NO14G02340.1, NO14G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02340.1
Unique NameNO14G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr14:697657..698328 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:697657..698328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02340.1 vs.
Match: EWM24586.1 (JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana])

HSP 1 Score: 368.6 bits (945), Expect = 1.400e-98
Identity = 188/220 (85.45%), Postives = 200/220 (90.91%), Query Frame = 0 
Query:    1 MALQGSTADALFVDNVQNVHVKVHPVVVFGILDHYNRRPEPGPV----RVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVATVLPGGG 217
            MALQGSTADALFVD+VQNVHV+VHPVV+FGILDHYNRRPE GP     RVIGTLLGTVVGNVV+IHNAFGVPHAE  NEVALGQDYHR MY+ FTRINDKERIVGWYATTLE GRALNSNSIIIHGFYAGN+D  A GARLVHLVVDAAVASGRV+IKAYVSTAV+ISGAPVANIFHQVK+ VVSTAPE+VCLDRM+RGQ REKAW  S+T A VLPGGG
Sbjct:    1 MALQGSTADALFVDSVQNVHVEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSD--AAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGG 218
The following BLAST results are available for this feature:
BLAST of NO14G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24586.11.400e-9885.45JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02340NO14G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02340.1NO14G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02340.1.cds1NO14G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02340.1 ID=NO14G02340.1|Name=NO14G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGGCGTTGCAGGGCTCCACGGCCGACGCCCTGTTCGTTGACAACGTGCA
AAATGTCCATGTCAAGGTCCACCCCGTTGTTGTCTTCGGCATCCTCGACC
ACTACAATCGTCGCCCTGAACCAGGGCCTGTCCGCGTTATCGGTACGCTG
CTCGGAACGGTGGTGGGAAATGTGGTGGAGATTCACAATGCTTTTGGGGT
GCCGCATGCAGAGAAGGAAAATGAGGTTGCTTTGGGGCAGGACTATCATC
GCGCGATGTACTCGCATTTCACGCGGATCAACGACAAGGAGCGGATTGTG
GGCTGGTATGCGACTACCTTGGAAGGGGGACGGGCCCTGAATTCTAACAG
CATCATTATCCATGGGTTCTATGCAGGGAATGCTGATCACGGGGCAGGAG
GAGCGAGGCTCGTCCATCTGGTGGTCGACGCCGCGGTAGCTTCAGGCAGG
GTGTCAATCAAAGCGTACGTCAGCACGGCAGTCAATATCAGTGGTGCTCC
TGTCGCGAACATCTTTCATCAGGTGAAGTTAGATGTGGTAAGCACGGCCC
CAGAAAAGGTTTGTTTGGATAGAATGATTCGGGGTCAGGAGAGGGAGAAG
GCATGGATGGCGAGCGAAACAGTGGCCACGGTGCTGCCGGGGGGGGGGCA
GCAGCCGCGAGGGAGGACCTAG
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protein sequence of NO14G02340.1

>NO14G02340.1-protein ID=NO14G02340.1-protein|Name=NO14G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MALQGSTADALFVDNVQNVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTL
LGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIV
GWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGR
VSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREK
AWMASETVATVLPGGGQQPRGRT*
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mRNA from alignment at chr14:697657..698328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02340.1 ID=NO14G02340.1|Name=NO14G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=672bp|location=Sequence derived from alignment at chr14:697657..698328- (Nannochloropsis oceanica)
ATGGCGTTGCAGGGCTCCACGGCCGACGCCCTGTTCGTTGACAACGTGCA
AAATGTCCATGTCAAGGTCCACCCCGTTGTTGTCTTCGGCATCCTCGACC
ACTACAATCGTCGCCCTGAACCAGGGCCTGTCCGCGTTATCGGTACGCTG
CTCGGAACGGTGGTGGGAAATGTGGTGGAGATTCACAATGCTTTTGGGGT
GCCGCATGCAGAGAAGGAAAATGAGGTTGCTTTGGGGCAGGACTATCATC
GCGCGATGTACTCGCATTTCACGCGGATCAACGACAAGGAGCGGATTGTG
GGCTGGTATGCGACTACCTTGGAAGGGGGACGGGCCCTGAATTCTAACAG
CATCATTATCCATGGGTTCTATGCAGGGAATGCTGATCACGGGGCAGGAG
GAGCGAGGCTCGTCCATCTGGTGGTCGACGCCGCGGTAGCTTCAGGCAGG
GTGTCAATCAAAGCGTACGTCAGCACGGCAGTCAATATCAGTGGTGCTCC
TGTCGCGAACATCTTTCATCAGGTGAAGTTAGATGTGGTAAGCACGGCCC
CAGAAAAGGTTTGTTTGGATAGAATGATTCGGGGTCAGGAGAGGGAGAAG
GCATGGATGGCGAGCGAAACAGTGGCCACGGTGCTGCCGGGGGGGGGGCA
GCAGCCGCGAGGGAGGACCTAG
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Coding sequence (CDS) from alignment at chr14:697657..698328-

>NO14G02340.1 ID=NO14G02340.1|Name=NO14G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr14:697657..698328- (Nannochloropsis oceanica)
ATGGCGTTGCAGGGCTCCACGGCCGACGCCCTGTTCGTTGACAACGTGCA
AAATGTCCATGTCAAGGTCCACCCCGTTGTTGTCTTCGGCATCCTCGACC
ACTACAATCGTCGCCCTGAACCAGGGCCTGTCCGCGTTATCGGTACGCTG
CTCGGAACGGTGGTGGGAAATGTGGTGGAGATTCACAATGCTTTTGGGGT
GCCGCATGCAGAGAAGGAAAATGAGGTTGCTTTGGGGCAGGACTATCATC
GCGCGATGTACTCGCATTTCACGCGGATCAACGACAAGGAGCGGATTGTG
GGCTGGTATGCGACTACCTTGGAAGGGGGACGGGCCCTGAATTCTAACAG
CATCATTATCCATGGGTTCTATGCAGGGAATGCTGATCACGGGGCAGGAG
GAGCGAGGCTCGTCCATCTGGTGGTCGACGCCGCGGTAGCTTCAGGCAGG
GTGTCAATCAAAGCGTACGTCAGCACGGCAGTCAATATCAGTGGTGCTCC
TGTCGCGAACATCTTTCATCAGGTGAAGTTAGATGTGGTAAGCACGGCCC
CAGAAAAGGTTTGTTTGGATAGAATGATTCGGGGTCAGGAGAGGGAGAAG
GCATGGATGGCGAGCGAAACAGTGGCCACGGTGCTGCCGGGGGGGGGGCA
GCAGCCGCGAGGGAGGACCTAG
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Synonyms
Publications