NO14G01240, NO14G01240 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO14G01240 vs. NCBI_GenBank
Match: EWM24680.1 (Ribonuclease H2, subunit C [Nannochloropsis gaditana]) HSP 1 Score: 127.5 bits (319), Expect = 7.100e-26 Identity = 74/148 (50.00%), Postives = 92/148 (62.16%), Query Frame = 0 Query: 96 NSYRSGSR--GPLPATEPVLVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTL---------KESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRY 233 N Y GS GP +PVLVAS+R P PNA +HA+PCSI +DGPAA+NTYFMPR + +E ++ + ++ +E +G LYEAQFRGRFL+GI +CP+G GFVVRE VLP EL E APSAA NRY Sbjct: 6 NQYGDGSGVVGP-QRRDPVLVASVRDPQPNARIHAMPCSISYDGPAAVNTYFMPRDTTACETGMSAANNKAISRNGEEGAEGFSKRAKLGKEELLCVEGRLYEAQFRGRFLRGIGAACPQGMRGFVVRERVLPLELKEVAPSAALNRY 152
BLAST of NO14G01240 vs. NCBI_GenBank
Match: NP_181476.2 (ribonuclease H2 subunit C-like protein [Arabidopsis thaliana] >NP_001323596.1 ribonuclease H2 subunit C-like protein [Arabidopsis thaliana] >AEC09677.1 ribonuclease H2 subunit C-like protein [Arabidopsis thaliana] >OAP11000.1 hypothetical protein AXX17_AT2G36370 [Arabidopsis thaliana] >ANM61375.1 ribonuclease H2 subunit C-like protein [Arabidopsis thaliana]) HSP 1 Score: 79.0 bits (193), Expect = 2.900e-11 Identity = 50/167 (29.94%), Postives = 76/167 (45.51%), Query Frame = 0 Query: 126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAAT--NRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEVGKEGFIDEGGRDVV 291 VH LPC I DGP ++ YF P+ + V I VKT EA FRGR L+G S P G GFV+R++ ++ S T N+ W V+++F +LT W+HD P D + W +A ++ ++V + GG++ + Sbjct: 22 VHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKT--------------------------EEAHFRGRKLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHWFSIAEALHKPVKVEDLVAVSHGGKNKI 162
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_006295146.1 (ribonuclease H2 subunit C [Capsella rubella] >XP_023640450.1 ribonuclease H2 subunit C [Capsella rubella] >EOA28044.1 hypothetical protein CARUB_v10024218mg [Capsella rubella]) HSP 1 Score: 75.1 bits (183), Expect = 4.200e-10 Identity = 49/164 (29.88%), Postives = 75/164 (45.73%), Query Frame = 0 Query: 126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAAT--NRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEVGKEGFIDEGGR 288 VH LPC I DGPA ++ YF P+ + V I V+T EA FRGR L+G S P G GFV+ ++ ++ S+ T N W V+++F +LT W+HD P D + W +A ++ ++V + +GG+ Sbjct: 22 VHQLPCCIRFDGPAEVSHYFKPKSSEVEIDGVRT--------------------------EEAHFRGRKLQGATISLPSGYSGFVLGQTSNLNANGKRKASSVTEENPCWEVKAKFDNLTYWNHDNLPSKDDTFVRSFHWFNIAEALHKPVKVEDLVAVSQGGK 159
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_017432237.1 (PREDICTED: uncharacterized protein C12B10.15c [Vigna angularis] >KOM32857.1 hypothetical protein LR48_Vigan01g241300 [Vigna angularis] >BAT76146.1 hypothetical protein VIGAN_01410900 [Vigna angularis var. angularis]) HSP 1 Score: 73.2 bits (178), Expect = 1.600e-9 Identity = 43/148 (29.05%), Postives = 67/148 (45.27%), Query Frame = 0 Query: 123 NACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSV 271 + CVH LPC + HDGPA+++ YF P+ V + EG L EA FRGR L+G P G GFV+ + PP + + S W ++ F+ +T W+HD+ P + + W +A+++ Sbjct: 54 SGCVHQLPCCVKHDGPASVSHYFKPKYNGV-------------------------SDEGL-PLQEAHFRGRLLQGTTLQLPHGYSGFVLAKKTSPPSSKQYSNS------WVTKATFQDITYWNHDYVPSHNDEMLRAFHWLTVAKAL 169
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_020883756.1 (ribonuclease H2 subunit C [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 72.8 bits (177), Expect = 2.100e-9 Identity = 50/153 (32.68%), Postives = 70/153 (45.75%), Query Frame = 0 Query: 126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVV-RESVLPPELAEKAP-SAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEV 277 VH LPC I DGPA ++ YF P+ + V I V+T EA FRGR L+G S P G GFV+ + S L KA A N+ W V+++F +LT W+HD P D + W +A ++ ++V Sbjct: 22 VHQLPCCIRFDGPADVSHYFKPQSSDVEIDGVRT--------------------------EEAHFRGRKLQGATISLPSGYSGFVLGQASNLNANGKRKASMPAEENQCWEVKAKFDNLTYWNHDSLPSKDDTFLRSFHWFSIAEALHKPVKV 148
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_007154857.1 (hypothetical protein PHAVU_003G153500g [Phaseolus vulgaris] >ESW26851.1 hypothetical protein PHAVU_003G153500g [Phaseolus vulgaris]) HSP 1 Score: 71.6 bits (174), Expect = 4.600e-9 Identity = 44/145 (30.34%), Postives = 66/145 (45.52%), Query Frame = 0 Query: 126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSV 271 VH LPC + HDGPA+++ YF P+ N V D EG L EA FRGR L+G P+G GFV+ + P A S + W ++ F+ +T W+HD+ P + + W +A+++ Sbjct: 19 VHQLPCCVKHDGPASVSHYFKPK---------------------HNGVSD----EGL-PLQEAHFRGRLLQGTTLQLPQGYSGFVLAKKTSP------ASSKQNSNSWDTKATFQDITYWNHDYVPSHNDEMFRAFHWLTVAKAL 131
BLAST of NO14G01240 vs. NCBI_GenBank
Match: AAC27835.1 (hypothetical protein [Arabidopsis thaliana]) HSP 1 Score: 71.2 bits (173), Expect = 6.000e-9 Identity = 44/148 (29.73%), Postives = 71/148 (47.97%), Query Frame = 0 Query: 126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAAT--NRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVS 272 VH LPC I DGP ++ YF P+ + ++ + + +D + + EA FRGR L+G S P G GFV+R++ ++ S T N+ W V+++F +LT W+HD P D + W +A +V+ Sbjct: 92 VHQLPCCIRFDGPVEVSHYFKPKSSVRLMWKAVEFVDV--------EIDGVKTE-------EAHFRGRKLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHWFSIAEAVT 224
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_003444649.1 (PREDICTED: ribonuclease H2 subunit C isoform X2 [Oreochromis niloticus] >XP_005467579.1 PREDICTED: ribonuclease H2 subunit C isoform X2 [Oreochromis niloticus]) HSP 1 Score: 70.9 bits (172), Expect = 7.900e-9 Identity = 49/163 (30.06%), Postives = 66/163 (40.49%), Query Frame = 0 Query: 113 LVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGME 276 L AS P A VH +PC I H+GPA +N YF T K+ Q + FRGR LKG + SCP+G G V++E K S +R V S F +T W+ + PP D +W LA ++ +E Sbjct: 10 LCASSVGQAPQAPVHLMPCEIEHNGPAQVNQYF-----------TATTKDQKQDKS-------------------VSFRGRGLKGQKISCPQGYTGLVLKE-------INKPGSDQEDRTVKVSSVFDKMTYWNLETPPNSDDTIVMAMDWPDLAEAIHAPVE 135
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_010509014.1 (PREDICTED: ribonuclease H2 subunit C-like [Camelina sativa] >XP_019101246.1 PREDICTED: ribonuclease H2 subunit C-like [Camelina sativa]) HSP 1 Score: 70.9 bits (172), Expect = 7.900e-9 Identity = 52/166 (31.33%), Postives = 73/166 (43.98%), Query Frame = 0 Query: 126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVV-RESVLPPELAEKAPSAA-TNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEV-GKEGFIDEGGRD 289 VH LPC I DGP+ ++ YF P+ + V I VKT EA FRGR L+G S P G GFV+ + S L KA S N W +++F +LT W+HD P D + W +A ++ ++V + GG+D Sbjct: 22 VHQLPCCIRFDGPSEVSHYFKPKSSEVEIDGVKT--------------------------EEAHFRGRKLQGATISLPSGYSGFVLGQASDLNANGKRKASSITDENPCWEAKAKFDNLTYWNHDNLPSKDDTFVRSFHWFNIAEALHKPVKVEDLVAAVSHGGKD 161
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_013126408.1 (PREDICTED: ribonuclease H2 subunit C isoform X1 [Oreochromis niloticus]) HSP 1 Score: 70.9 bits (172), Expect = 7.900e-9 Identity = 49/163 (30.06%), Postives = 66/163 (40.49%), Query Frame = 0 Query: 113 LVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGME 276 L AS P A VH +PC I H+GPA +N YF T K+ Q + FRGR LKG + SCP+G G V++E K S +R V S F +T W+ + PP D +W LA ++ +E Sbjct: 11 LCASSVGQAPQAPVHLMPCEIEHNGPAQVNQYF-----------TATTKDQKQDKS-------------------VSFRGRGLKGQKISCPQGYTGLVLKE-------INKPGSDQEDRTVKVSSVFDKMTYWNLETPPNSDDTIVMAMDWPDLAEAIHAPVE 136 The following BLAST results are available for this feature:
BLAST of NO14G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO14G01240 ID=NO14G01240|Name=NO14G01240|organism=Nannochloropsis oceanica|type=gene|length=1836bpback to top protein sequence of NO14G01240.1 >NO14G01240.1-protein ID=NO14G01240.1-protein|Name=NO14G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bpback to top protein sequence of NO14G01240.2 >NO14G01240.2-protein ID=NO14G01240.2-protein|Name=NO14G01240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=303bpback to top Synonyms
Publications
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