NO14G01240.1, NO14G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01240.1
Unique NameNO14G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1301
Alignment locationchr14:402684..404519 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:402684..404519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01240.1 vs.
Match: EWM24680.1 (Ribonuclease H2, subunit C [Nannochloropsis gaditana])

HSP 1 Score: 127.5 bits (319), Expect = 6.500e-26
Identity = 74/148 (50.00%), Postives = 92/148 (62.16%), Query Frame = 0 
Query:   96 NSYRSGSR--GPLPATEPVLVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKAAVVIPEVKTL---------KESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRTSCPKGTVGFVVRESVLPPELAEKAPSAATNRY 233
            N Y  GS   GP    +PVLVAS+R P PNA +HA+PCSI +DGPAA+NTYFMPR        +            +E ++  +   ++  +E    +G LYEAQFRGRFL+GI  +CP+G  GFVVRE VLP EL E APSAA NRY
Sbjct:    6 NQYGDGSGVVGP-QRRDPVLVASVRDPQPNARIHAMPCSISYDGPAAVNTYFMPRDTTACETGMSAANNKAISRNGEEGAEGFSKRAKLGKEELLCVEGRLYEAQFRGRFLRGIGAACPQGMRGFVVRERVLPLELKEVAPSAALNRY 152
The following BLAST results are available for this feature:
BLAST of NO14G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24680.16.500e-2650.00Ribonuclease H2, subunit C [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01240NO14G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01240.1NO14G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01240.1.cds1NO14G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01240.1.cds2NO14G01240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01240.1.cds3NO14G01240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01240.1.cds4NO14G01240.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01240.1.cds5NO14G01240.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01240.1 ID=NO14G01240.1|Name=NO14G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
GTTGCGTAGGGTTGGGCTAGCTGTGAGGCGTGTGAATGGGGGGGTTGGTG
TTTGGTGTGAGGAGGTTTGCTAGGGTTGGATGAAGGCGCTGCTGGGACGG
TGGCGCAAATTATTCTGCCAGACAGTGGAATTGGTCCCTCTTCCTCCTCC
TCGTAGTCATCGTCCCTGTCATGGTTGTAGTAGCGGTGAGGCACGCGTGT
GTGAGGATGGAGGGCACACGGAAGACGCCGGAAGCAGCGTTTTCTCGCGG
AAATCGCTCACATCTCCTCCCACCCTTTTTCGATGCTCTCACCTCACGAA
CCCGCTACGGTCCTTACACAGAATGGACAACGAGACAGTCGACCAAGGCA
GCAAATGTAGCGGCAACAGCTACCGCAGTGGGAGTCGGGGCCCGCTGCCA
GCAACCGAGCCTGTGCTAGTCGCCTCCATCCGCGCCCCGACTCCTAACGC
CTGTGTGCACGCCTTGCCGTGTTCCATCCATCACGACGGCCCCGCGGCCA
TCAACACGTACTTCATGCCTCGCAAAGCAGCAGTAGTAATTCCAGAGGTG
AAAACCCTGAAAGAATCTTCCCAAAAATCGACAGACGAGAACCGGGTGGA
TGATCAAGAGAATCAAGAAGGCCAAGGTCATTTGTACGAGGCTCAATTTC
GGGGCCGTTTTTTGAAAGGCATCCGCACGAGCTGCCCCAAGGGCACTGTT
GGCTTCGTGGTGCGAGAGAGTGTTTTGCCTCCAGAGCTGGCCGAGAAGGC
CCCGTCAGCAGCGACCAACAGGTATTGGTCGGTGGAATCCGAGTTCCGGC
ATTTGACGTTGTGGCATCACGATTTTCCCCCACCGCTGGACCACTGCTCA
CATCAAGTGGAGGAGTGGGGCAAGCTTGCTCGGTCGATTCACGAGGACAC
GGACTAAGAGGAGAGGATGGTGAATTCTGGGGGGATACCTTCCCGGAAGC
ATGCTGAATGGAGACAGATGTGCGACTTATTAAACATTGCATGGAGGACA
AAGTGAAGTATTGTGTGTAGACATGGAACGTGCAAGGTATGGCTGTCATT
TGGTGCTGCATGCAGTACTTGTGTAAATACGACAAGTGGGATGAAAGAAG
GGAGGGAGTGAGTGAGGAGGGGGGATGGGGTTGAGCCGCGACAGCCTTGT
CTTGTCTTATTTAAAATTAAAAGTACGAATCAAATATTTATTGCGGAAGC
CGCATGAACGCCCTGTTTCTTTTCTTCTTTGCTGTCCAATATGTTGCCGC
CCCAATAACTGCTACGGTCTCTGCTTCTGAGAAAACGCCGCTCTTGAGTA
T
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protein sequence of NO14G01240.1

>NO14G01240.1-protein ID=NO14G01240.1-protein|Name=NO14G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MKALLGRWRKLFCQTVELVPLPPPRSHRPCHGCSSGEARVCEDGGHTEDA
GSSVFSRKSLTSPPTLFRCSHLTNPLRSLHRMDNETVDQGSKCSGNSYRS
GSRGPLPATEPVLVASIRAPTPNACVHALPCSIHHDGPAAINTYFMPRKA
AVVIPEVKTLKESSQKSTDENRVDDQENQEGQGHLYEAQFRGRFLKGIRT
SCPKGTVGFVVRESVLPPELAEKAPSAATNRYWSVESEFRHLTLWHHDFP
PPLDHCSHQVEEWGKLARSIHEDTD*
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mRNA from alignment at chr14:402684..404519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01240.1 ID=NO14G01240.1|Name=NO14G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp|location=Sequence derived from alignment at chr14:402684..404519+ (Nannochloropsis oceanica)
GTTGCGTAGGGTTGGGCTAGCTGTGAGGCGTGTGAATGGGGGGGTTGGTG
TTTGGTGTGAGGAGGTTTGCTAGGGTTGGATGAAGGCGCTGCTGGGACGG
TGGCGCAAATTATTCTGCCAGACAGTGGAATTGGTCCCTCTTCCTCCTCC
TCGTAGTCATCGTCCCTGTCATGGTTGTAGTAGCGGTGAGGCACGCGTGT
GTGAGGATGGAGGGCACACGGAAGACGCCGGAAGCAGCGTTTTCTCGCGG
AAATCGCTCACATCTCCTCCCACCCTTTTTCGATGCTCTCACCTCACGAA
CCCGCTACGGTCCTTACACAGAATGGACAACGAGACAGTCGACCAAGGCA
GCAAATGTAGCGGCAACAGCTACCGCAGTGGGAGTCGGGGCCCGCTGCCA
GCAACCGAGCCTGTGCTAGTCGCCTCCATCCGCGCCCCGACTCCTAACGC
CTGTGTGCACGCCTTGCCGTGTTCCATCCATCACGACGGCCCCGCGGCCA
TCAACACGTACTTCATGCCTCGCAAAGCAGCAGTAGTAATTCCAGAGGTG
AAAACCCTGAAAGAATCTTCCCAAAGTAAGGAAGGGATAGGGGAAGGCGT
GCAGTAGCTGTAGTGGTAGAAAGTTCCATACCACCGTCAACCCCACAACA
CAGAATCGACAGACGAGAACCGGGTGGATGATCAAGAGAATCAAGAAGGC
CAAGGTCATTTGTACGAGGCTCAATTTCGGGGCCGTTTTTTGAAAGGTAT
GCCGTGCCTCTCCGCTTTCCCAACAGAATGAGCGAGGGCATGAAGGACGA
CGCATACCAACAAAGGGAATTCCTGTTTGGATTCCTCAAGTTTTGAAAGA
ACAACTGCTCAGCAACCTCTTTCATTCATTGCATCTCTGCAGGCATCCGC
ACGAGCTGCCCCAAGGGCACTGTTGGCTTCGTGGTGCGAGAGAGTGTTTT
GCCTCCAGAGCTGGCCGAGAAGGCCCCGTCAGCAGCGACCAACAGGTGAG
GGAGTGGTATGGGAGGAGCCGGGAGAGAGACTATAGATGTTTGAATTTTG
TCGCGGTATAGATATAGACGACTTCCTCCATTCGTTTCCCCCCGCTCTCC
TTCCTCCTTATTCTCACCTTTCCTCTCCACCCTCCATCTAGGTATTGGTC
GGTGGAATCCGAGTTCCGGCATTTGACGTTGTGGCATCACGATTTTCCCC
CACCGCTGGACCACTGCTCACATCAAGTGGAGGAGTGGGGCAAGCTTGCT
CGGTCGGTGAGTGTGGGAATGGAGGTCGGGAAAGAGGGTTTTATTGACGA
GGGGGGGCGTGATGTGGTGAAGGGAAGGGAGAGAGACGAGGAGGACGGAA
GCGGATAGAGAGGGATTGAATGCGATTTTAATGCTTGATCAGGTAGTCAA
CTCATTATTCACGTACCACAGATTCACGAGGACACGGACTAAGAGGAGAG
GATGGTGAATTCTGGGGGGATACCTTCCCGGAAGCATGCTGAATGGAGAC
AGATGTGCGACTTATTAAACATTGCATGGAGGACAAAGTGAAGTATTGTG
TGTAGACATGGAACGTGCAAGGTATGGCTGTCATTTGGTGCTGCATGCAG
TACTTGTGTAAATACGACAAGTGGGATGAAAGAAGGGAGGGAGTGAGTGA
GGAGGGGGGATGGGGTTGAGCCGCGACAGCCTTGTCTTGTCTTATTTAAA
ATTAAAAGTACGAATCAAATATTTATTGCGGAAGCCGCATGAACGCCCTG
TTTCTTTTCTTCTTTGCTGTCCAATATGTTGCCGCCCCAATAACTGCTAC
GGTCTCTGCTTCTGAGAAAACGCCGCTCTTGAGTAT
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Coding sequence (CDS) from alignment at chr14:402684..404519+

>NO14G01240.1 ID=NO14G01240.1|Name=NO14G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr14:402684..404519+ (Nannochloropsis oceanica)
ATGAAGGCGCTGCTGGGACGGTGGCGCAAATTATTCTGCCAGACAGTGGA
ATTGGTCCCTCTTCCTCCTCCTCGTAGTCATCGTCCCTGTCATGGTTGTA
GTAGCGGTGAGGCACGCGTGTGTGAGGATGGAGGGCACACGGAAGACGCC
GGAAGCAGCGTTTTCTCGCGGAAATCGCTCACATCTCCTCCCACCCTTTT
TCGATGCTCTCACCTCACGAACCCGCTACGGTCCTTACACAGAATGGACA
ACGAGACAGTCGACCAAGGCAGCAAATGTAGCGGCAACAGCTACCGCAGT
GGGAGTCGGGGCCCGCTGCCAGCAACCGAGCCTGTGCTAGTCGCCTCCAT
CCGCGCCCCGACTCCTAACGCCTGTGTGCACGCCTTGCCGTGTTCCATCC
ATCACGACGGCCCCGCGGCCATCAACACGTACTTCATGCCTCGCAAAGCA
GCAGTAGTAATTCCAGAGGTGAAAACCCTGAAAGAATCTTCCCAAAAATC
GACAGACGAGAACCGGGTGGATGATCAAGAGAATCAAGAAGGCCAAGGTC
ATTTGTACGAGGCTCAATTTCGGGGCCGTTTTTTGAAAGGCATCCGCACG
AGCTGCCCCAAGGGCACTGTTGGCTTCGTGGTGCGAGAGAGTGTTTTGCC
TCCAGAGCTGGCCGAGAAGGCCCCGTCAGCAGCGACCAACAGGTATTGGT
CGGTGGAATCCGAGTTCCGGCATTTGACGTTGTGGCATCACGATTTTCCC
CCACCGCTGGACCACTGCTCACATCAAGTGGAGGAGTGGGGCAAGCTTGC
TCGGTCGATTCACGAGGACACGGACTAA
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Synonyms
Publications