Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr14 genome chr14:670346..672164 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G02230.1 vs.
Match: EWM24601.1 (Helix-loop-helix DNA-binding protein [Nannochloropsis gaditana])
HSP 1 Score: 265.8 bits (678), Expect = 2.600e-67
Identity = 219/498 (43.98%), Postives = 277/498 (55.62%), Query Frame = 0
Query: 1 MSDIEELVQLLGQPGEDLDWGGEHFCFLEYEHEQAVVANQQLHHPQQDI---HQPPHILASADCSSGNKRRMSEAFQCQAYPSHSSGPVLVPAPAPACLPIILNNSNSNSSNSSSNSSVSSNSTATGRSSSRSSRHAQLLSVKSKEDDDSVSFLAVAESSKASTPTSSSSYCFSEEAEQEQERQEQSNGKAAAAVGV------RTEAVAQRMERKKTREKMRRQEVNDKLNELMEVLVEADSKGQTPAEKQQQ----QAQAASIDKGNFRVDVLSRAVRVIKRLNEEVKAGQAEVERLRAQLEQTFLQPKRELQPQEQQQQSHQQETAVADSSSA--ERHSRPCNTSTSSSKNSSNSSSTKLNQS-----------MTWVTVPMWMPSGPNVAHGDHAAAMAQAKGIMLDANNGGYCGANGATPFPYATMPFFVPQHAQGHIQNGGMVGMPSMMMPAGGGGLVEMGFGGDDEGGVGAGQTTSFAGLEVWGEEAPTHAP 473
MSDIEEL QLLGQP EDLDWGGE FCFLE +H V L H + H H+++ +CSSGNKRRM+EA Q +YPS + GPVLVPAPAP+ LPIILN+S SN N + N + GRS +SR Q +S +E+ S S ++PT SSS F ++ E +Q S G A+ RT+AVAQRMERKKTREKMRR EVNDK NELME L E +++ QTP E+QQQ Q QA + DKGNFRVDVLSRAV++IKRL+ E+KA EV RLRAQ+EQ P +E + +++ H++ A S A R T SS+ +S LN + +TWV VP+WMPSG + H + AA+A KG+MLD + G FP+A MPF +P H G + S ++P G F G D G T F G+ +EAPTHAP
Sbjct: 1 MSDIEELAQLLGQPLEDLDWGGEPFCFLENDHPDHV----HLTHSGGVLPPPHVSSHVMSVPNCSSGNKRRMTEALQVNSYPSKTCGPVLVPAPAPSSLPIILNSS-SNEDNGNLNRRMG------GRSIRTTSR--QRMSSAVEEECRSYP-TGPGSHSHVTSPTPSSS-TFRDDMEHDQFDSSSSTGDASVTASAGQATTSRTQAVAQRMERKKTREKMRRLEVNDKFNELMEALAEVETEDQTPLEQQQQKKLQQVQAGNADKGNFRVDVLSRAVKLIKRLHAELKAEHTEVGRLRAQMEQ-MCAPAKEEEGVDKEWSGHEERQACHPLSGALSGREGENGVMPTVSSQTDCALASKTLNHAWDAPGNKGGPPVTWVRVPLWMPSGGHSEHTERQAAIAHMKGMMLD-----HQVLPGGNAFPFAAMPFLMPSHNDGDM---------SAVVPGNPG-----SFAGGDGSLTGQASTAGFEGV----DEAPTHAP 459
The following BLAST results are available for this feature:
BLAST of NO14G02230.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 Expect = 2.60e-67 / Id = 43.98 Sequence EWM24601.1
Match Name E-value Identity Description
EWM24601.1 2.600e-67 43.98 Helix-loop-helix DNA-binding protein [Nannochlorop... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO14G02230.1 ID=NO14G02230.1|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp ATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGA CTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGAGCACGAGC AAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAGACATCCAC CAACCACCACACATACTGGCCTCGGCAGACTGCTCGTCGGGTAACAAGAG GCGTATGTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCG GTCCTGTCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTC AACAACAGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAG CAGCAACAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACG CGCAGCTTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTC TTAGCGGTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTC ATACTGCTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGA GCAATGGGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCA CAAAGAATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGT AAATGATAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCA AGGGGCAGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGT ATTGACAAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGT TATCAAGAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGC GTCTGCGGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTG CAGCCCCAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGC CGATTCTTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCT CGAGCAGCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCC ATGACGTGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGC GCATGGAGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTG ATGCGAATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCA TATGCTACAATGCCTTTCTTTGTCCCTCAGCACGCGCAGGGGCATATTCA GAATGGAGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTG GTGGGTTAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGA GCAGGACAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGC GCCGACACATGCGCCATGCGCATGA back to top protein sequence of NO14G02230.1
>NO14G02230.1-protein ID=NO14G02230.1-protein|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp MSDIEELVQLLGQPGEDLDWGGEHFCFLEYEHEQAVVANQQLHHPQQDIH QPPHILASADCSSGNKRRMSEAFQCQAYPSHSSGPVLVPAPAPACLPIIL NNSNSNSSNSSSNSSVSSNSTATGRSSSRSSRHAQLLSVKSKEDDDSVSF LAVAESSKASTPTSSSSYCFSEEAEQEQERQEQSNGKAAAAVGVRTEAVA QRMERKKTREKMRRQEVNDKLNELMEVLVEADSKGQTPAEKQQQQAQAAS IDKGNFRVDVLSRAVRVIKRLNEEVKAGQAEVERLRAQLEQTFLQPKREL QPQEQQQQSHQQETAVADSSSAERHSRPCNTSTSSSKNSSNSSSTKLNQS MTWVTVPMWMPSGPNVAHGDHAAAMAQAKGIMLDANNGGYCGANGATPFP YATMPFFVPQHAQGHIQNGGMVGMPSMMMPAGGGGLVEMGFGGDDEGGVG AGQTTSFAGLEVWGEEAPTHAPCA* back to top mRNA from alignment at chr14:670346..672164-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02230.1 ID=NO14G02230.1|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp|location=Sequence derived from alignment at chr14:670346..672164- (Nannochloropsis oceanica)ATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGA
CTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGAGCACGAGC
AAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAGACATCCAC
CAACCACCACACATACT GTACGTTGATAGAGGACAGCCATCCGCTCGCCC
CTCCCCTCCGCCCCTCCCCCTTTTCCCACCCACCCACCCAAGATTCCTTT
GTCAACCTTATTCACCGTATCGCCCCCCTCCTTCTCGCTTCACTGATTTG
CAGGGCCTCGGCAGACTGCTCGTCGGGTAACAAGAG GTAAGTAGAAGGAA
GAGAAGAGCGAGAAGGGATAGATGGCTGCTTGAAAGGATGAGGGTTGATG
ACCAATTACTTGACAGATGCCATGAGGGAGTTGGCGAGAGAACCCGTAGG
GGACAGAAGCTGTGCTGTGTGTCGTGGTTGCGTTGCACGGCCAGCATACA
CGAAATTCCTGCCCTCCCTCCACACACAACAATTACTCGCCTGCTCTTTT
TTCCAATTTCCACCCACCCACCCTTCACCACTCTCACTACACAGGCGTAT
GTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCGGTCCTG
TCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTCAACAAC
AGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAGCAGCAA
CAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACGCGCAGC
TTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTCTTAGCG
GTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTCATACTG
CTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGAGCAATG
GGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCACAAAGA
ATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGTAAATGA
TAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCAAGGGGC
AGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGTATTGAC
AAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGTTATCAA
GAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGCGTCTGC
GGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTGCAGCCC
CAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGCCGATTC
TTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCTCGAGCA
GCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCCATGACG
TGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGCGCATGG
AGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTGATGCGA
ATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCATATGCT
ACAATGCCTTTCTTTGTCCCTCAGCACGCGCAGGGGCATATTCAGAATGG
AGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTGGTGGGT
TAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGAGCAGGA
CAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGCGCCGAC
ACATGCGCCATGCGCATGA back to top Coding sequence (CDS) from alignment at chr14:670346..672164-
>NO14G02230.1 ID=NO14G02230.1|Name=NO14G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr14:670346..672164- (Nannochloropsis oceanica) ATGTCTGACATTGAGGAATTGGTGCAGCTGCTAGGGCAACCAGGGGAGGA CTTGGATTGGGGAGGAGAGCACTTCTGTTTCCTCGAGTATGAGCACGAGC AAGCCGTCGTGGCCAACCAACAACTCCACCATCCGCAACAAGACATCCAC CAACCACCACACATACTGGCCTCGGCAGACTGCTCGTCGGGTAACAAGAG GCGTATGTCGGAGGCTTTTCAATGCCAAGCCTACCCCTCACACTCCTCCG GTCCTGTCCTCGTCCCTGCCCCCGCTCCCGCCTGCCTGCCCATCATCCTC AACAACAGTAACAGCAACAGTAGCAACAGTAGCAGCAACAGCAGTGTGAG CAGCAACAGCACCGCCACCGGCCGGAGCAGCAGCCGTAGCAGCAGGCACG CGCAGCTTTTGTCAGTGAAATCAAAGGAGGATGATGATTCAGTGTCGTTC TTAGCGGTGGCGGAGTCATCGAAGGCTAGCACGCCCACCTCTTCATCTTC ATACTGCTTTTCTGAAGAGGCGGAGCAGGAACAGGAGCGGCAGGAGCAGA GCAATGGGAAAGCTGCAGCGGCAGTAGGAGTGAGGACTGAGGCGGTGGCA CAAAGAATGGAGAGGAAGAAGACGAGGGAGAAGATGCGTAGACAGGAGGT AAATGATAAGCTCAACGAGTTGATGGAAGTACTGGTGGAGGCTGATAGCA AGGGGCAGACACCCGCGGAGAAGCAGCAGCAGCAGGCCCAGGCGGCAAGT ATTGACAAGGGGAATTTCCGGGTGGATGTGCTGTCGAGGGCCGTGAGGGT TATCAAGAGATTGAATGAGGAGGTGAAAGCCGGGCAAGCCGAGGTGGAGC GTCTGCGGGCTCAGCTCGAGCAGACTTTCCTTCAGCCCAAGCGGGAGCTG CAGCCCCAGGAGCAGCAGCAGCAGTCGCACCAACAGGAGACAGCGGTGGC CGATTCTTCTTCCGCGGAACGCCACAGCAGGCCCTGCAATACATCCACCT CGAGCAGCAAGAACAGCAGCAACAGCAGCAGCACCAAGCTGAATCAGTCC ATGACGTGGGTGACTGTGCCAATGTGGATGCCTTCTGGCCCCAATGTCGC GCATGGAGACCACGCGGCAGCCATGGCCCAGGCGAAGGGAATCATGCTTG ATGCGAATAACGGGGGGTATTGTGGCGCGAATGGAGCTACTCCCTTCCCA TATGCTACAATGCCTTTCTTTGTCCCTCAGCACGCGCAGGGGCATATTCA GAATGGAGGGATGGTAGGGATGCCTTCCATGATGATGCCAGCCGGGGGTG GTGGGTTAGTGGAGATGGGATTTGGTGGGGATGACGAGGGAGGGGTCGGA GCAGGACAGACAACTTCTTTTGCCGGGTTGGAGGTATGGGGGGAAGAGGC GCCGACACATGCGCCATGCGCATGA back to top