Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr14 genome chr14:400417..404519 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01230.1 vs.
Match: EWM24674.1 (rnp-1 like rna-binding protein [Nannochloropsis gaditana])
HSP 1 Score: 185.3 bits (469), Expect = 6.000e-43
Identity = 109/194 (56.19%), Postives = 124/194 (63.92%), Query Frame = 0
Query: 4 NGGGNAMGEVYDPFAQPYIPPPDPAVAVAGDHDQDDEQHSATHPWGPMNDAHSPAAAVPTSYSLTFQGAHRERSKSPPRPSGVSGATIDHKGKRLYVGQLSFDTTDEELRAIFTKIGPLRYCKIMTDKGTTNSRGFGFVGFSTREAAQEAIDRWDNQEFKGRRMKLRFAEPKAGEGDGG---GGGGGGAEREGG 195
N + GE YDPFAQPY+P PA HD D Q +P + PT R S SPPR SGVSGAT+DHKGKRLYVGQLSFDTTD E+R IF+KIG LRYC+IMTDKGT SRGF FVGFSTR AAQ+A+ WDN+E GRR+K+R AEP+AGEG+GG GG G EGG
Sbjct: 2 NEDTSGTGEAYDPFAQPYLPALPPA------HDAPDSQAPP----------EAPVSLDPT----------RGDSSSPPRASGVSGATMDHKGKRLYVGQLSFDTTDREIRDIFSKIGSLRYCRIMTDKGTNKSRGFAFVGFSTRAAAQKAMQMWDNRELNGRRLKIRLAEPRAGEGEGGADEGGVGREDRAEGG 169
The following BLAST results are available for this feature:
BLAST of NO14G01230.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 6.00e-43 / Id = 56.19 Sequence EWM24674.1
Match Name E-value Identity Description
EWM24674.1 6.000e-43 56.19 rnp-1 like rna-binding protein [Nannochloropsis ga... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO14G01230.1 ID=NO14G01230.1|Name=NO14G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=4026bp back to top protein sequence of NO14G01230.1
>NO14G01230.1-protein ID=NO14G01230.1-protein|Name=NO14G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bp back to top mRNA from alignment at chr14:400417..404519-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01230.1 ID=NO14G01230.1|Name=NO14G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=4103bp|location=Sequence derived from alignment at chr14:400417..404519- (Nannochloropsis oceanica)ATGGCCGA
GAACGGCGGAGGCAACGCAATGGGAGAGGTCTACGACCCGTTTGCCCAGC
CATACATCCCACCACCCGACCCTGCTGTCGCTGTTGCTGGGGATCATGAC
CAGGACGACGAGCAGCACTCTGCTACCCACCCGTGGGGCCCGATGAACGA
CGCTCATTCGCCCGCTGCAGCCGTGCCAACCTCCTACTCCCTCACTTTCC
AAGGCGCCCATCGCGAGCGTTCCAAGAGTCCGCCTCGGCCTAGCGGCGTG
AGCGGCGCCACGATTGACCACAAAGGCAAGCGGCTTTATGTCGGACAGCT
CTCGTTTGATACCACCGATGAGGAACTCCGCGCCATCTTCACAAAAATAG
G GTACGTCCACTCATTCAATCTATTTGCCGTTTCTTATCGACTCACTTTC
GCCTTTTACCGACCCGGCTTGATAACAGACCTTTGCGTTATTGCAAGATC
ATGACAGACAAAGGCACCACCAACTCGCGTGGGTTTGGGTTCGTCGGGTT
TTCCACCCGCGAGGCGGCGCAAGAAGCCATCGATAGATGGGACAATCAAG
AATTTAAGGGAAGACGAATGAAGCTTCGGTTTGCGGAGCCGAAGGCCGGG
GAAGGGGATGGAGGAGGTGGTGGAGGAGGTGGAGCAGAGAGGGAGGGAGG
GAGGGATAGCCGCGGGGGAAGGGATCGGGACAGGGATCGCGAGAGGGAGA
GGGAAAGGGAGAGGGATGGAAGAGGACGGGACGGAGAGAGCTATGATCGT
GAGCGTGAATATAGAGACAGGGATCGCGAGTGGGGGGGAGTGCGAGGAGT
GAGGGAGAGGTCAAGGGAAAACGATTTGATGGAGAGGGAGAGGGAGCGAG
GGAGGGAGGTGCGGCCGAGGTACTCTTGGGAAGAAGAAGAGTACTTCCGC
ACGATTGCTGAGCGAGAGGCAAGAGAGCGGGGGGGAGGGAGGGAGGGAGG
GAGGGAAAGGGGGCTGGGAAGATACCCTCCTCCTTCTTCCGCGTCCTCTT
CCGCTTATCCTCCTCTTAGTGCTCGAGGCGCCTACGCCGCGGATATGTTC
TATGCTCCTGCAGCTCGACACATCTCCCCTCCTCCTCCTTCCTCTGCTCC
TCTTACGCTTCCTGTCCCTCCTCGAGGAGGTGATGGGTGGGAGGGGCGTG
ATCGAGGACGAGGAGGAAGAGAAAGAGAGCGGGAGGTCTACGATCGCCGT
GGGGGGAATAGAGGGGAAGGAGGTGGAGGAGGGGGAGGTAGGGAAGGAAG
GCGTTATGAAGAAGAGTATTACCACCATTTGTTGAGTGCGCGAGAAGGAG
GAGGAGGTGGAGGAAGGGACGGAGGAAGAGAGAGGGGAAGAGGACGATCT
AGGTCGCGTTCTCCTCTCTCCTCCCGACGAGACCCCAACCCTGCAGCCGC
TGCTGTCGCTGCTCTTCCTCCTCCTCCACCGTCATCCCAGTTTGTTCGTG
ACCCGTACGACTACCCACCTTCCTCCCTACCGCTGCCTCCTCATTCTTCC
TATCACCACCATCCCTCCTCAACATATCCCCATGCTGCTGCTCCTGCCCT
TTACACGGCGTTCTCCTCCTCCGCCCTCGCTTCCGCCTCCTCCTCCTCCT
ACATCCTTCCACGGGACGACGATTACCGGGGGAGAGGGGGGCGATCTCGG
TCGAGGGAGAGGGGCAGGGAGGGAGGGAGGGAGGAATATAGAGGAACACG
GGGAGGATACGTTGCCCCTCTGGTGTATGACGCGTTTGACAATGGCCGCA
GGGAAGGAGGAGGAGGAGGAAGGGAGGGAGAGAGGGAGAGGGATCGGGAC
GGGAGAGGAGGAGGAGGAGAAAGAAGAGAGGAGGGGCGTTGGTCGGATGC
GAGGTATGCCGTTCCCTCCCAGGCTCTTCCTGTGTCTGCGTACGATGGAA
GAGGTGGGGGGAGGGAAGGAGGGAGGGGGAGTTTGAATGGTGGTAGGAAT
GAGCCTCAAGATCCACGCCTTCGTCGCTGA back to top Coding sequence (CDS) from alignment at chr14:400417..404519-
>NO14G01230.1 ID=NO14G01230.1|Name=NO14G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=1911bp|location=Sequence derived from alignment at chr14:400417..404519- (Nannochloropsis oceanica) back to top