NO14G01240, NO14G01240 (gene) Nannochloropsis oceanica

Overview
NameNO14G01240
Unique NameNO14G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1836
Alignment locationchr14:402684..404519 +

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Properties
Property NameValue
DescriptionRibonuclease H2, subunit C
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:402684..404519 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006401RNA catabolic process
GO:0006401RNA catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0032299ribonuclease H2 complex
GO:0032299ribonuclease H2 complex
Vocabulary: INTERPRO
TermDefinition
IPR013924RNase_H2_suC
Homology
BLAST of NO14G01240 vs. NCBI_GenBank
Match: EWM24680.1 (Ribonuclease H2, subunit C [Nannochloropsis gaditana])

HSP 1 Score: 127.5 bits (319), Expect = 7.100e-26
Identity = 74/148 (50.00%), Postives = 92/148 (62.16%), Query Frame = 0
Query:   96 NSYRSGSR--GPLPATEPVLVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTL---------KESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRY 233
            N Y  GS   GP    +PVLVAS+R P PNA +HA+PCSI +DGPAA+NTYFMPR        +            +E ++  +   ++  +E    +G LYEAQFRGRFL+GI  +CP+G  GFVVRE VLP EL E APSAA NRY
Sbjct:    6 NQYGDGSGVVGP-QRRDPVLVASVRDPQPNARIHAMPCSISYDGPAAVNTYFMPRDTTACETGMSAANNKAISRNGEEGAEGFSKRAKLGKEELLCVEGRLYEAQFRGRFLRGIGAACPQGMRGFVVRERVLPLELKEVAPSAALNRY 152          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: NP_181476.2 (ribonuclease H2 subunit C-like protein [Arabidopsis thaliana] >NP_001323596.1 ribonuclease H2 subunit C-like protein [Arabidopsis thaliana] >AEC09677.1 ribonuclease H2 subunit C-like protein [Arabidopsis thaliana] >OAP11000.1 hypothetical protein AXX17_AT2G36370 [Arabidopsis thaliana] >ANM61375.1 ribonuclease H2 subunit C-like protein [Arabidopsis thaliana])

HSP 1 Score: 79.0 bits (193), Expect = 2.900e-11
Identity = 50/167 (29.94%), Postives = 76/167 (45.51%), Query Frame = 0
Query:  126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAAT--NRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEVGKEGFIDEGGRDVV 291
            VH LPC I  DGP  ++ YF P+ + V I  VKT                           EA FRGR L+G   S P G  GFV+R++       ++  S  T  N+ W V+++F +LT W+HD  P  D    +   W  +A ++   ++V     +  GG++ +
Sbjct:   22 VHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKT--------------------------EEAHFRGRKLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHWFSIAEALHKPVKVEDLVAVSHGGKNKI 162          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_006295146.1 (ribonuclease H2 subunit C [Capsella rubella] >XP_023640450.1 ribonuclease H2 subunit C [Capsella rubella] >EOA28044.1 hypothetical protein CARUB_v10024218mg [Capsella rubella])

HSP 1 Score: 75.1 bits (183), Expect = 4.200e-10
Identity = 49/164 (29.88%), Postives = 75/164 (45.73%), Query Frame = 0
Query:  126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAAT--NRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEVGKEGFIDEGGR 288
            VH LPC I  DGPA ++ YF P+ + V I  V+T                           EA FRGR L+G   S P G  GFV+ ++       ++  S+ T  N  W V+++F +LT W+HD  P  D    +   W  +A ++   ++V     + +GG+
Sbjct:   22 VHQLPCCIRFDGPAEVSHYFKPKSSEVEIDGVRT--------------------------EEAHFRGRKLQGATISLPSGYSGFVLGQTSNLNANGKRKASSVTEENPCWEVKAKFDNLTYWNHDNLPSKDDTFVRSFHWFNIAEALHKPVKVEDLVAVSQGGK 159          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_017432237.1 (PREDICTED: uncharacterized protein C12B10.15c [Vigna angularis] >KOM32857.1 hypothetical protein LR48_Vigan01g241300 [Vigna angularis] >BAT76146.1 hypothetical protein VIGAN_01410900 [Vigna angularis var. angularis])

HSP 1 Score: 73.2 bits (178), Expect = 1.600e-9
Identity = 43/148 (29.05%), Postives = 67/148 (45.27%), Query Frame = 0
Query:  123 NACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSV 271
            + CVH LPC + HDGPA+++ YF P+   V                         + EG   L EA FRGR L+G     P G  GFV+ +   PP   + + S      W  ++ F+ +T W+HD+ P  +    +   W  +A+++
Sbjct:   54 SGCVHQLPCCVKHDGPASVSHYFKPKYNGV-------------------------SDEGL-PLQEAHFRGRLLQGTTLQLPHGYSGFVLAKKTSPPSSKQYSNS------WVTKATFQDITYWNHDYVPSHNDEMLRAFHWLTVAKAL 169          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_020883756.1 (ribonuclease H2 subunit C [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 72.8 bits (177), Expect = 2.100e-9
Identity = 50/153 (32.68%), Postives = 70/153 (45.75%), Query Frame = 0
Query:  126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVV-RESVLPPELAEKAP-SAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEV 277
            VH LPC I  DGPA ++ YF P+ + V I  V+T                           EA FRGR L+G   S P G  GFV+ + S L      KA   A  N+ W V+++F +LT W+HD  P  D    +   W  +A ++   ++V
Sbjct:   22 VHQLPCCIRFDGPADVSHYFKPQSSDVEIDGVRT--------------------------EEAHFRGRKLQGATISLPSGYSGFVLGQASNLNANGKRKASMPAEENQCWEVKAKFDNLTYWNHDSLPSKDDTFLRSFHWFSIAEALHKPVKV 148          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_007154857.1 (hypothetical protein PHAVU_003G153500g [Phaseolus vulgaris] >ESW26851.1 hypothetical protein PHAVU_003G153500g [Phaseolus vulgaris])

HSP 1 Score: 71.6 bits (174), Expect = 4.600e-9
Identity = 44/145 (30.34%), Postives = 66/145 (45.52%), Query Frame = 0
Query:  126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSV 271
            VH LPC + HDGPA+++ YF P+                      N V D    EG   L EA FRGR L+G     P+G  GFV+ +   P      A S   +  W  ++ F+ +T W+HD+ P  +    +   W  +A+++
Sbjct:   19 VHQLPCCVKHDGPASVSHYFKPK---------------------HNGVSD----EGL-PLQEAHFRGRLLQGTTLQLPQGYSGFVLAKKTSP------ASSKQNSNSWDTKATFQDITYWNHDYVPSHNDEMFRAFHWLTVAKAL 131          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: AAC27835.1 (hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 71.2 bits (173), Expect = 6.000e-9
Identity = 44/148 (29.73%), Postives = 71/148 (47.97%), Query Frame = 0
Query:  126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAAT--NRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVS 272
            VH LPC I  DGP  ++ YF P+ +  ++ +     +          +D  + +       EA FRGR L+G   S P G  GFV+R++       ++  S  T  N+ W V+++F +LT W+HD  P  D    +   W  +A +V+
Sbjct:   92 VHQLPCCIRFDGPVEVSHYFKPKSSVRLMWKAVEFVDV--------EIDGVKTE-------EAHFRGRKLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHWFSIAEAVT 224          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_003444649.1 (PREDICTED: ribonuclease H2 subunit C isoform X2 [Oreochromis niloticus] >XP_005467579.1 PREDICTED: ribonuclease H2 subunit C isoform X2 [Oreochromis niloticus])

HSP 1 Score: 70.9 bits (172), Expect = 7.900e-9
Identity = 49/163 (30.06%), Postives = 66/163 (40.49%), Query Frame = 0
Query:  113 LVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGME 276
            L AS     P A VH +PC I H+GPA +N YF             T K+  Q  +                     FRGR LKG + SCP+G  G V++E         K  S   +R   V S F  +T W+ + PP  D       +W  LA ++   +E
Sbjct:   10 LCASSVGQAPQAPVHLMPCEIEHNGPAQVNQYF-----------TATTKDQKQDKS-------------------VSFRGRGLKGQKISCPQGYTGLVLKE-------INKPGSDQEDRTVKVSSVFDKMTYWNLETPPNSDDTIVMAMDWPDLAEAIHAPVE 135          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_010509014.1 (PREDICTED: ribonuclease H2 subunit C-like [Camelina sativa] >XP_019101246.1 PREDICTED: ribonuclease H2 subunit C-like [Camelina sativa])

HSP 1 Score: 70.9 bits (172), Expect = 7.900e-9
Identity = 52/166 (31.33%), Postives = 73/166 (43.98%), Query Frame = 0
Query:  126 VHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVV-RESVLPPELAEKAPSAA-TNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGMEV-GKEGFIDEGGRD 289
            VH LPC I  DGP+ ++ YF P+ + V I  VKT                           EA FRGR L+G   S P G  GFV+ + S L      KA S    N  W  +++F +LT W+HD  P  D    +   W  +A ++   ++V      +  GG+D
Sbjct:   22 VHQLPCCIRFDGPSEVSHYFKPKSSEVEIDGVKT--------------------------EEAHFRGRKLQGATISLPSGYSGFVLGQASDLNANGKRKASSITDENPCWEAKAKFDNLTYWNHDNLPSKDDTFVRSFHWFNIAEALHKPVKVEDLVAAVSHGGKD 161          
BLAST of NO14G01240 vs. NCBI_GenBank
Match: XP_013126408.1 (PREDICTED: ribonuclease H2 subunit C isoform X1 [Oreochromis niloticus])

HSP 1 Score: 70.9 bits (172), Expect = 7.900e-9
Identity = 49/163 (30.06%), Postives = 66/163 (40.49%), Query Frame = 0
Query:  113 LVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFPPPLDHCSHQVEEWGKLARSVSVGME 276
            L AS     P A VH +PC I H+GPA +N YF             T K+  Q  +                     FRGR LKG + SCP+G  G V++E         K  S   +R   V S F  +T W+ + PP  D       +W  LA ++   +E
Sbjct:   11 LCASSVGQAPQAPVHLMPCEIEHNGPAQVNQYF-----------TATTKDQKQDKS-------------------VSFRGRGLKGQKISCPQGYTGLVLKE-------INKPGSDQEDRTVKVSSVFDKMTYWNLETPPNSDDTIVMAMDWPDLAEAIHAPVE 136          
The following BLAST results are available for this feature:
BLAST of NO14G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24680.17.100e-2650.00Ribonuclease H2, subunit C [Nannochloropsis gadita... [more]
NP_181476.22.900e-1129.94ribonuclease H2 subunit C-like protein [Arabidopsi... [more]
XP_006295146.14.200e-1029.88ribonuclease H2 subunit C [Capsella rubella] >XP_0... [more]
XP_017432237.11.600e-929.05PREDICTED: uncharacterized protein C12B10.15c [Vig... [more]
XP_020883756.12.100e-932.68ribonuclease H2 subunit C [Arabidopsis lyrata subs... [more]
XP_007154857.14.600e-930.34hypothetical protein PHAVU_003G153500g [Phaseolus ... [more]
AAC27835.16.000e-929.73hypothetical protein [Arabidopsis thaliana][more]
XP_003444649.17.900e-930.06PREDICTED: ribonuclease H2 subunit C isoform X2 [O... [more]
XP_010509014.17.900e-931.33PREDICTED: ribonuclease H2 subunit C-like [Camelin... [more]
XP_013126408.17.900e-930.06PREDICTED: ribonuclease H2 subunit C isoform X1 [O... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01240.1NO14G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G01240.2NO14G01240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590007gene_5691Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100123g16gene5799Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01240.1NO14G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G01240.2NO14G01240.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01240 ID=NO14G01240|Name=NO14G01240|organism=Nannochloropsis oceanica|type=gene|length=1836bp
GTTGCGTAGGGTTGGGCTAGCTGTGAGGCGTGTGAATGGGGGGGTTGGTG
TTTGGTGTGAGGAGGTTTGCTAGGGTTGGATGAAGGCGCTGCTGGGACGG
TGGCGCAAATTATTCTGCCAGACAGTGGAATTGGTCCCTCTTCCTCCTCC
TCGTAGTCATCGTCCCTGTCATGGTTGTAGTAGCGGTGAGGCACGCGTGT
GTGAGGATGGAGGGCACACGGAAGACGCCGGAAGCAGCGTTTTCTCGCGG
AAATCGCTCACATCTCCTCCCACCCTTTTTCGATGCTCTCACCTCACGAA
CCCGCTACGGTCCTTACACAGAATGGACAACGAGACAGTCGACCAAGGCA
GCAAATGTAGCGGCAACAGCTACCGCAGTGGGAGTCGGGGCCCGCTGCCA
GCAACCGAGCCTGTGCTAGTCGCCTCCATCCGCGCCCCGACTCCTAACGC
CTGTGTGCACGCCTTGCCGTGTTCCATCCATCACGACGGCCCCGCGGCCA
TCAACACGTACTTCATGCCTCGCAAAGCAGCAGTAGTAATTCCAGAGGTG
AAAACCCTGAAAGAATCTTCCCAAAgtaaggaagggataggggaaggcgt
gcagtagctgtagtggtagaaagttccataccaccgtcaaccccacaaca
cagAATCGACAGACGAGAACCGGGTGGATGATCAAGAGAATCAAGAAGGC
CAAGGTCATTTGTACGAGGCTCAATTTCGGGGCCGTTTTTTGAAAGgtat
gccgtgcctctccgctttcccaacagaatgagcgagggcatgaaggacga
cgcataccaacaaagggaattcctgtttggattcctcaagttttgaaaga
acaactgctcagcaacctctttcattcattgcatctctgcagGCATCCGC
ACGAGCTGCCCCAAGGGCACTGTTGGCTTCGTGGTGCGAGAGAGTGTTTT
GCCTCCAGAGCTGGCCGAGAAGGCCCCGTCAGCAGCGACCAACAGgtgag
ggagtggtatgggaggagccgggagagagactatagatgtttgaattttg
tcgcggtatagatatagacgacttcctccattcgtttccccccgctctcc
ttcctccttattctcacctttcctctccaccctccatctagGTATTGGTC
GGTGGAATCCGAGTTCCGGCATTTGACGTTGTGGCATCACGATTTTCCCC
CACCGCTGGACCACTGCTCACATCAAGTGGAGGAGTGGGGCAAGCTTGCT
CGGTCGGTGAGTGTGGGAATGGAGGTCGGGAAAGAGGGTTTTATTGACGA
GGGGGGGCGTGATGTGGTGAAGGGAAGGGAGAGAGACGAGGAGGACGGAA
GCGGATAGAGAGGGATTGAATGCGATTTTAATGCTTGATCAGGTAGTCAA
CTCATTATTCACGTACCACAGATTCACGAGGACACGGACTAAGAGGAGAG
GATGGTGAATTCTGGGGGGATACCTTCCCGGAAGCATGCTGAATGGAGAC
AGATGTGCGACTTATTAAACATTGCATGGAGGACAAAGTGAAGTATTGTG
TGTAGACATGGAACGTGCAAGGTATGGCTGTCATTTGGTGCTGCATGCAG
TACTTGTGTAAATACGACAAGTGGGATGAAAGAAGGGAGGGAGTGAGTGA
GGAGGGGGGATGGGGTTGAGCCGCGACAGCCTTGTCTTGTCTTATTTAAA
ATTAAAAGTACGAATCAAATATTTATTGCGGAAGCCGCATGAACGCCCTG
TTTCTTTTCTTCTTTGCTGTCCAATATGTTGCCGCCCCAATAACTGCTAC
GGTCTCTGCTTCTGAGAAAACGCCGCTCTTGAGTAT
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protein sequence of NO14G01240.1

>NO14G01240.1-protein ID=NO14G01240.1-protein|Name=NO14G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MKALLGRWRKLFCQTVELVPLPPPRSHRPCHGCSSGEARVCEDGGHTEDA
GSSVFSRKSLTSPPTLFRCSHLTNPLRSLHRMDNETVDQGSKCSGNSYRS
GSRGPLPATEPVLVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKA
AVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRT
SCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFP
PPLDHCSHQVEEWGKLARSIHEDTD*
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protein sequence of NO14G01240.2

>NO14G01240.2-protein ID=NO14G01240.2-protein|Name=NO14G01240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MKALLGRWRKLFCQTVELVPLPPPRSHRPCHGCSSGEARVCEDGGHTEDA
GSSVFSRKSLTSPPTLFRCSHLTNPLRSLHRMDNETVDQGSKCSGNSYRS
GSRGPLPATEPVLVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKA
AVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRT
SCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFP
PPLDHCSHQVEEWGKLARSVSVGMEVGKEGFIDEGGRDVVKGRERDEEDG
SG*
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Synonyms
Publications