NO14G02330.1, NO14G02330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02330.1
Unique NameNO14G02330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length240
Alignment locationchr14:697391..697630 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:697391..697630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02330.1 vs.
Match: EWM24586.1 (JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 1.700e-27
Identity = 66/79 (83.54%), Postives = 74/79 (93.67%), Query Frame = 0 
Query:    1 MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNLQDLLMVSYLSSLTKANLAISEKLSGLRNK 80
            MLE+V  FVDRVVAG+ E DS +GCE+ADTLSAVPRVRPELFDSIF+GNLQDLLMVSYL+SLTKANLAISEKLSG+R+K
Sbjct:  236 MLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLSGVRHK 314
The following BLAST results are available for this feature:
BLAST of NO14G02330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24586.11.700e-2783.54JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02330NO14G02330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02330.1NO14G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02330.1.cds1NO14G02330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02330.1 ID=NO14G02330.1|Name=NO14G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=240bp
ATGCTGGAGCAGGTGAGTGGATTCGTGGACAGGGTGGTTGCAGGGGAGGA
AGAGCCTGATAGCACGGTGGGGTGTGAGATTGCTGATACGCTGTCAGCGG
TGCCGAGGGTGAGGCCGGAGTTGTTTGATTCCATATTTAGTGGGAATTTG
CAAGATTTGCTGATGGTTAGTTATTTGTCGAGTTTGACCAAGGCGAATCT
GGCGATTTCCGAGAAGCTGAGTGGGTTGCGGAATAAGTAG
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protein sequence of NO14G02330.1

>NO14G02330.1-protein ID=NO14G02330.1-protein|Name=NO14G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MLEQVSGFVDRVVAGEEEPDSTVGCEIADTLSAVPRVRPELFDSIFSGNL
QDLLMVSYLSSLTKANLAISEKLSGLRNK*
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mRNA from alignment at chr14:697391..697630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02330.1 ID=NO14G02330.1|Name=NO14G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=240bp|location=Sequence derived from alignment at chr14:697391..697630- (Nannochloropsis oceanica)
ATGCTGGAGCAGGTGAGTGGATTCGTGGACAGGGTGGTTGCAGGGGAGGA
AGAGCCTGATAGCACGGTGGGGTGTGAGATTGCTGATACGCTGTCAGCGG
TGCCGAGGGTGAGGCCGGAGTTGTTTGATTCCATATTTAGTGGGAATTTG
CAAGATTTGCTGATGGTTAGTTATTTGTCGAGTTTGACCAAGGCGAATCT
GGCGATTTCCGAGAAGCTGAGTGGGTTGCGGAATAAGTAG
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Coding sequence (CDS) from alignment at chr14:697391..697630-

>NO14G02330.1 ID=NO14G02330.1|Name=NO14G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at chr14:697391..697630- (Nannochloropsis oceanica)
ATGCTGGAGCAGGTGAGTGGATTCGTGGACAGGGTGGTTGCAGGGGAGGA
AGAGCCTGATAGCACGGTGGGGTGTGAGATTGCTGATACGCTGTCAGCGG
TGCCGAGGGTGAGGCCGGAGTTGTTTGATTCCATATTTAGTGGGAATTTG
CAAGATTTGCTGATGGTTAGTTATTTGTCGAGTTTGACCAAGGCGAATCT
GGCGATTTCCGAGAAGCTGAGTGGGTTGCGGAATAAGTAG
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Synonyms
Publications