NO14G02300.1, NO14G02300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02300.1
Unique NameNO14G02300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr14:690453..691571 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:690453..691571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02300.1 vs.
Match: 5HRY_A (Chain A, Computationally Designed Cyclic Dimer Ank3c2_1; 5HRY_B Chain B, Computationally Designed Cyclic Dimer Ank3c2_1; 5HRY_C Chain C, Computationally Designed Cyclic Dimer Ank3c2_1; 5HRY_D Chain D, Computationally Designed Cyclic Dimer Ank3c2_1; 5HRY_E Chain E, Computationally Designed Cyclic Dimer Ank3c2_1; 5HRY_F Chain F, Computationally Designed Cyclic Dimer Ank3c2_1; 5HRY_G Chain G, Computationally Designed Cyclic Dimer Ank3c2_1; 5HRY_H Chain H, Computationally Designed Cyclic Dimer Ank3c2_1)

HSP 1 Score: 70.1 bits (170), Expect = 1.700e-8
Identity = 57/165 (34.55%), Postives = 83/165 (50.30%), Query Frame = 0 
Query:   24 VDAASRCVPSAVRAFLDNPATAGLINVLDSQGRHAAEEAAREGHVYVLELLL-QGCDLPAPYNVHQA-FHLAASGGHAEAVLFLLAQRAVKIDVNVLNADRQSALHLAAQRGHHKVLKVLLDKATPDPYVREATLGKTPAEMAVDAGADNCVALLNKYETTWRRH 187
            ++AA       V+  L+N A    +N  DS G+     AA  GH  V+ LLL QG D  A  +  +   HLAA  GHA  V  LL   A   D N  ++D ++ LHLAA+ GH +V+ +LL     DP   ++  G+TP ++A + G +  V +L  +   W  H
Sbjct:    9 IEAAENGNKDRVKDLLENGAD---VNASDSDGKTPLHLAAENGHAKVVLLLLEQGADPNAKDSDGKTPLHLAAENGHAVVVALLLMHGA---DPNAKDSDGKTPLHLAAENGHEEVVILLLAMGA-DPNTSDSD-GRTPLDLAREHGNEEVVKVLEDH-GGWLEH 164
The following BLAST results are available for this feature:
BLAST of NO14G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
5HRY_A1.700e-834.55Chain A, Computationally Designed Cyclic Dimer Ank... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02300NO14G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02300.1NO14G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02300.1.cds1NO14G02300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02300.1 ID=NO14G02300.1|Name=NO14G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp
ATGTCCGCGTCATCTACTGTCGATATTCGTCTCCCCCCACATTCAAGCAT
CATCACATCCGATGCATTTGTGGACGCGGCATCTAGATGCGTTCCCTCTG
CAGTCCGTGCCTTTCTCGACAATCCCGCCACGGCGGGTCTAATCAATGTG
CTGGACTCGCAAGGCCGGCATGCCGCAGAGGAAGCGGCGCGCGAAGGTCA
TGTATATGTCCTGGAGCTGCTCTTGCAAGGTTGTGACTTGCCCGCACCCT
ACAATGTGCATCAAGCGTTTCACCTTGCTGCCAGTGGGGGGCACGCGGAG
GCTGTCCTATTCCTTCTTGCACAACGAGCCGTCAAGATAGATGTGAACGT
CTTGAACGCCGACCGTCAAAGCGCCCTTCACCTAGCCGCGCAGCGAGGGC
ACCACAAAGTGCTCAAGGTTCTCCTTGACAAGGCAACTCCTGATCCGTAC
GTGCGGGAGGCCACGTTGGGGAAAACTCCTGCTGAGATGGCTGTAGATGC
CGGCGCGGATAACTGCGTGGCATTGCTCAACAAATACGAAACGACGTGGC
GTCGACATGTCTTACAGCTATTGCTTCGGGCAATGACTGGCAAGGAGAAG
GACGAAAGAGGAGTAGCTGGCAAGAAGTGTCGATTGGCTGAGATCCCGTT
TGCTCTAGTTCATTCGCACGTATTGGAGGCGTTGGCCGGGCGAGAAGGAG
GCAGCAAAGAAGGGAGGGATGGCTTTCCAACTTCGATCATGGAGGGGATT
GATATTTATCGCGACAATTTCGAAAGCGATGACGAGAAAGACTTCCCTCA
AGTCTTTACTCAGGAACCTAAGCGACGCAAACTTGGAGGAGGTAGTGGAG
GAGGGGGAGGACGTATGATTCAGCAAGAGGAGGGGGAGGCCGCGGAAGAG
GACACTTATGTGTACAAAGGCATGTTACCCAGCAGCCAGGATAGTAATGA
CTCGTTCGCATCGTCATCGTCGGGAACGGCGAGTAGTGGTGGAGACAGAC
TCGTCTCCACTCGCGGTAGAGGAGAAGGTGGGGGGGGACGGGCGTCGCGT
AAAAGCTGGGTGGCGATGAAGGAGAGGCCGTTACCATCATGCAGCTTCTA
TGGGGAGCCGATTGAGTGA
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protein sequence of NO14G02300.1

>NO14G02300.1-protein ID=NO14G02300.1-protein|Name=NO14G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MSASSTVDIRLPPHSSIITSDAFVDAASRCVPSAVRAFLDNPATAGLINV
LDSQGRHAAEEAAREGHVYVLELLLQGCDLPAPYNVHQAFHLAASGGHAE
AVLFLLAQRAVKIDVNVLNADRQSALHLAAQRGHHKVLKVLLDKATPDPY
VREATLGKTPAEMAVDAGADNCVALLNKYETTWRRHVLQLLLRAMTGKEK
DERGVAGKKCRLAEIPFALVHSHVLEALAGREGGSKEGRDGFPTSIMEGI
DIYRDNFESDDEKDFPQVFTQEPKRRKLGGGSGGGGGRMIQQEEGEAAEE
DTYVYKGMLPSSQDSNDSFASSSSGTASSGGDRLVSTRGRGEGGGGRASR
KSWVAMKERPLPSCSFYGEPIE*
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mRNA from alignment at chr14:690453..691571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02300.1 ID=NO14G02300.1|Name=NO14G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp|location=Sequence derived from alignment at chr14:690453..691571- (Nannochloropsis oceanica)
ATGTCCGCGTCATCTACTGTCGATATTCGTCTCCCCCCACATTCAAGCAT
CATCACATCCGATGCATTTGTGGACGCGGCATCTAGATGCGTTCCCTCTG
CAGTCCGTGCCTTTCTCGACAATCCCGCCACGGCGGGTCTAATCAATGTG
CTGGACTCGCAAGGCCGGCATGCCGCAGAGGAAGCGGCGCGCGAAGGTCA
TGTATATGTCCTGGAGCTGCTCTTGCAAGGTTGTGACTTGCCCGCACCCT
ACAATGTGCATCAAGCGTTTCACCTTGCTGCCAGTGGGGGGCACGCGGAG
GCTGTCCTATTCCTTCTTGCACAACGAGCCGTCAAGATAGATGTGAACGT
CTTGAACGCCGACCGTCAAAGCGCCCTTCACCTAGCCGCGCAGCGAGGGC
ACCACAAAGTGCTCAAGGTTCTCCTTGACAAGGCAACTCCTGATCCGTAC
GTGCGGGAGGCCACGTTGGGGAAAACTCCTGCTGAGATGGCTGTAGATGC
CGGCGCGGATAACTGCGTGGCATTGCTCAACAAATACGAAACGACGTGGC
GTCGACATGTCTTACAGCTATTGCTTCGGGCAATGACTGGCAAGGAGAAG
GACGAAAGAGGAGTAGCTGGCAAGAAGTGTCGATTGGCTGAGATCCCGTT
TGCTCTAGTTCATTCGCACGTATTGGAGGCGTTGGCCGGGCGAGAAGGAG
GCAGCAAAGAAGGGAGGGATGGCTTTCCAACTTCGATCATGGAGGGGATT
GATATTTATCGCGACAATTTCGAAAGCGATGACGAGAAAGACTTCCCTCA
AGTCTTTACTCAGGAACCTAAGCGACGCAAACTTGGAGGAGGTAGTGGAG
GAGGGGGAGGACGTATGATTCAGCAAGAGGAGGGGGAGGCCGCGGAAGAG
GACACTTATGTGTACAAAGGCATGTTACCCAGCAGCCAGGATAGTAATGA
CTCGTTCGCATCGTCATCGTCGGGAACGGCGAGTAGTGGTGGAGACAGAC
TCGTCTCCACTCGCGGTAGAGGAGAAGGTGGGGGGGGACGGGCGTCGCGT
AAAAGCTGGGTGGCGATGAAGGAGAGGCCGTTACCATCATGCAGCTTCTA
TGGGGAGCCGATTGAGTGA
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Coding sequence (CDS) from alignment at chr14:690453..691571-

>NO14G02300.1 ID=NO14G02300.1|Name=NO14G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr14:690453..691571- (Nannochloropsis oceanica)
ATGTCCGCGTCATCTACTGTCGATATTCGTCTCCCCCCACATTCAAGCAT
CATCACATCCGATGCATTTGTGGACGCGGCATCTAGATGCGTTCCCTCTG
CAGTCCGTGCCTTTCTCGACAATCCCGCCACGGCGGGTCTAATCAATGTG
CTGGACTCGCAAGGCCGGCATGCCGCAGAGGAAGCGGCGCGCGAAGGTCA
TGTATATGTCCTGGAGCTGCTCTTGCAAGGTTGTGACTTGCCCGCACCCT
ACAATGTGCATCAAGCGTTTCACCTTGCTGCCAGTGGGGGGCACGCGGAG
GCTGTCCTATTCCTTCTTGCACAACGAGCCGTCAAGATAGATGTGAACGT
CTTGAACGCCGACCGTCAAAGCGCCCTTCACCTAGCCGCGCAGCGAGGGC
ACCACAAAGTGCTCAAGGTTCTCCTTGACAAGGCAACTCCTGATCCGTAC
GTGCGGGAGGCCACGTTGGGGAAAACTCCTGCTGAGATGGCTGTAGATGC
CGGCGCGGATAACTGCGTGGCATTGCTCAACAAATACGAAACGACGTGGC
GTCGACATGTCTTACAGCTATTGCTTCGGGCAATGACTGGCAAGGAGAAG
GACGAAAGAGGAGTAGCTGGCAAGAAGTGTCGATTGGCTGAGATCCCGTT
TGCTCTAGTTCATTCGCACGTATTGGAGGCGTTGGCCGGGCGAGAAGGAG
GCAGCAAAGAAGGGAGGGATGGCTTTCCAACTTCGATCATGGAGGGGATT
GATATTTATCGCGACAATTTCGAAAGCGATGACGAGAAAGACTTCCCTCA
AGTCTTTACTCAGGAACCTAAGCGACGCAAACTTGGAGGAGGTAGTGGAG
GAGGGGGAGGACGTATGATTCAGCAAGAGGAGGGGGAGGCCGCGGAAGAG
GACACTTATGTGTACAAAGGCATGTTACCCAGCAGCCAGGATAGTAATGA
CTCGTTCGCATCGTCATCGTCGGGAACGGCGAGTAGTGGTGGAGACAGAC
TCGTCTCCACTCGCGGTAGAGGAGAAGGTGGGGGGGGACGGGCGTCGCGT
AAAAGCTGGGTGGCGATGAAGGAGAGGCCGTTACCATCATGCAGCTTCTA
TGGGGAGCCGATTGAGTGA
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Synonyms
Publications