NO14G02330, NO14G02330 (gene) Nannochloropsis oceanica

Overview
NameNO14G02330
Unique NameNO14G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length240
Alignment locationchr14:697391..697630 -

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Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit F
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:697391..697630 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR027531eIF3f
IPR024969Rpn11/EIF3F_C
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Homology
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: EWM24586.1 (JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 1.700e-27
Identity = 66/79 (83.54%), Postives = 74/79 (93.67%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLSGLRNK 80
            MLE+V  FVDRVVAG+ E DS +GCE+ADTLSAVPRVRPELFDSIF+GNLQDLLMVSYL+SLTKANLAISEKLSG+R+K
Sbjct:  236 MLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLSGVRHK 314
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: OEU09516.1 (hypothetical protein FRACYDRAFT_271363 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-14
Identity = 40/74 (54.05%), Postives = 60/74 (81.08%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLS 75
            +LE  S +VD V+ G+  PD+ VG ++ADTL+ VPR+RPE+FD +F+ +LQDLLMV+YLS++T+  L+I+EKL+
Sbjct:  196 LLETASDYVDAVIDGKISPDAEVGRKVADTLATVPRIRPEVFDKLFNDSLQDLLMVTYLSNITQTQLSIAEKLN 269
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BLAST of NO14G02330 vs. NCBI_GenBank
Match: XP_002296908.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED86636.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.9 bits (211), Expect = 6.300e-14
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLSGLRNK 80
            MLE  S +VD+VV G    D  VG +I++TL++VPR+RPE+FD +F+ +LQDLLMV+YLS++TK  L I+EKL+    K
Sbjct:  204 MLETCSEYVDKVVDGTISADDQVGRDISETLNSVPRIRPEVFDKMFNDSLQDLLMVTYLSNITKTQLTIAEKLNATLGK 282
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: CBN74067.1 (translation initiation factor eIF3 f subunit [Ectocarpus siliculosus])

HSP 1 Score: 83.6 bits (205), Expect = 3.100e-13
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLS 75
            ML+Q   +V  VV G+   D  +G ++ADTL+A+PR+RPE F+ +F  NLQDLLMVSYLSSLT+  LAI+EKL+
Sbjct:  246 MLQQAEEYVGTVVDGKLPADPHMGRKLADTLAAIPRMRPEAFNRLFDDNLQDLLMVSYLSSLTRTQLAIAEKLA 319
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: EJK73701.1 (hypothetical protein THAOC_04661 [Thalassiosira oceanica])

HSP 1 Score: 83.2 bits (204), Expect = 4.100e-13
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLS 75
            MLE  S +VD+VV G    D  +G +I++ LS++PR+RPE FD +F+ +LQDLLMV+YLS++TK  L I+EKL+
Sbjct:  242 MLETCSEYVDKVVDGSVPADDALGMDISECLSSIPRIRPEAFDKMFNDSLQDLLMVTYLSNITKTQLTIAEKLN 315
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: XP_002178743.1 (COP9 SigNalosome subunit 6, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49441.1 COP9 SigNalosome subunit 6, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 82.4 bits (202), Expect = 6.900e-13
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLS 75
            +LE+   +VD VV G+  PD+  G +IADTL+ V RVRPE+FD +F  +LQDLLMVSYLS++T+  + I++KL+
Sbjct:  202 LLEKTLAYVDSVVDGKTPPDAEAGRQIADTLATVARVRPEVFDRLFHDSLQDLLMVSYLSNITRTQMTIADKLN 275
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: GAX15400.1 (translation initiation factor 3 subunit F [Fistulifera solaris])

HSP 1 Score: 80.9 bits (198), Expect = 2.000e-12
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLS 75
            +LE +S +VD VV G   PD+  G  IAD L+ VPR+RP+  D +F  +LQDLLMV+YLS+LT+  +AI+EKL+
Sbjct:  233 LLETISNYVDAVVEGTTPPDTEKGRHIADALATVPRMRPDAMDKLFHESLQDLLMVTYLSNLTQTQIAIAEKLN 306
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: GBG24096.1 (Eukaryotic translation initiation factor 3 subunit F [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 79.0 bits (193), Expect = 7.600e-12
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLS 75
            MLE VS +VD VVA  + PD   G +IA  +S VPR+ P +F+  F  NLQDLLMV YLS+LT+  LA++E+++
Sbjct:  231 MLENVSAYVDDVVAKRKTPDYKTGSKIASVISMVPRIEPAVFEKSFRSNLQDLLMVVYLSNLTRTQLAVAERIA 304
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: XP_009535841.1 (hypothetical protein PHYSODRAFT_355949 [Phytophthora sojae] >EGZ09208.1 hypothetical protein PHYSODRAFT_355949 [Phytophthora sojae])

HSP 1 Score: 78.6 bits (192), Expect = 1.000e-11
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKL 74
            +++  S FV  VVAG++  D+ +G EIAD L+A+P +R E FD +F+  LQDLLMVSYLS LT+A L+++EKL
Sbjct:  204 VIDGASSFVGDVVAGKQTADAKLGREIADALAAIPMLREEQFDQLFNTGLQDLLMVSYLSGLTQAQLSMAEKL 276
[Close]
BLAST of NO14G02330 vs. NCBI_GenBank
Match: XP_008894564.1 (hypothetical protein PPTG_03631 [Phytophthora parasitica INRA-310] >ETI41036.1 hypothetical protein F443_13678 [Phytophthora parasitica P1569] >ETI41067.1 hypothetical protein F443_13674 [Phytophthora parasitica P1569] >ETK81145.1 hypothetical protein L915_13349 [Phytophthora parasitica] >ETL34558.1 hypothetical protein L916_13230 [Phytophthora parasitica] >ETL87820.1 hypothetical protein L917_13055 [Phytophthora parasitica] >ETM41065.1 hypothetical protein L914_13143 [Phytophthora parasitica] >ETN20689.1 hypothetical protein PPTG_03631 [Phytophthora parasitica INRA-310] >ETO69733.1 hypothetical protein F444_13741 [Phytophthora parasitica P1976] >ETP10832.1 hypothetical protein F441_13607 [Phytophthora parasitica CJ01A1] >ETP38974.1 hypothetical protein F442_13542 [Phytophthora parasitica P10297] >KUG00469.1 Eukaryotic translation initiation factor 3 subunit F-1 [Phytophthora nicotianae])

HSP 1 Score: 78.6 bits (192), Expect = 1.000e-11
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 0 
Query:    2 LEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKL 74
            ++  S FV  VVAG++  DS +G EIAD L+A+P +R E FD +F+  LQDLLMVSYLS LT+A L+++EKL
Sbjct:  205 IDGASSFVGDVVAGKQTADSKLGREIADALAAIPILREEQFDQLFNTGLQDLLMVSYLSGLTQAQLSMAEKL 276
The following BLAST results are available for this feature:
BLAST of NO14G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24586.11.700e-2783.54JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana][more]
OEU09516.11.300e-1454.05hypothetical protein FRACYDRAFT_271363 [Fragilario... [more]
XP_002296908.16.300e-1453.16predicted protein, partial [Thalassiosira pseudona... [more]
CBN74067.13.100e-1356.76translation initiation factor eIF3 f subunit [Ecto... [more]
EJK73701.14.100e-1352.70hypothetical protein THAOC_04661 [Thalassiosira oc... [more]
XP_002178743.16.900e-1352.70COP9 SigNalosome subunit 6, partial [Phaeodactylum... [more]
GAX15400.12.000e-1252.70translation initiation factor 3 subunit F [Fistuli... [more]
GBG24096.17.600e-1251.35Eukaryotic translation initiation factor 3 subunit... [more]
XP_009535841.11.000e-1153.42hypothetical protein PHYSODRAFT_355949 [Phytophtho... [more]
XP_008894564.11.000e-1155.56hypothetical protein PPTG_03631 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002450NSK002450Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02330.1NO14G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555688gene_5813Nannochloropsis oceanica (N. oceanica CCMP1779)gene
EIF3fgene5906Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02330.1NO14G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02330 ID=NO14G02330|Name=NO14G02330|organism=Nannochloropsis oceanica|type=gene|length=240bp
ATGCTGGAGCAGGTGAGTGGATTCGTGGACAGGGTGGTTGCAGGGGAGGA
AGAGCCTGATAGCACGGTGGGGTGTGAGATTGCTGATACGCTGTCAGCGG
TGCCGAGGGTGAGGCCGGAGTTGTTTGATTCCATATTTAGTGGGAATTTG
CAAGATTTGCTGATGGTTAGTTATTTGTCGAGTTTGACCAAGGCGAATCT
GGCGATTTCCGAGAAGCTGAGTGGGTTGCGGAATAAGTAG
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protein sequence of NO14G02330.1

>NO14G02330.1-protein ID=NO14G02330.1-protein|Name=NO14G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNL
QDLLMVSYLSSLTKANLAISEKLSGLRNK*
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Synonyms
Publications