NO14G02080, NO14G02080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO14G02080 vs. NCBI_GenBank
Match: CBJ25663.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 84.0 bits (206), Expect = 9.800e-13 Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 0 Query: 16 EQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPG----LKPENP---------IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKA 143 EQ+ FID WL G L + L+YF+LS FYD+ NE+ RMQG + E L + GL+++ E+P L P P +FVIKK +R +V +YY+++ ++YQAPT+ ++ +RL + H LN A Sbjct: 11 EQRSFIDPVWLQQWG-LGPENALDYFALSPFYDKACNNEQCRMQGVDP--REGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNA 147
BLAST of NO14G02080 vs. NCBI_GenBank
Match: OAE35812.1 (hypothetical protein AXG93_4225s1150 [Marchantia polymorpha subsp. ruderalis] >PTQ46249.1 hypothetical protein MARPO_0012s0176 [Marchantia polymorpha]) HSP 1 Score: 82.8 bits (203), Expect = 2.200e-12 Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKA 143 F D W L PL + V +YFSLS FYDR NE+LRM+ + L M G++Y+ E E +FVI+K R E+ V+ YYVL +YQAP ++SV+ +R R H +++A Sbjct: 25 FRDQLW-LNQFPLDRNLVFDYFSLSPFYDRACSNEQLRMRQIHPLDSSQLTKMTGIEYILHEA----QEPHLFVIRKQRREGPEKTTVMSAYYVLDGSIYQAPQLYSVIGSRAVRAIHHISEA 142
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_006426448.1 (mediator of RNA polymerase II transcription subunit 6 [Citrus clementina] >ESR39688.1 hypothetical protein CICLE_v10026335mg [Citrus clementina]) HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12 Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGT 165 F D W L PL + + +YF+LS FYDR NE+LRM+ + + L M G++Y+ EV E +FVI+K R E+ + YYVL +YQAP + +V +AR+ R H + KA T + G +GGT Sbjct: 30 FRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEV----MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGT 169
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_006466167.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Citrus sinensis]) HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12 Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGT 165 F D W L PL + + +YF+LS FYDR NE+LRM+ + + L M G++Y+ EV E +FVI+K R E+ + YYVL +YQAP + +V +AR+ R H + KA T + G +GGT Sbjct: 30 FRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEV----MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGT 169
BLAST of NO14G02080 vs. NCBI_GenBank
Match: KDO58688.1 (hypothetical protein CISIN_1g025523mg [Citrus sinensis]) HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12 Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGT 165 F D W L PL + + +YF+LS FYDR NE+LRM+ + + L M G++Y+ EV E +FVI+K R E+ + YYVL +YQAP + +V +AR+ R H + KA T + G +GGT Sbjct: 30 FRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEV----MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGT 169
BLAST of NO14G02080 vs. NCBI_GenBank
Match: GAY38628.1 (hypothetical protein CUMW_038130 [Citrus unshiu]) HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12 Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGT 165 F D W L PL + + +YF+LS FYDR NE+LRM+ + + L M G++Y+ EV E +FVI+K R E+ + YYVL +YQAP + +V +AR+ R H + KA T + G +GGT Sbjct: 30 FRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEV----MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGT 169
BLAST of NO14G02080 vs. NCBI_GenBank
Match: KOO31137.1 (mediator of RNA polymerase ii transcription subunit 6 isoform 2 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 81.3 bits (199), Expect = 6.400e-12 Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = 0 Query: 11 TREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGA-----EDIRLEDLEMMRGLQY-----LAEEVPGLKPE---NPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEG 157 T + L + D W +NG L +VL+YF+ S+F+DR S N +LRMQG+ ++ E L + G+ + EE+P + + ++VI+K+ R L YYV+ +VY+APT+++V+ ARLRR L++A + RA A GG+G Sbjct: 10 TFDVLTTVSWEDRSW--WNGALNRGSVLDYFANSQFFDRASVNAQLRMQGSTARLPPEVAREQLARLPGIVFELDETRLEELPPTASDPAAHSLYVIRKLRRAPSGAETTLRYYYVMDGVVYEAPTLWAVVQARLRRLGWYLSEAFEA-ARAAANGGDG 165
BLAST of NO14G02080 vs. NCBI_GenBank
Match: CCI11082.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 80.9 bits (198), Expect = 8.300e-12 Identity = 52/152 (34.21%), Postives = 85/152 (55.92%), Query Frame = 0 Query: 8 EVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 EV+ Q F D W L + PL T+L YF+LS +YDR NE L+MQ + + L+ MRG++Y E P + P IF I+K R + + +++ +YYVL+ +YQ+P I ++L++RLR C+ + K+ + + + V + G Sbjct: 2 EVSAHADDYQSSFRDILW-LQSFPLNEQTILHYFALSPYYDRSCNNERLKMQ---RLSTDQLKNMRGIEY--EVAPNTAKQLPQQIFGIRKQRREGRTQIKLMAMYYVLEGTIYQSPNIHAMLSSRLRTCSFRVEKSFQMLAKGVRFSPTEG 147
BLAST of NO14G02080 vs. NCBI_GenBank
Match: OQS07473.1 (mediator of RNA polymerase II transcription subunit [Thraustotheca clavata]) HSP 1 Score: 80.5 bits (197), Expect = 1.100e-11 Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAE-DIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 F D W L L TV+ YF LS FYD+ N L MQGA + L M+G++Y E +P L + P +F+I+K R+ + Q + VYY + +YQAP F+++ +RL++C++ +NKA + V + G Sbjct: 20 FKDTVW-LSRFELTSQTVMYYFYLSPFYDKNCNNARLMMQGARFEEMASSLVNMQGVEY--ELLPNLSNQVPQTLFIIRKQFRSSRNSTQTMAVYYCVDQTIYQAPNTFTMITSRLKKCSYRINKAFDALSSGVRFSPTEG 157
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_005706157.1 (transcription regulator [Galdieria sulphuraria] >EME29637.1 transcription regulator [Galdieria sulphuraria]) HSP 1 Score: 78.6 bits (192), Expect = 4.100e-11 Identity = 46/127 (36.22%), Postives = 77/127 (60.63%), Query Frame = 0 Query: 23 NHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRA 150 ++W L N PL +TVL+YFS S FYD NE++RMQ + E L + G +Y+ + E FV++KV R +EE + L V+Y++Q VYQAP++ S+L +RL ++++ +++++A Sbjct: 19 DNWFLANFPLTQETVLDYFSGSPFYDPSCNNEQIRMQKLDP---EVLYNLVGTEYMVTN----QQEPVFFVVEKVYRYNREETKTLQVFYIIQGTVYQAPSLRSLLLSRLSESFFHISESFESLQQA 138 The following BLAST results are available for this feature:
BLAST of NO14G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO14G02080 ID=NO14G02080|Name=NO14G02080|organism=Nannochloropsis oceanica|type=gene|length=1861bpback to top protein sequence of NO14G02080.1 >NO14G02080.1-protein ID=NO14G02080.1-protein|Name=NO14G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bpback to top Synonyms
Publications
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