NO14G02230, NO14G02230 (gene) Nannochloropsis oceanica

Overview
NameNO14G02230
Unique NameNO14G02230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1819
Alignment locationchr14:670346..672164 -

Link to JBrowse

Properties
Property NameValue
DescriptionHelix-loop-helix DNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:670346..672164 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
Homology
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BLAST of NO14G02230 vs. NCBI_GenBank
Match: EWM24601.1 (Helix-loop-helix DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 1.700e-34
Identity = 173/491 (35.23%), Postives = 206/491 (41.96%), Query Frame = 0 
Query:    1 MSDIEELVQLLGQPGEDLDWGGEHFCFLEYEHEQAVVANQQLHHPQQDI---HQPPHILASADCSSGNKRRMSEAFQCQAYPSHSSGPVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRMEXXXXXXXXXXXEVNDKLNELMEVLVEADSKGQTPAEKQQ----QQAQAASIDKGNFRVDVLSRAVRVIKRLNEEVKAGQAEVERLRAQLEQTFLQPK------------REXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMTWVTVPMWMPSGPNVAHGDHAAAMAQAKGIMLDANNGGYCGANGATPFPYATMPFFVPQHAQGHIQNGGMVGMPSMMMPAGGGGLVEMGFGGDDEGGVGAGQTTSFAGLEVWGEEAPTHAP 473
            MSDIEEL QLLGQP EDLDWGGE FCFLE +H   V     L H    +   H   H+++  +CSSGNKRRM+EA Q  +YPS + GPVL                                                                                                 XXXXXXXXXXXXXXXX    XXXXXXXXXXX      NELME L E +++ QTP E+QQ    QQ QA + DKGNFRVDVLSRAV++IKRL+ E+KA   EV RLRAQ+EQ     K             E                                                   +TWV VP+WMPSG +  H +  AA+A  KG+MLD     +    G   FP+A MPF +P H  G +         S ++P   G      F G D    G   T  F G+    +EAPTHAP
Sbjct:    1 MSDIEELAQLLGQPLEDLDWGGEPFCFLENDHPDHV----HLTHSGGVLPPPHVSSHVMSVPNCSSGNKRRMTEALQVNSYPSKTCGPVL-----VPAPAPSSLPIILNSSSNEDNGNLNRRMGGRSIRTTSRQRMSSAVEEECRSYPTGPGSHSHVTSPTPSSSTFRDDMEHDQFDSSSSTGDASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNELMEALAEVETEDQTPLEQQQQKKLQQVQAGNADKGNFRVDVLSRAVKLIKRLHAELKAEHTEVGRLRAQMEQMCAPAKEEEGVDKEWSGHEERQACHPLSGALSGREGENGVMPTVSSQTDCALASKTLNHAWDAPGNKGGPPVTWVRVPLWMPSGGHSEHTERQAAIAHMKGMMLD-----HQVLPGGNAFPFAAMPFLMPSHNDGDM---------SAVVPGNPG-----SFAGGDGSLTGQASTAGFEGV----DEAPTHAP 459
The following BLAST results are available for this feature:
BLAST of NO14G02230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24601.11.700e-3435.23Helix-loop-helix DNA-binding protein [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002439NSK002439Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02230.1NO14G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590354gene_5801Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100062g23gene5898Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02230.1NO14G02230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02230 ID=NO14G02230|Name=NO14G02230|organism=Nannochloropsis oceanica|type=gene|length=1819bp
ATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGA
CTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGAGCACGAGC
AAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAGACATCCAC
CAACCACCACACATACTgtacgttgatagaggacagccatccgctcgccc
ctcccctccgcccctcccccttttcccacccacccacccaagattccttt
gtcaaccttattcaccgtatcgcccccctccttctcgcttcactgatttg
cagGGCCTCGGCAGACTGCTCGTCGGGTAACAAGAGgtaagtagaaggaa
gagaagagcgagaagggatagatggctgcttgaaaggatgagggttgatg
accaattacttgacagatgccatgagggagttggcgagagaacccgtagg
ggacagaagctgtgctgtgtgtcgtggttgcgttgcacggccagcataca
cgaaattcctgccctccctccacacacaacaattactcgcctgctctttt
ttccaatttccacccacccacccttcaccactctcactacacagGCGTAT
GTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCGGTCCTG
TCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTCAACAAC
AGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAGCAGCAA
CAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACGCGCAGC
TTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTCTTAGCG
GTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTCATACTG
CTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGAGCAATG
GGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCACAAAGA
ATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGTAAATGA
TAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCAAGGGGC
AGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGTATTGAC
AAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGTTATCAA
GAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGCGTCTGC
GGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTGCAGCCC
CAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGCCGATTC
TTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCTCGAGCA
GCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCCATGACG
TGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGCGCATGG
AGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTGATGCGA
ATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCATATGCT
ACAATGCCTTTCTTTGTCCCTCAGCACGCGCAGGGGCATATTCAGAATGG
AGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTGGTGGGT
TAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGAGCAGGA
CAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGCGCCGAC
ACATGCGCCATGCGCATGA
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protein sequence of NO14G02230.1

>NO14G02230.1-protein ID=NO14G02230.1-protein|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MSDIEELVQLLGQPGEDLDWGGEHFCFLEYEHEQAVVANQQLHHPQQDIH
QPPHILASADCSSGNKRRMSEAFQCQAYPSHSSGPVLVPAPAPACLPIIL
NNSNSNSSNSSSNSSVSSNSTATGRSSSRSSRHAQLLSVKSKEDDDSVSF
LAVAESSKASTPTSSSSYCFSEEAEQEQERQEQSNGKAAAAVGVRTEAVA
QRMERKKTREKMRRQEVNDKLNELMEVLVEADSKGQTPAEKQQQQAQAAS
IDKGNFRVDVLSRAVRVIKRLNEEVKAGQAEVERLRAQLEQTFLQPKREL
QPQEQQQQSHQQETAVADSSSAERHSRPCNTSTSSSKNSSNSSSTKLNQS
MTWVTVPMWMPSGPNVAHGDHAAAMAQAKGIMLDANNGGYCGANGATPFP
YATMPFFVPQHAQGHIQNGGMVGMPSMMMPAGGGGLVEMGFGGDDEGGVG
AGQTTSFAGLEVWGEEAPTHAPCA*
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Synonyms
Publications