NO14G02230.1, NO14G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02230.1
Unique NameNO14G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr14:670346..672164 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:670346..672164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G02230.1 vs.
Match: EWM24601.1 (Helix-loop-helix DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 265.8 bits (678), Expect = 2.600e-67
Identity = 219/498 (43.98%), Postives = 277/498 (55.62%), Query Frame = 0 
Query:    1 MSDIEELVQLLGQPGEDLDWGGEHFCFLEYEHEQAVVANQQLHHPQQDI---HQPPHILASADCSSGNKRRMSEAFQCQAYPSHSSGPVLVPAPAPACLPIILNNSNSNSSNSSSNSSVSSNSTATGRSSSRSSRHAQLLSVKSKEDDDSVSFLAVAESSKASTPTSSSSYCFSEEAEQEQERQEQSNGKAAAAVGV------RTEAVAQRMERKKTREKMRRQEVNDKLNELMEVLVEADSKGQTPAEKQQQ----QAQAASIDKGNFRVDVLSRAVRVIKRLNEEVKAGQAEVERLRAQLEQTFLQPKRELQPQEQQQQSHQQETAVADSSSA--ERHSRPCNTSTSSSKNSSNSSSTKLNQS-----------MTWVTVPMWMPSGPNVAHGDHAAAMAQAKGIMLDANNGGYCGANGATPFPYATMPFFVPQHAQGHIQNGGMVGMPSMMMPAGGGGLVEMGFGGDDEGGVGAGQTTSFAGLEVWGEEAPTHAP 473
            MSDIEEL QLLGQP EDLDWGGE FCFLE +H   V     L H    +   H   H+++  +CSSGNKRRM+EA Q  +YPS + GPVLVPAPAP+ LPIILN+S SN  N + N  +       GRS   +SR  Q +S   +E+  S         S  ++PT SSS  F ++ E +Q     S G A+           RT+AVAQRMERKKTREKMRR EVNDK NELME L E +++ QTP E+QQQ    Q QA + DKGNFRVDVLSRAV++IKRL+ E+KA   EV RLRAQ+EQ    P +E +  +++   H++  A    S A   R        T SS+     +S  LN +           +TWV VP+WMPSG +  H +  AA+A  KG+MLD     +    G   FP+A MPF +P H  G +         S ++P   G      F G D    G   T  F G+    +EAPTHAP
Sbjct:    1 MSDIEELAQLLGQPLEDLDWGGEPFCFLENDHPDHV----HLTHSGGVLPPPHVSSHVMSVPNCSSGNKRRMTEALQVNSYPSKTCGPVLVPAPAPSSLPIILNSS-SNEDNGNLNRRMG------GRSIRTTSR--QRMSSAVEEECRSYP-TGPGSHSHVTSPTPSSS-TFRDDMEHDQFDSSSSTGDASVTASAGQATTSRTQAVAQRMERKKTREKMRRLEVNDKFNELMEALAEVETEDQTPLEQQQQKKLQQVQAGNADKGNFRVDVLSRAVKLIKRLHAELKAEHTEVGRLRAQMEQ-MCAPAKEEEGVDKEWSGHEERQACHPLSGALSGREGENGVMPTVSSQTDCALASKTLNHAWDAPGNKGGPPVTWVRVPLWMPSGGHSEHTERQAAIAHMKGMMLD-----HQVLPGGNAFPFAAMPFLMPSHNDGDM---------SAVVPGNPG-----SFAGGDGSLTGQASTAGFEGV----DEAPTHAP 459
The following BLAST results are available for this feature:
BLAST of NO14G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24601.12.600e-6743.98Helix-loop-helix DNA-binding protein [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02230NO14G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02230.1NO14G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02230.1.cds1NO14G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02230.1.cds2NO14G02230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02230.1.cds3NO14G02230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02230.1 ID=NO14G02230.1|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp
ATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGA
CTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGAGCACGAGC
AAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAGACATCCAC
CAACCACCACACATACTGGCCTCGGCAGACTGCTCGTCGGGTAACAAGAG
GCGTATGTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCG
GTCCTGTCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTC
AACAACAGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAG
CAGCAACAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACG
CGCAGCTTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTC
TTAGCGGTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTC
ATACTGCTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGA
GCAATGGGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCA
CAAAGAATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGT
AAATGATAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCA
AGGGGCAGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGT
ATTGACAAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGT
TATCAAGAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGC
GTCTGCGGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTG
CAGCCCCAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGC
CGATTCTTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCT
CGAGCAGCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCC
ATGACGTGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGC
GCATGGAGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTG
ATGCGAATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCA
TATGCTACAATGCCTTTCTTTGTCCCTCAGCACGCGCAGGGGCATATTCA
GAATGGAGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTG
GTGGGTTAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGA
GCAGGACAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGC
GCCGACACATGCGCCATGCGCATGA
back to top

protein sequence of NO14G02230.1

>NO14G02230.1-protein ID=NO14G02230.1-protein|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MSDIEELVQLLGQPGEDLDWGGEHFCFLEYEHEQAVVANQQLHHPQQDIH
QPPHILASADCSSGNKRRMSEAFQCQAYPSHSSGPVLVPAPAPACLPIIL
NNSNSNSSNSSSNSSVSSNSTATGRSSSRSSRHAQLLSVKSKEDDDSVSF
LAVAESSKASTPTSSSSYCFSEEAEQEQERQEQSNGKAAAAVGVRTEAVA
QRMERKKTREKMRRQEVNDKLNELMEVLVEADSKGQTPAEKQQQQAQAAS
IDKGNFRVDVLSRAVRVIKRLNEEVKAGQAEVERLRAQLEQTFLQPKREL
QPQEQQQQSHQQETAVADSSSAERHSRPCNTSTSSSKNSSNSSSTKLNQS
MTWVTVPMWMPSGPNVAHGDHAAAMAQAKGIMLDANNGGYCGANGATPFP
YATMPFFVPQHAQGHIQNGGMVGMPSMMMPAGGGGLVEMGFGGDDEGGVG
AGQTTSFAGLEVWGEEAPTHAPCA*
back to top

mRNA from alignment at chr14:670346..672164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02230.1 ID=NO14G02230.1|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at chr14:670346..672164- (Nannochloropsis oceanica)
ATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGA
CTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGAGCACGAGC
AAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAGACATCCAC
CAACCACCACACATACTGTACGTTGATAGAGGACAGCCATCCGCTCGCCC
CTCCCCTCCGCCCCTCCCCCTTTTCCCACCCACCCACCCAAGATTCCTTT
GTCAACCTTATTCACCGTATCGCCCCCCTCCTTCTCGCTTCACTGATTTG
CAGGGCCTCGGCAGACTGCTCGTCGGGTAACAAGAGGTAAGTAGAAGGAA
GAGAAGAGCGAGAAGGGATAGATGGCTGCTTGAAAGGATGAGGGTTGATG
ACCAATTACTTGACAGATGCCATGAGGGAGTTGGCGAGAGAACCCGTAGG
GGACAGAAGCTGTGCTGTGTGTCGTGGTTGCGTTGCACGGCCAGCATACA
CGAAATTCCTGCCCTCCCTCCACACACAACAATTACTCGCCTGCTCTTTT
TTCCAATTTCCACCCACCCACCCTTCACCACTCTCACTACACAGGCGTAT
GTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCGGTCCTG
TCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTCAACAAC
AGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAGCAGCAA
CAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACGCGCAGC
TTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTCTTAGCG
GTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTCATACTG
CTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGAGCAATG
GGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCACAAAGA
ATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGTAAATGA
TAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCAAGGGGC
AGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGTATTGAC
AAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGTTATCAA
GAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGCGTCTGC
GGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTGCAGCCC
CAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGCCGATTC
TTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCTCGAGCA
GCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCCATGACG
TGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGCGCATGG
AGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTGATGCGA
ATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCATATGCT
ACAATGCCTTTCTTTGTCCCTCAGCACGCGCAGGGGCATATTCAGAATGG
AGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTGGTGGGT
TAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGAGCAGGA
CAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGCGCCGAC
ACATGCGCCATGCGCATGA
back to top

Coding sequence (CDS) from alignment at chr14:670346..672164-

>NO14G02230.1 ID=NO14G02230.1|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr14:670346..672164- (Nannochloropsis oceanica)
ATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGA
CTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGAGCACGAGC
AAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAGACATCCAC
CAACCACCACACATACTGGCCTCGGCAGACTGCTCGTCGGGTAACAAGAG
GCGTATGTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCG
GTCCTGTCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTC
AACAACAGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAG
CAGCAACAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACG
CGCAGCTTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTC
TTAGCGGTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTC
ATACTGCTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGA
GCAATGGGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCA
CAAAGAATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGT
AAATGATAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCA
AGGGGCAGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGT
ATTGACAAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGT
TATCAAGAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGC
GTCTGCGGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTG
CAGCCCCAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGC
CGATTCTTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCT
CGAGCAGCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCC
ATGACGTGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGC
GCATGGAGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTG
ATGCGAATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCA
TATGCTACAATGCCTTTCTTTGTCCCTCAGCACGCGCAGGGGCATATTCA
GAATGGAGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTG
GTGGGTTAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGA
GCAGGACAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGC
GCCGACACATGCGCCATGCGCATGA
back to top
Synonyms
Publications