S++IH +Y+  A         +HL VD  +  G++ +KAY+ST + + G     +F  V+++  S  PE+  L+ + +G+   K
Sbjct:   59 NLVCKIHPVVYFSIIDSYERRNEDSK-RVIGTLLGVYDKGVVEVTNCFAVPHNESEDEVAVDIDYARSMYELHRKVNSSETIVGWYSTGLE----VSVHSVLIHEYYSREA------RSPIHLTVDTFMRGGKMGMKAYISTTIGVPGKTTGTMFTPVQVETTSYDPEQTGLEVLQQGKFNPK 230          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: GAX92451.1 (eukaryotic translation initiation factor 3 subunit F, putative, partial [Pythium insidiosum])

HSP 1 Score: 131.3 bits (329), Expect = 3.600e-27
Identity = 78/204 (38.24%), Postives = 112/204 (54.90%), Query Frame = 0
Query:    6 STADALFVDNVQNVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVA 210
            S A+ L +        KVHPVVVF ILD   RR E    RVIGTLLG +   V EI N+F VPH    +EVA+G+DYH  MY    R+N+ E IVGWYATT  G   L+  S +IH FY    ++       VHLVVD ++ + ++++ A+VS+ + +      N F Q+++    + PE + L+ M    ++ +   A E  +
Sbjct:    2 SAANQLLLSTEAVCEAKVHPVVVFQILDRALRRSEEQD-RVIGTLLGRIENGVAEITNSFAVPHLVNGDEVAVGKDYHTQMYELHQRVNENEIIVGWYATTANGA-LLDDYSCLIHEFYGSVCENP------VHLVVDTSLRADQLNVSAFVSSPLELVENAAVNQFKQIQVQQKVSEPEAIALNAMATSDKKTQGEDAREVTS 197          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: OQS00143.1 (eukaryotic translation initiation factor 3 subunit F [Thraustotheca clavata])

HSP 1 Score: 128.6 bits (322), Expect = 2.400e-26
Identity = 80/195 (41.03%), Postives = 112/195 (57.44%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVG--NVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVATVLP 214
            V VHPVVVF +LD + RR E    RVIGTLLG V     VV I N+F VPH EK +EVA+G+DYHR M     R+N  E +VGWYAT+ +    +N NS +IH FY+            VH+VV+ ++AS  +++ A+ S+A+ ++   +AN F QVK++  +   E + L+ M +            T AT LP
Sbjct: 1533 VHVHPVVVFQVLDRFLRRAE-DQKRVIGTLLGLVDAEHGVVTITNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGWYATSSD-SEPINENSCLIHDFYSSECPSP------VHVVVNTSLASDSLNLMAFTSSALQVADVALANQFKQVKVETKTYEAEAIALNLMAK----------RSTEATTLP 1709          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: OEU09516.1 (hypothetical protein FRACYDRAFT_271363 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 127.9 bits (320), Expect = 4.000e-26
Identity = 71/177 (40.11%), Postives = 105/177 (59.32%), Query Frame = 0
Query:   31 ILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGR-------ALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREK 201
            +LDH+ RR E    RVIGTLLG   G  VE+ N F VPHAE+ +EVA+G+D+++ M +   R N KE +VGWYA+   G          + + S +IH FYA  +D G      VHLVVD  +    ++ + Y ST V + G P+AN+FH+++L + ++ PE + L RM+   + +K
Sbjct:    4 VLDHHTRRQEASG-RVIGTLLGRRDGKKVEVTNCFAVPHAERGDEVAIGKDFNKQMLALHLRANRKETVVGWYASAALGDEDNEEVPDLIANTSSLIHEFYAEESDEGDP----VHLVVDTRLIEDAITARVYRSTPVVVQGEPMANMFHELRLTLKNSEPETLALHRMVADSKGKK 175          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_005092932.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit F-like [Aplysia californica])

HSP 1 Score: 127.5 bits (319), Expect = 5.200e-26
Identity = 69/179 (38.55%), Postives = 107/179 (59.78%), Query Frame = 0
Query:   22 KVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREK 201
            KVHPVV F ++D Y RR E    RVIGTLLGTV   VVE+ N F VPH E ++EVA+  +Y R M+    ++N  E IVGW++T    G  ++ +S++IH +Y+    +       VHL VD  +  G++SIK Y ST + + G     +F  V+++ ++  PE+V ++ + +G+  +K
Sbjct:    9 KVHPVVFFSVIDAYERRNEDAK-RVIGTLLGTVDKGVVEVTNCFAVPHNESDDEVAVDIEYARNMFELHKKVNSNEAIVGWFST----GWEVSVHSVLIHDYYSRETKNP------VHLTVDTIMRGGKMSIKGYHSTLIGVPGKTTGTMFTPVQVETITYDPEQVGVETLQKGKYNQK 176          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: PKA62400.1 (Eukaryotic translation initiation factor 3 subunit F [Apostasia shenzhenica])

HSP 1 Score: 127.5 bits (319), Expect = 5.200e-26
Identity = 75/187 (40.11%), Postives = 105/187 (56.15%), Query Frame = 0
Query:    5 GSTADALFVDNVQNVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTV-VGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLD 191
            GS     F  +   V  ++HPVV+F I D Y RRP+    RVIGTLLG+V     +EI N++ VPH E  ++VAL  DYH  +Y+   ++N KE IVGWY+T    G  ++  S +IH FY+         A  VHL VD    +G  SIKAYVS  +++   P+A  F+++ LD+     E+V  D
Sbjct:    4 GSKTTLQFHPSTATVSARIHPVVLFNICDCYVRRPDQAE-RVIGTLLGSVSTDGTIEIKNSYAVPHNESADQVALDIDYHHTLYASHQKVNPKEVIVGWYST----GCDVSGGSALIHEFYSREV------ANPVHLTVDTGFTNGEASIKAYVSFNLSLGDRPLAAQFNEIPLDLRMIEAERVGFD 179          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_009403465.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit F [Musa acuminata subsp. malaccensis])

HSP 1 Score: 126.7 bits (317), Expect = 9.000e-26
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 0
Query:   19 VHVKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGAR-------LVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLD 191
            V  ++HPVV+F I D Y RRP+    RVIGTLLGTV G VVEI N++ VPH E  ++VAL  +YHR MY    ++N KE +VGWY+T    G  ++  S +IH FY           R        VHL VD   ++G  SIKAY+S  +++    +A  F ++ LD+     E+V  D
Sbjct:   14 VSARLHPVVLFSICDCYVRRPDQAD-RVIGTLLGTVSGGVVEIKNSYAVPHNESADQVALDVEYHRNMYMSHLKVNPKEVLVGWYST----GFGVSGGSALIHDFYVKELKDSTKDIREAQNSVPPVHLTVDTVFSNGEASIKAYMSVNLSLGDRSLAAQFQEIPLDLRMIEAERVGFD 187          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_021352187.1 (eukaryotic translation initiation factor 3 subunit F-like [Mizuhopecten yessoensis] >OWF51165.1 Eukaryotic translation initiation factor 3 subunit F [Mizuhopecten yessoensis])

HSP 1 Score: 126.7 bits (317), Expect = 9.000e-26
Identity = 72/190 (37.89%), Postives = 108/190 (56.84%), Query Frame = 0
Query:   18 NVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASET 208
            N+  +VHPVV+F I+D Y RR E    RVIGTLLG      VE+ N F VPH E E+EVA   +Y R MY    ++N  E IVGWY+T    G  ++ +S++IH +YA  A         VHL VD  +   ++ +KAY+ST + +    +  +F  V+++ ++  PE+V +D + +G+   K  +A  T
Sbjct:    4 NLVCRVHPVVLFSIIDSYERRNEDAK-RVIGTLLGVYDKGAVEVTNCFAVPHNESEDEVAADLEYARNMYELHKKVNAAEVIVGWYST----GSEVSEHSVLIHEYYAREAKSP------VHLTVDTTLKGSKMDVKAYISTPIGVPNKTMGCMFTAVQVETITYTPERVGVDLIQQGKLNPKRSVAMVT 182          
The following BLAST results are available for this feature:
BLAST of NO14G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009841269.11.200e-2739.27hypothetical protein H257_14997 [Aphanomyces astac... [more]
OQR88071.12.100e-2742.41eukaryotic translation initiation factor 3 subunit... [more]
PVD35283.12.100e-2739.89hypothetical protein C0Q70_06565 [Pomacea canalicu... [more]
GAX92451.13.600e-2738.24eukaryotic translation initiation factor 3 subunit... [more]
OQS00143.12.400e-2641.03eukaryotic translation initiation factor 3 subunit... [more]
OEU09516.14.000e-2640.11hypothetical protein FRACYDRAFT_271363 [Fragilario... [more]
XP_005092932.15.200e-2638.55PREDICTED: eukaryotic translation initiation facto... [more]
PKA62400.15.200e-2640.11Eukaryotic translation initiation factor 3 subunit... [more]
XP_009403465.19.000e-2641.34PREDICTED: eukaryotic translation initiation facto... [more]
XP_021352187.19.000e-2637.89eukaryotic translation initiation factor 3 subunit... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02340.1NO14G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02340.1NO14G02340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02340 ID=NO14G02340|Name=NO14G02340|organism=Nannochloropsis oceanica|type=gene|length=672bp
ATGGCGTTGCAGGGCTCCACGGCCGACGCCCTGTTCGTTGACAACGTGCA
AAATGTCCATGTCAAGGTCCACCCCGTTGTTGTCTTCGGCATCCTCGACC
ACTACAATCGTCGCCCTGAACCAGGGCCTGTCCGCGTTATCGGTACGCTG
CTCGGAACGGTGGTGGGAAATGTGGTGGAGATTCACAATGCTTTTGGGGT
GCCGCATGCAGAGAAGGAAAATGAGGTTGCTTTGGGGCAGGACTATCATC
GCGCGATGTACTCGCATTTCACGCGGATCAACGACAAGGAGCGGATTGTG
GGCTGGTATGCGACTACCTTGGAAGGGGGACGGGCCCTGAATTCTAACAG
CATCATTATCCATGGGTTCTATGCAGGGAATGCTGATCACGGGGCAGGAG
GAGCGAGGCTCGTCCATCTGGTGGTCGACGCCGCGGTAGCTTCAGGCAGG
GTGTCAATCAAAGCGTACGTCAGCACGGCAGTCAATATCAGTGGTGCTCC
TGTCGCGAACATCTTTCATCAGGTGAAGTTAGATGTGGTAAGCACGGCCC
CAGAAAAGGTTTGTTTGGATAGAATGATTCGGGGTCAGGAGAGGGAGAAG
GCATGGATGGCGAGCGAAACAGTGGCCACGGTGCTGCCGGGGGGGGGGCA
GCAGCCGCGAGGGAGGACCTAG
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protein sequence of NO14G02340.1

>NO14G02340.1-protein ID=NO14G02340.1-protein|Name=NO14G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MALQGSTADALFVDNVQNVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTL
LGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIV
GWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGR
VSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREK
AWMASETVATVLPGGGQQPRGRT*
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Synonyms
Publications