NO14G02300, NO14G02300 (gene) Nannochloropsis oceanica

Overview
NameNO14G02300
Unique NameNO14G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr14:690453..691571 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:690453..691571 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO14G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002446NSK002446Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02300.1NO14G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|37875gene_5810Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02300.1NO14G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02300 ID=NO14G02300|Name=NO14G02300|organism=Nannochloropsis oceanica|type=gene|length=1119bp
ATGTCCGCGTCATCTACTGTCGATATTCGTCTCCCCCCACATTCAAGCAT
CATCACATCCGATGCATTTGTGGACGCGGCATCTAGATGCGTTCCCTCTG
CAGTCCGTGCCTTTCTCGACAATCCCGCCACGGCGGGTCTAATCAATGTG
CTGGACTCGCAAGGCCGGCATGCCGCAGAGGAAGCGGCGCGCGAAGGTCA
TGTATATGTCCTGGAGCTGCTCTTGCAAGGTTGTGACTTGCCCGCACCCT
ACAATGTGCATCAAGCGTTTCACCTTGCTGCCAGTGGGGGGCACGCGGAG
GCTGTCCTATTCCTTCTTGCACAACGAGCCGTCAAGATAGATGTGAACGT
CTTGAACGCCGACCGTCAAAGCGCCCTTCACCTAGCCGCGCAGCGAGGGC
ACCACAAAGTGCTCAAGGTTCTCCTTGACAAGGCAACTCCTGATCCGTAC
GTGCGGGAGGCCACGTTGGGGAAAACTCCTGCTGAGATGGCTGTAGATGC
CGGCGCGGATAACTGCGTGGCATTGCTCAACAAATACGAAACGACGTGGC
GTCGACATGTCTTACAGCTATTGCTTCGGGCAATGACTGGCAAGGAGAAG
GACGAAAGAGGAGTAGCTGGCAAGAAGTGTCGATTGGCTGAGATCCCGTT
TGCTCTAGTTCATTCGCACGTATTGGAGGCGTTGGCCGGGCGAGAAGGAG
GCAGCAAAGAAGGGAGGGATGGCTTTCCAACTTCGATCATGGAGGGGATT
GATATTTATCGCGACAATTTCGAAAGCGATGACGAGAAAGACTTCCCTCA
AGTCTTTACTCAGGAACCTAAGCGACGCAAACTTGGAGGAGGTAGTGGAG
GAGGGGGAGGACGTATGATTCAGCAAGAGGAGGGGGAGGCCGCGGAAGAG
GACACTTATGTGTACAAAGGCATGTTACCCAGCAGCCAGGATAGTAATGA
CTCGTTCGCATCGTCATCGTCGGGAACGGCGAGTAGTGGTGGAGACAGAC
TCGTCTCCACTCGCGGTAGAGGAGAAGGTGGGGGGGGACGGGCGTCGCGT
AAAAGCTGGGTGGCGATGAAGGAGAGGCCGTTACCATCATGCAGCTTCTA
TGGGGAGCCGATTGAGTGA
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protein sequence of NO14G02300.1

>NO14G02300.1-protein ID=NO14G02300.1-protein|Name=NO14G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MSASSTVDIRLPPHSSIITSDAFVDAASRCVPSAVRAFLDNPATAGLINV
LDSQGRHAAEEAAREGHVYVLELLLQGCDLPAPYNVHQAFHLAASGGHAE
AVLFLLAQRAVKIDVNVLNADRQSALHLAAQRGHHKVLKVLLDKATPDPY
VREATLGKTPAEMAVDAGADNCVALLNKYETTWRRHVLQLLLRAMTGKEK
DERGVAGKKCRLAEIPFALVHSHVLEALAGREGGSKEGRDGFPTSIMEGI
DIYRDNFESDDEKDFPQVFTQEPKRRKLGGGSGGGGGRMIQQEEGEAAEE
DTYVYKGMLPSSQDSNDSFASSSSGTASSGGDRLVSTRGRGEGGGGRASR
KSWVAMKERPLPSCSFYGEPIE*
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Synonyms
Publications