NO14G02340, NO14G02340 (gene) Nannochloropsis oceanica

Overview
NameNO14G02340
Unique NameNO14G02340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr14:697657..698328 -

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Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit F
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:697657..698328 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR037518MPN
IPR027531eIF3f
IPR000555JAMM/MPN+_dom
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Homology
BLAST of NO14G02340 vs. NCBI_GenBank
Match: EWM24586.1 (JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana])

HSP 1 Score: 330.5 bits (846), Expect = 4.100e-87
Identity = 171/220 (77.73%), Postives = 183/220 (83.18%), Query Frame = 0
Query:    1 MALQGSTADALFVDNVQNVHVKVHPVVVFGILDHYNRRPE----PGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVATVLPGGG 217
            MALQGSTADALFVD+VQNVHV+VHPVV+FGILDHYNRRPE                       +IHNAFGVPHAE  NEVALGQDYHR MY+ FTRINDKERIVGWYATTLE GRALNSNSIIIHGFYAGN+D  A GARLVHLVVDAAVASGRV+IKAYVSTAV+ISGAPVANIFHQVK+ VVSTAPE+VCLDRM+RGQ REKAW  S+T A VLPGGG
Sbjct:    1 MALQGSTADALFVDSVQNVHVEVHPVVIFGILDHYNRRPEXXXXXXXXXXXXXXXXXXXXXXXQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSD--AAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGG 218          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: CBN74067.1 (translation initiation factor eIF3 f subunit [Ectocarpus siliculosus])

HSP 1 Score: 183.7 bits (465), Expect = 6.200e-43
Identity = 94/194 (48.45%), Postives = 137/194 (70.62%), Query Frame = 0
Query:   18 NVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVATV 212
            ++ VKVHP+V+F +LDHY RRPE    RVIGTLLGTV  NVVEI N+F VPH EK +EVA+G+D++++M +   R+N +E +VGWYAT+ +G   ++ +S +IH FY G  +      R VHLVVD A+ +  V  KA++ST + I G+ +AN+FH+VK+ +VS   E++C+DRM++GQ  E+A+   E +A V
Sbjct:   46 DIVVKVHPMVLFSVLDHYLRRPE-NQKRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGWYATSFDGVLIVDDSS-LIHDFYTGECE------RPVHLVVDTALKNNIVGCKAFISTPLEIDGSALANVFHEVKVSLVSAEAERICIDRMVKGQ--EEAFTTPEGLAEV 229          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: EJK73701.1 (hypothetical protein THAOC_04661 [Thalassiosira oceanica])

HSP 1 Score: 159.8 bits (403), Expect = 9.500e-36
Identity = 85/185 (45.95%), Postives = 119/185 (64.32%), Query Frame = 0
Query:   14 DNVQNVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEG-----GRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMI 194
            ++V    V VHP+V+  +LDH+ RR E G  RVIGTLLG   G+ VEI N+F VPHAE+ +EVA+G+D++R M S   R N +E +VGWYAT L          +   S +IH FYAG  D        +HLVVD A+ +  ++++AY ST V I G P+AN+FH+++L V S+  E++C+DRMI
Sbjct:   35 ESVPACQVNVHPLVLLSVLDHHTRRQE-GAGRVIGTLLGKRNGDTVEITNSFAVPHAERGDEVAIGKDFNRQMLSLHLRANPRETVVGWYATALPDEATGESHCIADTSSLIHEFYAGECDDDP-----IHLVVDTALKADAIALRAYKSTPVVIKGEPLANMFHEIRLSVRSSEAERICVDRMI 213          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_002296908.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED86636.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 155.2 bits (391), Expect = 2.400e-34
Identity = 82/200 (41.00%), Postives = 123/200 (61.50%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEG--------GRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVATVL 213
            V VHP+V+  +LDH+ RR E G  RVIGTLLG   G+ VEI N F VPHAE+ +EVA+G+D++R M +   R N +E ++GWYAT L           + +   S +IH FYA   +        +HLVVD ++ +  ++++AY ST V++ G P+AN+FH+++L V S+  E++C+DRMIR     +   AS+  +  L
Sbjct:    1 VLVHPIVLLSVLDHHTRRQE-GAGRVIGTLLGRRDGDKVEITNCFAVPHAERGDEVAIGKDFNRQMLALHLRANKRETVIGWYATALPDENDPVNGESKCIADTSSLIHEFYATECEDDP-----IHLVVDTSLETDAMALRAYKSTPVSVKGEPLANLFHEIRLAVKSSESERICVDRMIRSASSAEGAPASQDESAAL 194          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_002178743.1 (COP9 SigNalosome subunit 6, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49441.1 COP9 SigNalosome subunit 6, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 153.7 bits (387), Expect = 6.800e-34
Identity = 82/179 (45.81%), Postives = 112/179 (62.57%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEG-----GRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIR 195
            V VHPVV+  +LDH+ RR E    RVIGTLLG   GNVVE+ N F VPHAE+  EVA+G+D+++ M     R N KE +VGWYA+   G     G  +   S +IH FYAG AD G      VHLVVD  +    +S++A+ S+ + + G  + N+FH++KL + S  PE +CL++MIR
Sbjct:    1 VIVHPVVLLHVLDHHTRRQEESG-RVIGTLLGRQNGNVVEVTNCFSVPHAERGEEVAIGKDFNKTMLGLHLRANRKETVVGWYASAANGDSESNGDLITDTSSLIHDFYAGEADEGDP----VHLVVDTRLKEDSLSMRAFKSSQIVVQGEAMGNLFHELKLSLKSNEPEAICLNQMIR 174          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_008874547.1 (hypothetical protein H310_10078 [Aphanomyces invadans] >ETV96770.1 hypothetical protein H310_10078 [Aphanomyces invadans])

HSP 1 Score: 134.8 bits (338), Expect = 3.300e-28
Identity = 78/191 (40.84%), Postives = 106/191 (55.50%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVG--NVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWMASETVA 210
            V VHPVVVF ILD Y RR E    R+IGTLLG V     VV + N+F VPH EK ++VA+G+DYHR M     R+N  E +VGWY T    G  LN NS +IH FY+         A  VHLV D  +    + I  ++S+A+ ++   +AN F QVK+   +   E + LD M++    E   + ++  A
Sbjct:   16 VNVHPVVVFQILDRYLRRAE-DQERIIGTLLGVVDSEHGVVTVSNSFPVPHLEKGDDVAVGKDYHRQMLLLHQRVNPNEVVVGWYTTASADGSILNENSCLIHEFYSTEC------ATPVHLVTDTTLRGDSLDISGFISSALTVADVALANQFKQVKVVTKTYEAEAIALDAMVKASTAETTSLPTDLEA 199          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_013091294.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit F-like [Biomphalaria glabrata])

HSP 1 Score: 134.0 bits (336), Expect = 5.600e-28
Identity = 74/186 (39.78%), Postives = 113/186 (60.75%), Query Frame = 0
Query:   18 NVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREKAWM 204
            N+  KVHPVV+F I+D Y RR E    RVIGTLLG    +VVEI N F VPH E E+EVA+  +Y R MY    ++N  E IVGW++T    G  ++ +S++IH +Y+  A +       +HL VD  V  G++ IKAY ST++ + G     +F  V+++ +S  PE+V ++ + +G+  +K ++
Sbjct:    4 NLVCKVHPVVLFSIIDAYERRNEDAK-RVIGTLLGVAEKSVVEITNCFAVPHNESEDEVAVDIEYARNMYELHKKVNSNETIVGWFST----GSEVSVHSVLIHDYYSREAKNP------IHLTVDTFVRGGKMGIKAYHSTSIGVPGKTTGTMFTPVQVETISYDPEQVGVEVLQKGKHPQKRFV 178          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_009040210.1 (hypothetical protein AURANDRAFT_13838, partial [Aureococcus anophagefferens] >EGB05082.1 hypothetical protein AURANDRAFT_13838, partial [Aureococcus anophagefferens])

HSP 1 Score: 133.7 bits (335), Expect = 7.300e-28
Identity = 84/182 (46.15%), Postives = 109/182 (59.89%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTV--VGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGR-VSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQERE 200
            V VHP+VVFGILDHY RR E G  RVIGTLLG +     VVE+ NA+ VPH E   EVA+GQ ++++M+   +R+N +ER+VGWYAT   GG   +  + +IH FY+         A  VH+VVDA++  G+ V   AY        GA  A  F  V   +  +  EKVC+DRMIRGQ  E
Sbjct:    1 VIVHPIVVFGILDHYIRRQE-GQERVIGTLLGHLDEETGVVEVSNAYAVPHTESGGEVAVGQAFNKSMFGLLSRVNSEERVVGWYATG-GGGAVQDDGTALIHDFYSREC------AAPVHVVVDASLRDGKGVETAAYHRGPPGADGAAAA--FAPVPSSLTFSDGEKVCIDRMIRGQGDE 172          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_008609724.1 (hypothetical protein SDRG_05768 [Saprolegnia diclina VS20] >EQC36943.1 hypothetical protein SDRG_05768 [Saprolegnia diclina VS20])

HSP 1 Score: 133.7 bits (335), Expect = 7.300e-28
Identity = 79/176 (44.89%), Postives = 108/176 (61.36%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVG--NVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIR 195
            V VHPVVVF ILD + RR E    RVIGTLLG V     VV I N+F VPH EK +EVA+G+DYHR M     R+N  E +VGWYAT+     A+N NS +IH FY+         A  VH+VVD ++ S  ++I  ++S+A++++   +AN F QVK++  +   E + LD M +
Sbjct:   13 VHVHPVVVFQILDRFLRRGE-DQKRVIGTLLGVVDAEHGVVTISNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGWYATSTT-AEAINENSCLIHEFYSSEC------ASPVHVVVDTSLESDNLNIMGFISSALSVADVALANQFKQVKVETKTYEAESIALDVMAK 180          
BLAST of NO14G02340 vs. NCBI_GenBank
Match: XP_012196641.1 (hypothetical protein SPRG_02688 [Saprolegnia parasitica CBS 223.65] >KDO32997.1 hypothetical protein SPRG_02688 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 133.7 bits (335), Expect = 7.300e-28
Identity = 78/176 (44.32%), Postives = 108/176 (61.36%), Query Frame = 0
Query:   21 VKVHPVVVFGILDHYNRRPEPGPVRVIGTLLGTVVG--NVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIVGWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGRVSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIR 195
            V +HPVVVF ILD + RR E    RVIGTLLG V     VV I N+F VPH EK +EVA+G+DYHR M     R+N  E +VGWYAT+     A+N NS +IH FY+         A  VH+VVD ++ S  ++I  ++S+A++++   +AN F QVK++  +   E + LD M +
Sbjct:   13 VHIHPVVVFQILDRFLRRSE-DQKRVIGTLLGVVDAEHGVVTISNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGWYATSTT-AEAINENSCLIHEFYSSEC------ASPVHVVVDTSLESDNLNIMGFISSALSVADVALANQFKQVKVETKTYEAESIALDVMAK 180          
The following BLAST results are available for this feature:
BLAST of NO14G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24586.14.100e-8777.73JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana][more]
CBN74067.16.200e-4348.45translation initiation factor eIF3 f subunit [Ecto... [more]
EJK73701.19.500e-3645.95hypothetical protein THAOC_04661 [Thalassiosira oc... [more]
XP_002296908.12.400e-3441.00predicted protein, partial [Thalassiosira pseudona... [more]
XP_002178743.16.800e-3445.81COP9 SigNalosome subunit 6, partial [Phaeodactylum... [more]
XP_008874547.13.300e-2840.84hypothetical protein H310_10078 [Aphanomyces invad... [more]
XP_013091294.15.600e-2839.78PREDICTED: eukaryotic translation initiation facto... [more]
XP_009040210.17.300e-2846.15hypothetical protein AURANDRAFT_13838, partial [Au... [more]
XP_008609724.17.300e-2844.89hypothetical protein SDRG_05768 [Saprolegnia dicli... [more]
XP_012196641.17.300e-2844.32hypothetical protein SPRG_02688 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02340.1NO14G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02340.1NO14G02340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02340 ID=NO14G02340|Name=NO14G02340|organism=Nannochloropsis oceanica|type=gene|length=672bp
ATGGCGTTGCAGGGCTCCACGGCCGACGCCCTGTTCGTTGACAACGTGCA
AAATGTCCATGTCAAGGTCCACCCCGTTGTTGTCTTCGGCATCCTCGACC
ACTACAATCGTCGCCCTGAACCAGGGCCTGTCCGCGTTATCGGTACGCTG
CTCGGAACGGTGGTGGGAAATGTGGTGGAGATTCACAATGCTTTTGGGGT
GCCGCATGCAGAGAAGGAAAATGAGGTTGCTTTGGGGCAGGACTATCATC
GCGCGATGTACTCGCATTTCACGCGGATCAACGACAAGGAGCGGATTGTG
GGCTGGTATGCGACTACCTTGGAAGGGGGACGGGCCCTGAATTCTAACAG
CATCATTATCCATGGGTTCTATGCAGGGAATGCTGATCACGGGGCAGGAG
GAGCGAGGCTCGTCCATCTGGTGGTCGACGCCGCGGTAGCTTCAGGCAGG
GTGTCAATCAAAGCGTACGTCAGCACGGCAGTCAATATCAGTGGTGCTCC
TGTCGCGAACATCTTTCATCAGGTGAAGTTAGATGTGGTAAGCACGGCCC
CAGAAAAGGTTTGTTTGGATAGAATGATTCGGGGTCAGGAGAGGGAGAAG
GCATGGATGGCGAGCGAAACAGTGGCCACGGTGCTGCCGGGGGGGGGGCA
GCAGCCGCGAGGGAGGACCTAG
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protein sequence of NO14G02340.1

>NO14G02340.1-protein ID=NO14G02340.1-protein|Name=NO14G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MALQGSTADALFVDNVQNVHVKVHPVVVFGILDHYNRRPEPGPVRVIGTL
LGTVVGNVVEIHNAFGVPHAEKENEVALGQDYHRAMYSHFTRINDKERIV
GWYATTLEGGRALNSNSIIIHGFYAGNADHGAGGARLVHLVVDAAVASGR
VSIKAYVSTAVNISGAPVANIFHQVKLDVVSTAPEKVCLDRMIRGQEREK
AWMASETVATVLPGGGQQPRGRT*
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Synonyms
Publications