NO14G02080, NO14G02080 (gene) Nannochloropsis oceanica

Overview
NameNO14G02080
Unique NameNO14G02080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1861
Alignment locationchr14:629253..631113 -

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Properties
Property NameValue
DescriptionMediator of rna polymerase ii transcription
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:629253..631113 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: INTERPRO
TermDefinition
IPR007018Mediator_Med6
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Homology
BLAST of NO14G02080 vs. NCBI_GenBank
Match: CBJ25663.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 9.800e-13
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 0
Query:   16 EQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPG----LKPENP---------IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKA 143
            EQ+ FID  WL   G L  +  L+YF+LS FYD+   NE+ RMQG +    E L  + GL+++  E+P     L P  P         +FVIKK +R      +V  +YY+++ ++YQAPT+  ++ +RL +  H LN A
Sbjct:   11 EQRSFIDPVWLQQWG-LGPENALDYFALSPFYDKACNNEQCRMQGVDP--REGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNA 147          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: OAE35812.1 (hypothetical protein AXG93_4225s1150 [Marchantia polymorpha subsp. ruderalis] >PTQ46249.1 hypothetical protein MARPO_0012s0176 [Marchantia polymorpha])

HSP 1 Score: 82.8 bits (203), Expect = 2.200e-12
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 0
Query:   20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKA 143
            F D  W L   PL  + V +YFSLS FYDR   NE+LRM+    +    L  M G++Y+  E      E  +FVI+K  R   E+  V+  YYVL   +YQAP ++SV+ +R  R  H +++A
Sbjct:   25 FRDQLW-LNQFPLDRNLVFDYFSLSPFYDRACSNEQLRMRQIHPLDSSQLTKMTGIEYILHEA----QEPHLFVIRKQRREGPEKTTVMSAYYVLDGSIYQAPQLYSVIGSRAVRAIHHISEA 142          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_006426448.1 (mediator of RNA polymerase II transcription subunit 6 [Citrus clementina] >ESR39688.1 hypothetical protein CICLE_v10026335mg [Citrus clementina])

HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGT 165
            F D  W L   PL  + + +YF+LS FYDR   NE+LRM+    + +  L  M G++Y+  EV     E  +FVI+K  R   E+   +  YYVL   +YQAP + +V +AR+ R  H + KA  T    +   G      +GGT
Sbjct:   30 FRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEV----MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGT 169          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_006466167.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Citrus sinensis])

HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGT 165
            F D  W L   PL  + + +YF+LS FYDR   NE+LRM+    + +  L  M G++Y+  EV     E  +FVI+K  R   E+   +  YYVL   +YQAP + +V +AR+ R  H + KA  T    +   G      +GGT
Sbjct:   30 FRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEV----MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGT 169          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: KDO58688.1 (hypothetical protein CISIN_1g025523mg [Citrus sinensis])

HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGT 165
            F D  W L   PL  + + +YF+LS FYDR   NE+LRM+    + +  L  M G++Y+  EV     E  +FVI+K  R   E+   +  YYVL   +YQAP + +V +AR+ R  H + KA  T    +   G      +GGT
Sbjct:   30 FRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEV----MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGT 169          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: GAY38628.1 (hypothetical protein CUMW_038130 [Citrus unshiu])

HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGT 165
            F D  W L   PL  + + +YF+LS FYDR   NE+LRM+    + +  L  M G++Y+  EV     E  +FVI+K  R   E+   +  YYVL   +YQAP + +V +AR+ R  H + KA  T    +   G      +GGT
Sbjct:   30 FRDQLW-LNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEV----MEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEKIGYVDAENDGGT 169          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: KOO31137.1 (mediator of RNA polymerase ii transcription subunit 6 isoform 2 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 81.3 bits (199), Expect = 6.400e-12
Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = 0
Query:   11 TREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGA-----EDIRLEDLEMMRGLQY-----LAEEVPGLKPE---NPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEG 157
            T + L    + D  W  +NG L   +VL+YF+ S+F+DR S N +LRMQG+      ++  E L  + G+ +       EE+P    +   + ++VI+K+ R        L  YYV+  +VY+APT+++V+ ARLRR    L++A +   RA A GG+G
Sbjct:   10 TFDVLTTVSWEDRSW--WNGALNRGSVLDYFANSQFFDRASVNAQLRMQGSTARLPPEVAREQLARLPGIVFELDETRLEELPPTASDPAAHSLYVIRKLRRAPSGAETTLRYYYVMDGVVYEAPTLWAVVQARLRRLGWYLSEAFEA-ARAAANGGDG 165          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: CCI11082.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 80.9 bits (198), Expect = 8.300e-12
Identity = 52/152 (34.21%), Postives = 85/152 (55.92%), Query Frame = 0
Query:    8 EVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158
            EV+      Q  F D  W L + PL   T+L YF+LS +YDR   NE L+MQ    +  + L+ MRG++Y  E  P    + P  IF I+K  R  + + +++ +YYVL+  +YQ+P I ++L++RLR C+  + K+ + + + V +    G
Sbjct:    2 EVSAHADDYQSSFRDILW-LQSFPLNEQTILHYFALSPYYDRSCNNERLKMQ---RLSTDQLKNMRGIEY--EVAPNTAKQLPQQIFGIRKQRREGRTQIKLMAMYYVLEGTIYQSPNIHAMLSSRLRTCSFRVEKSFQMLAKGVRFSPTEG 147          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: OQS07473.1 (mediator of RNA polymerase II transcription subunit [Thraustotheca clavata])

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-11
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 0
Query:   20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAE-DIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158
            F D  W L    L   TV+ YF LS FYD+   N  L MQGA  +     L  M+G++Y  E +P L  + P  +F+I+K  R+ +   Q + VYY +   +YQAP  F+++ +RL++C++ +NKA   +   V +    G
Sbjct:   20 FKDTVW-LSRFELTSQTVMYYFYLSPFYDKNCNNARLMMQGARFEEMASSLVNMQGVEY--ELLPNLSNQVPQTLFIIRKQFRSSRNSTQTMAVYYCVDQTIYQAPNTFTMITSRLKKCSYRINKAFDALSSGVRFSPTEG 157          
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_005706157.1 (transcription regulator [Galdieria sulphuraria] >EME29637.1 transcription regulator [Galdieria sulphuraria])

HSP 1 Score: 78.6 bits (192), Expect = 4.100e-11
Identity = 46/127 (36.22%), Postives = 77/127 (60.63%), Query Frame = 0
Query:   23 NHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRA 150
            ++W L N PL  +TVL+YFS S FYD    NE++RMQ  +    E L  + G +Y+       + E   FV++KV R  +EE + L V+Y++Q  VYQAP++ S+L +RL      ++++ +++++A
Sbjct:   19 DNWFLANFPLTQETVLDYFSGSPFYDPSCNNEQIRMQKLDP---EVLYNLVGTEYMVTN----QQEPVFFVVEKVYRYNREETKTLQVFYIIQGTVYQAPSLRSLLLSRLSESFFHISESFESLQQA 138          
The following BLAST results are available for this feature:
BLAST of NO14G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ25663.19.800e-1337.14conserved unknown protein [Ectocarpus siliculosus][more]
OAE35812.12.200e-1239.02hypothetical protein AXG93_4225s1150 [Marchantia p... [more]
XP_006426448.13.700e-1235.86mediator of RNA polymerase II transcription subuni... [more]
XP_006466167.13.700e-1235.86PREDICTED: mediator of RNA polymerase II transcrip... [more]
KDO58688.13.700e-1235.86hypothetical protein CISIN_1g025523mg [Citrus sine... [more]
GAY38628.13.700e-1235.86hypothetical protein CUMW_038130 [Citrus unshiu][more]
KOO31137.16.400e-1234.59mediator of RNA polymerase ii transcription subuni... [more]
CCI11082.18.300e-1234.21unnamed protein product [Albugo candida][more]
OQS07473.11.100e-1134.75mediator of RNA polymerase II transcription subuni... [more]
XP_005706157.14.100e-1136.22transcription regulator [Galdieria sulphuraria] >E... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002424NSK002424Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02080.1NO14G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590298gene_5781Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100062g8gene5885Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02080.1NO14G02080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02080 ID=NO14G02080|Name=NO14G02080|organism=Nannochloropsis oceanica|type=gene|length=1861bp
ATGGCATCCGAGACCACTTCGGAAGTTGCCACGCGCGAGgtgagtggtct
tcgagagagtacggcagacgctgtgtggggaggaataaatagcggcacga
cgaaaatgtctggggccgcacttatcccctacttcattcgaccaagtccg
caaatattgccagacgcatctagctgtagacacacaagccgttcatgccc
cccgcatagatagtacctgttatctggattgagatgccagtgaaaattct
gtttaacagggagcccatatgtgcccccctccccccccccttgcctttgc
acaccgaattgtttctataagcacatacatcgtatatctttccatgctag
ttatagcatcatgttgttttcaattaacatttacccatgaaataagaatc
gtgtctccactcctttcacgtgaacagcaacgcttgattctacgaaaaga
tctgaaacccctcctccctctctccctgcctccctccatcccctccctgc
tccagGCACTTGAACAACAGCCCTTTATCGACAATCACTGGCTCCTCTAC
AATGGCCCGTTACGTCTTGACACTGTCCTCGAGTACTTTTCCCTCAGTAA
ATTTTATGACCGGCGTTCGTGCAATGAGGAGCTGCGGATGCAAGGCGCAG
AGGACATTCGTCTGGAAGATTTGGAGATGATGCGTGGTCTGCAATATTTA
GCGGAGGAGGTTCCGGGGCTCAAGCCAGAGAATCCAATTTTTGTTATTAA
GAAGgtacggggagggagaagggttggaagggagagtaaagtatgtctat
gacgtttttttacctcgtagtattaatcatcaagtggcttatcctctgtc
catccctgcttccttcagGTCCTCCGCACTGAAAAGGAGGAACCTCAGGT
TCTAGACGTGTACTATGTTTTGCAAAACATGGTCTACCAAGCCCCTACCA
TCTTCTCGGTTCTCAACGCGAGGCTGCGTCGTTGCGCCCACATGCTGAAC
AAGGCGCAAAAGACCATGAAGCGCGCCGTAGCCTATGGAGGAGAAGGAGG
AACCATAGAGGAGGGAGGGACGGAGGGAGGACAGGAAGCAGGATGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGCAGGTAGCGACATGTACCGCGTCGCTCGCAAGGTAGGAAAGGC
GGCTAAGAGGGCCAGGGCTGCTGCGGCGGCGGCCGCGGTGGAGACATCGG
AATTGAATGCAGAGATGAATCCTCCAACGGCTCATTACCATGGCTATCCT
TCATCTCCTCATTCACACCACCACGTCTACCAGCAGCACCCGCATCACCA
GTACCTGCAGCAGCAGCACTCAGAAGGAGAACCGATGgtgatggtggaag
gagtcgacgaccaccatcactattctcttccccccttgatgatgcccccc
cctccccccccctccctcatctgctcatcgagccctgctccccctccgct
gccaattccccctcctctccgtcagcggccctgctccaacaacagTACCA
GCAGCATCAGCAGCATCAAGAAGAGGAGCCACGCTTTACGTCGAGGTACC
CCGGGTCGAGTCCGCTGGCTGGTTTGTTGACCGACCACCACCCGGAAGAC
AGCGCAGCGGTGGATCGGGCGCTTGGAATCTTGgtaggtagagaataggg
gaggatgcagggagggtaaggcggaaggaattgggagttgcctttgggtg
gtgcacttatttatacgcatactcacgtgcgtacatacgcacacttttaa
atgtacaacacagCGGATGGAGGAAGTGGCTGGCGGACCTAGTGGTCGCA
AGGACGATTAG
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protein sequence of NO14G02080.1

>NO14G02080.1-protein ID=NO14G02080.1-protein|Name=NO14G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MASETTSEVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRR
SCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRT
EKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAV
AYGGEGGTIEEGGTEGGQEAGWGGGGGGGGGGGGGGGGGGGGAGSDMYRV
ARKVGKAAKRARAAAAAAAVETSELNAEMNPPTAHYHGYPSSPHSHHHVY
QQHPHHQYLQQQHSEGEPMYQQHQQHQEEEPRFTSRYPGSSPLAGLLTDH
HPEDSAAVDRALGILRMEEVAGGPSGRKDD*
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Synonyms
Publications