NO14G01230, NO14G01230 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO14G01230 vs. NCBI_GenBank
Match: EWM24674.1 (rnp-1 like rna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 171.8 bits (434), Expect = 6.900e-39 Identity = 94/167 (56.29%), Postives = 107/167 (64.07%), Query Frame = 0 Query: 4 NGGGNAMGEVYDPFAQPYIPPPDPAVAVAGDHDQDDEQHSATHPWGPMNDAHSPAAAVPTSYSLTFQGAHRERSKSPPRPSGVSGATIDHKGKRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLR 171 N + GE YDPFAQPY+P PA HD D Q +P + PT R S SPPR SGVSGAT+DHKGKRLYVGQLSFDTTD E+R IF+KIG LRYC+IMTDKGT SRGF FVGFSTR AAQ+A+ WDN+E GRR+K+R Sbjct: 2 NEDTSGTGEAYDPFAQPYLPALPPA------HDAPDSQ----------APPEAPVSLDPT----------RGDSSSPPRASGVSGATMDHKGKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIR 142
BLAST of NO14G01230 vs. NCBI_GenBank
Match: OGJ42607.1 (RNA-binding protein [Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_01_FULL_39_12] >OGJ42691.1 RNA-binding protein [Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_02_FULL_39_10]) HSP 1 Score: 89.7 bits (221), Expect = 3.400e-14 Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 96 KRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEP 175 K+LYVG LS+DTT+E L A F K G + KI+TDK + S+GFGFV FST E AQ AI WD QE GR++++ A P Sbjct: 3 KKLYVGGLSYDTTEEGLNAAFAKSGTVESAKIITDKFSGRSKGFGFVEFSTDEEAQAAIQAWDGQELDGRKLRVNEARP 81
BLAST of NO14G01230 vs. NCBI_GenBank
Match: KPJ85756.1 (RNA-binding protein [Parcubacteria bacterium SG8_24]) HSP 1 Score: 84.7 bits (208), Expect = 1.100e-12 Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0 Query: 95 GKRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEPK 176 GK+LYVG LSFDT +E LR F++ G + I+TD+ T S+GFGFV ++T E AQ+AI+ +D Q+ GR +K+ A PK Sbjct: 2 GKKLYVGNLSFDTNEEGLRDYFSQAGSVESAVIITDRMTGRSKGFGFVEYATDEEAQKAIEMFDGQDLDGRNLKVNEARPK 82
BLAST of NO14G01230 vs. NCBI_GenBank
Match: PIW36588.1 (RNA-binding protein [Candidatus Kerfeldbacteria bacterium CG15_BIG_FIL_POST_REV_8_21_14_020_45_12] >PJA93350.1 RNA-binding protein [Candidatus Kerfeldbacteria bacterium CG_4_9_14_3_um_filter_45_8]) HSP 1 Score: 84.3 bits (207), Expect = 1.400e-12 Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 0 Query: 96 KRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEPK 176 K L+VG LS+DTTD+ LRA F + G + K++ D+ + SRGFGFV ++ E AQ AID WD +E GR +K+ A PK Sbjct: 3 KNLFVGSLSWDTTDDSLRAAFEQAGTVESAKVIMDRDSGRSRGFGFVEMASPEDAQAAIDMWDGKELDGREIKVNEARPK 82
BLAST of NO14G01230 vs. NCBI_GenBank
Match: XP_001736605.1 (cold-inducible RNA-binding protein [Entamoeba dispar SAW760] >EDR27150.1 cold-inducible RNA-binding protein, putative [Entamoeba dispar SAW760]) HSP 1 Score: 82.8 bits (203), Expect = 4.200e-12 Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 0 Query: 97 RLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEPK 176 RLY+G L++ TDE LRA F K G + CK++TD+ + S+GFGFV F E A++AI+ + QE +GRR+K+ ++P+ Sbjct: 3 RLYIGSLAYSVTDESLRAAFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSKPR 81
BLAST of NO14G01230 vs. NCBI_GenBank
Match: PIW74722.1 (RNA-binding protein, partial [Candidatus Portnoybacteria bacterium CG_4_8_14_3_um_filter_44_15]) HSP 1 Score: 82.0 bits (201), Expect = 7.200e-12 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 96 KRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEP 175 K+LY+G LS+DTT++ L+ F K G + ++TDK + S+GFGFV S+ E AQ+AI+ W+ +EF+GR + + A P Sbjct: 3 KKLYIGGLSYDTTEDSLKEAFAKAGTVESASVITDKMSGRSKGFGFVEMSSEEEAQKAIEMWNGKEFEGRNLTVNEARP 81
BLAST of NO14G01230 vs. NCBI_GenBank
Match: PIZ69514.1 (RNA-binding protein [Candidatus Portnoybacteria bacterium CG_4_10_14_0_2_um_filter_43_36]) HSP 1 Score: 82.0 bits (201), Expect = 7.200e-12 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 96 KRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEP 175 K+LY+G LS+DTT++ L+ F K G + ++TDK + S+GFGFV S+ E AQ+AI+ W+ +EF+GR + + A P Sbjct: 3 KKLYIGGLSYDTTEDSLKEAFAKAGTVESASVITDKMSGRSKGFGFVEMSSEEEAQKAIEMWNGKEFEGRNLTVNEARP 81
BLAST of NO14G01230 vs. NCBI_GenBank
Match: PJA63937.1 (RNA-binding protein, partial [Candidatus Portnoybacteria bacterium CG_4_9_14_3_um_filter_43_11]) HSP 1 Score: 82.0 bits (201), Expect = 7.200e-12 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 96 KRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEP 175 K+LY+G LS+DTT++ L+ F K G + ++TDK + S+GFGFV S+ E AQ+AI+ W+ +EF+GR + + A P Sbjct: 3 KKLYIGGLSYDTTEDSLKEAFAKAGTVESASVITDKMSGRSKGFGFVEMSSEEEAQKAIEMWNGKEFEGRNLTVNEARP 81
BLAST of NO14G01230 vs. NCBI_GenBank
Match: PJE59077.1 (RNA-binding protein, partial [Candidatus Portnoybacteria bacterium CG10_big_fil_rev_8_21_14_0_10_43_39]) HSP 1 Score: 82.0 bits (201), Expect = 7.200e-12 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 96 KRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEP 175 K+LY+G LS+DTT++ L+ F K G + ++TDK + S+GFGFV S+ E AQ+AI+ W+ +EF+GR + + A P Sbjct: 3 KKLYIGGLSYDTTEDSLKEAFAKAGTVESASVITDKMSGRSKGFGFVEMSSEEEAQKAIEMWNGKEFEGRNLTVNEARP 81
BLAST of NO14G01230 vs. NCBI_GenBank
Match: XP_008860765.1 (RNA recognition motif (RRM, RBD, or RNP domain) containing protein [Entamoeba nuttalli P19] >EKE36900.1 RNA recognition motif (RRM, RBD, or RNP domain) containing protein [Entamoeba nuttalli P19]) HSP 1 Score: 81.6 bits (200), Expect = 9.400e-12 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 0 Query: 97 RLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEPK 176 RLY+G L++ TDE L+A F K G + CK++TD+ + S+GFGFV F E A++AI+ + QE +GRR+K+ + P+ Sbjct: 3 RLYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSRPR 81 The following BLAST results are available for this feature:
BLAST of NO14G01230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO14G01230 ID=NO14G01230|Name=NO14G01230|organism=Nannochloropsis oceanica|type=gene|length=4103bpback to top protein sequence of NO14G01230.1 >NO14G01230.1-protein ID=NO14G01230.1-protein|Name=NO14G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bpback to top Synonyms
Publications
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