NO14G02080, NO14G02080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO14G02080 vs. NCBI_GenBank
Match: EWM24573.1 (mediator of rna polymerase ii transcription [Nannochloropsis gaditana]) HSP 1 Score: 274.6 bits (701), Expect = 3.900e-70 Identity = 232/332 (69.88%), Postives = 250/332 (75.30%), Query Frame = 0 Query: 1 MASETTSEVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNPPTA--HYHGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRFTSRYPGSSPLAGLLTDHHPEDSAAVDRALGILRMEEVAGGPSGRKDD 331 MASE+T+EVATRE EQQPF D HWL Y+GPLR D VLEYF+ SKFYDR SCNEELRMQGA D+R E L MRG+QYLAEEVPG PE+PIFVI+KVLRT+ E+PQV+DVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKT+ RAV+Y GG +E G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PRF SRYPG SPLA +T HPE+S AVDRA+GILRMEEVAGGP G K+D Sbjct: 70 MASESTTEVATRETAEQQPFTDPHWLYYHGPLRRDNVLEYFAHSKFYDRCSCNEELRMQGAIDVRQEHLAGMRGVQYLAEEVPGPVPEDPIFVIRKVLRTDSEQPQVMDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTLNRAVSYDCTGGGMEGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVTASAEMYPPSSPQYGFPPYSWQPQYSEGEPLVLVDGLDPSYALPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRFASRYPGPSPLAAAMTHPHPENSVAVDRAMGILRMEEVAGGPRGHKED 401
BLAST of NO14G02080 vs. NCBI_GenBank
Match: EWM24574.1 (mediator of rna polymerase ii transcription [Nannochloropsis gaditana]) HSP 1 Score: 249.6 bits (636), Expect = 1.400e-62 Identity = 220/317 (69.40%), Postives = 237/317 (74.76%), Query Frame = 0 Query: 1 MASETTSEVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENPIFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGGTIEEGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNPPTA--HYHGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRFTSRYPGSSPLAGLLTDHHPEDSAAVDRALGIL 316 MASE+T+EVATRE EQQPF D HWL Y+GPLR D VLEYF+ SKFYDR SCNEELRMQGA D+R E L MRG+QYLAEEVPG PE+PIFVI+KVLRT+ E+PQV+DVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKT+ RAV+Y GG +E G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PRF SRYPG SPLA +T HPE+S AVDRA+GIL Sbjct: 70 MASESTTEVATRETAEQQPFTDPHWLYYHGPLRRDNVLEYFAHSKFYDRCSCNEELRMQGAIDVRQEHLAGMRGVQYLAEEVPGPVPEDPIFVIRKVLRTDSEQPQVMDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTLNRAVSYDCTGGGMEGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVTASAEMYPPSSPQYGFPPYSWQPQYSEGEPLVLVDGLDPSYALPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPRFASRYPGPSPLAAAMTHPHPENSVAVDRAMGIL 386
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_008611185.1 (hypothetical protein SDRG_07145 [Saprolegnia diclina VS20] >EQC35435.1 hypothetical protein SDRG_07145 [Saprolegnia diclina VS20]) HSP 1 Score: 90.9 bits (224), Expect = 8.000e-15 Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 F D W L L TVL YF+LS FYD+ NE L+MQ + L+ L MRG++Y E +P L + P +++I+K RT K QV+ +YY L +YQAP F+++ +RL++C++ +NKA + + V + G Sbjct: 20 FKDTVW-LSTFELNFHTVLYYFALSPFYDKNCNNERLKMQ---RLPLDQLVNMRGIEY--ELLPNLSKQLPQTLYIIRKQFRTSKTSVQVMAIYYCLDQTIYQAPNTFTMITSRLKKCSYRINKAFQALSAGVRFSPTEG 153
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_012204444.1 (hypothetical protein SPRG_09628 [Saprolegnia parasitica CBS 223.65] >KDO24767.1 hypothetical protein SPRG_09628 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 90.9 bits (224), Expect = 8.000e-15 Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 F D W L L TVL YF+LS FYD+ NE L+MQ + L+ L MRG++Y E +P L + P +++I+K RT K QV+ +YY L +YQAP F+++ +RL++C++ +NKA + + V + G Sbjct: 20 FKDTVW-LSTFELNFHTVLYYFALSPFYDKNCNNERLKMQ---RLPLDQLVNMRGIEY--ELLPNLSKQLPQTLYIIRKQFRTSKTSVQVMAIYYCLDQTIYQAPNTFTMITSRLKKCSYRINKAFQALSAGVRFSPTEG 153
BLAST of NO14G02080 vs. NCBI_GenBank
Match: OQR98075.1 (mediator of RNA polymerase II transcription subunit [Achlya hypogyna]) HSP 1 Score: 90.5 bits (223), Expect = 1.100e-14 Identity = 58/157 (36.94%), Postives = 88/157 (56.05%), Query Frame = 0 Query: 4 ETTSEVATREALEQQP-FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 ET + +T A + F D W L L TVL YF+LS FYD+ NE L+MQ + L+ L MRG++Y E +P L + P +++I+K RT K QV+ VYY L +YQAP F+++ +RL++C++ +NKA + + V + G Sbjct: 3 ETATASSTAHADDYNACFKDTVW-LSTFELNHHTVLYYFALSPFYDKNCNNERLKMQ---RLPLDQLVNMRGIEY--ELLPNLSKQLPQTLYIIRKQFRTSKTNAQVMAVYYCLDQTIYQAPNTFTMITSRLKKCSYRINKAFQALSAGVRFSPTEG 153
BLAST of NO14G02080 vs. NCBI_GenBank
Match: KUF79054.1 (hypothetical protein AM587_10013189 [Phytophthora nicotianae]) HSP 1 Score: 89.7 bits (221), Expect = 1.800e-14 Identity = 57/152 (37.50%), Postives = 86/152 (56.58%), Query Frame = 0 Query: 8 EVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 EVA F D W L + PL TVL YF+LS FYDR NE L+MQ + L+ L+ +RG++Y E +P + P +F+I+K R+ + + + L +YYVL VYQAP I ++L +RL++C++ +NKA + V + G Sbjct: 39 EVAAHVDDYNASFRDTVW-LQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQ---RLGLDQLKNLRGVEY--ELLPNAAKQMPQQLFIIRKQRRSGRTQAEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG 184
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_008908612.1 (hypothetical protein PPTG_13897 [Phytophthora parasitica INRA-310] >ETI42636.1 hypothetical protein F443_12303 [Phytophthora parasitica P1569] >ETK82643.1 hypothetical protein L915_12022 [Phytophthora parasitica] >ETL36032.1 hypothetical protein L916_11946 [Phytophthora parasitica] >ETL89258.1 hypothetical protein L917_11792 [Phytophthora parasitica] >ETM42495.1 hypothetical protein L914_11857 [Phytophthora parasitica] >ETN06110.1 hypothetical protein PPTG_13897 [Phytophthora parasitica INRA-310] >ETO71231.1 hypothetical protein F444_12401 [Phytophthora parasitica P1976] >ETP12350.1 hypothetical protein F441_12288 [Phytophthora parasitica CJ01A1] >ETP40456.1 hypothetical protein F442_12217 [Phytophthora parasitica P10297]) HSP 1 Score: 89.4 bits (220), Expect = 2.300e-14 Identity = 57/152 (37.50%), Postives = 86/152 (56.58%), Query Frame = 0 Query: 8 EVATREALEQQPFIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 EVA F D W L + PL TVL YF+LS FYDR NE L+MQ + L+ L+ +RG++Y E +P + P +F+I+K R+ + + + L +YYVL VYQAP I ++L +RL++C++ +NKA + V + G Sbjct: 2 EVAAHVDDYNASFRDTVW-LQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQ---RLGLDQLKNLRGVEY--ELLPNAAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG 147
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_002898525.1 (mediator of RNA polymerase II transcription subunit, putative [Phytophthora infestans T30-4] >EEY63002.1 mediator of RNA polymerase II transcription subunit, putative [Phytophthora infestans T30-4]) HSP 1 Score: 89.0 bits (219), Expect = 3.100e-14 Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 F D W L + PL TVL YF+LS FYDR NE L+MQ + L+ L+ +RG++Y E +P + P +F+I+K R+ + + + L +YYVL VYQAP I ++L +RL++C++ +NKA + V + G Sbjct: 14 FRDTVW-LQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQ---RLGLDQLKNLRGVEY--ELLPNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG 147
BLAST of NO14G02080 vs. NCBI_GenBank
Match: GAX93879.1 (mediator of RNA polymerase II transcription subunit, putative [Pythium insidiosum]) HSP 1 Score: 88.6 bits (218), Expect = 4.000e-14 Identity = 54/140 (38.57%), Postives = 81/140 (57.86%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKAQKTMKRAVAYGGEGG 158 F D W L + PL TVL YF+LS FYDR NE L+MQ + L+ L+ MRG++Y E P L + P +F+++K R + + L +YYVL +YQAP I ++L +RL++C++ +NKA + V + G Sbjct: 14 FRDTVW-LQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQ---RLGLDQLKNMRGIEY--ELXPNLAKQLPQQLFLVQKQRRLGRTQVMPLAIYYVLDGTIYQAPNIXAMLTSRLKKCSYRVNKAFHALAAGVRFSPTEG 147
BLAST of NO14G02080 vs. NCBI_GenBank
Match: XP_024582412.1 (mediator of rna polymerase ii transcription [Plasmopara halstedii] >CEG46043.1 mediator of rna polymerase ii transcription [Plasmopara halstedii]) HSP 1 Score: 87.8 bits (216), Expect = 6.800e-14 Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 0 Query: 20 FIDNHWLLYNGPLRLDTVLEYFSLSKFYDRRSCNEELRMQGAEDIRLEDLEMMRGLQYLAEEVPGLKPENP--IFVIKKVLRTEKEEPQVLDVYYVLQNMVYQAPTIFSVLNARLRRCAHMLNKA 143 F D W L + PL TVL YF+LS FYDR NE L+MQ + L+ L+ +RG++Y E +P + P +++I+K R + + + L +YYVL VYQAP I ++L +RL++C++ +NKA Sbjct: 14 FRDTVW-LQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQ---RLGLDQLKNLRGVEY--ELLPNAAKQLPQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKA 132 The following BLAST results are available for this feature:
BLAST of NO14G02080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO14G02080 ID=NO14G02080|Name=NO14G02080|organism=Nannochloropsis oceanica|type=gene|length=1861bpback to top protein sequence of NO14G02080.1 >NO14G02080.1-protein ID=NO14G02080.1-protein|Name=NO14G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bpback to top Synonyms
Publications
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