NO14G01210, NO14G01210 (gene) Nannochloropsis oceanica

Overview
NameNO14G01210
Unique NameNO14G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2091
Alignment locationchr14:393233..395323 -

Link to JBrowse

Properties
Property NameValue
DescriptionPre-mRNA-splicing factor cwc2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:393233..395323 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR035979RBD_domain_sf
IPR001202WW_dom
IPR000504RRM_dom
IPR000571Znf_CCCH
IPR032297Torus
IPR001876Znf_RanBP2
Homology
BLAST of NO14G01210 vs. NCBI_GenBank
Match: OWZ16018.1 (Pre-mRNA-splicing factor cwc2 [Phytophthora megakarya])

HSP 1 Score: 441.0 bits (1133), Expect = 4.700e-120
Identity = 206/387 (53.23%), Postives = 270/387 (69.77%), Query Frame = 0
Query:   15 LTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQG-VSLQPTAFDYPERYILPVPKKARVEG 401
            +T + TLGD+GASY VYE+NW C  C  DNYA +++C RCRAAK E  + ++   + + +  H WRE +D T+ ++YYY+TET E +W+RP EMG AP A+GW+GRG AG     +Y+  N +++ RPARKQ   +    S LEGA EYNIWY KY G+HW   +G++PA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+V D+   G +HDCFGRERHA  RDDM G G+FT  SRTLYVGGI        +E E  +  QFGEWGEVE+VN + R S  FVRFR R+N EF KEAM+NQ+L   E LNV+WA DDPNPVA+EA  R++ DA + MM  +G  + +  AFDYPE+Y +P PK+ R+EG
Sbjct:   13 VTAVGTLGDVGASYAVYEKNWICDDCGHDNYARRKRCFRCRAAKVERPDVLV---VDNKARAHTWREALDPTTHKIYYYNTETNETQWERPVEMGAAPHATGWFGRGKAGVDEGDRYETLNAKFMARPARKQIEAMPTVNSQLEGAYEYNIWYDKYVGDHWNDARGKEPATTRCDLEQDAGKTKADVVSKANRYFCLHFARGMCARGAECSYYHRLPSVADETRLGMMHDCFGRERHATDRDDMAGTGNFTRNSRTLYVGGIKSTTGHALKEQEAALWKQFGEWGEVENVNVINRKSICFVRFRHRTNAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKEAGERADRDAIIAMMHARGAATTEDGAFDYPEQYQMPAPKRQRIEG 396          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: XP_009519866.1 (hypothetical protein PHYSODRAFT_484470 [Phytophthora sojae] >EGZ24578.1 hypothetical protein PHYSODRAFT_484470 [Phytophthora sojae])

HSP 1 Score: 439.9 bits (1130), Expect = 1.100e-119
Identity = 203/390 (52.05%), Postives = 274/390 (70.26%), Query Frame = 0
Query:   13 RDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQ-REVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVSL-QPTAFDYPERYILPVPKKARVEG 401
            R LT + TLGD+GA+Y VYE+NW C  C  +NYA +++C RCRA K E  + ++   + S+   HAWRE +D  S ++YYY+T+T   +W+RP EMG AP A+GW+GRG AG     +Y++ N  +L RPARKQ   +    S LEGA EYNIWY KY G+HW   +G++PA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+  D+   G +HDCFGRERHA  RDDM GVG+FT  SRTLYVGG+  A+ ++  +E E+ +  QFGEWGEVE++N + R S  FVR+R R++ EF KEAM+NQAL   E LNV+WA DDPNPVA++A  R++ DA + MMQ +G +  +  AFDYPE+Y +P  K+ R+EG
Sbjct:    9 RALTAVGTLGDVGAAYAVYEKNWVCADCSHENYARRKRCFRCRAPKVERPDALV---VDSAGDQHAWREALDPVSNKIYYYNTQTNATQWERPAEMGAAPHATGWFGRGKAGAEEGDRYERLNAVFLSRPARKQLDAMPTANSQLEGAYEYNIWYDKYVGDHWSDARGKEPATTRCHLEQDAGKTKADVVSKANRYFCVHFARGMCARGAECSYYHRLPSAADETRIGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGLKSASGREAVKEQEDALYKQFGEWGEVENINVIHRKSICFVRYRHRTSAEFAKEAMTNQALQSDEVLNVRWAFDDPNPVAKQAGERADRDAIVAMMQAKGATTGEDAAFDYPEQYQMPATKRQRIEG 395          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: ETP38326.1 (hypothetical protein F442_14024 [Phytophthora parasitica P10297])

HSP 1 Score: 438.0 bits (1125), Expect = 4.000e-119
Identity = 202/390 (51.79%), Postives = 271/390 (69.49%), Query Frame = 0
Query:   13 RDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQ-REVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVS-LQPTAFDYPERYILPVPKKARVEG 401
            R +T + TLGD+GA+Y VYE+NW C  C  +NYA +Q+C RCRA K E  + ++   + S    H WRE +D  S ++YYY+TET   +W+RP EMG AP ++GW+GRG AG     +Y+Q N +++ RPARKQ   +    S LEGA EYNIWY KY G+HW   +G+DPA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+  D+   G +HDCFGRERHA  RDDM GVG+FT  SRTLYVGG+   + ++  ++ EE +  QFGEWGEVE++N + R S  FVR+R R++ EF KEAM+NQ+L   E LNV+WA DDPNPVA++A  RS+ DA + MM+ +G S  +  AFDYPE Y +P  K+ R+EG
Sbjct:   12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALV---VDSQGGAHTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGWFGRGKAGVSEGDRYEQLNAKFMSRPARKQLDAMPTANSQLEGAYEYNIWYDKYIGDHWDDARGKDPATTRCDLERDAGKTKADVVSKTNRYFCVHFARGMCARGAECSYYHRLPSAADETRIGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGLKTTSGQEALKQQEEALWKQFGEWGEVENINVINRKSICFVRYRHRTSAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKQAAERSDRDAIVAMMKAKGASTTEDAAFDYPEHYQMPATKRQRIEG 398          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: XP_008909749.1 (hypothetical protein PPTG_14583 [Phytophthora parasitica INRA-310] >ETI40407.1 hypothetical protein F443_14182 [Phytophthora parasitica P1569] >ETK80511.1 hypothetical protein L915_13825 [Phytophthora parasitica] >ETL87209.1 hypothetical protein L917_13528 [Phytophthora parasitica] >ETM40397.1 hypothetical protein L914_13635 [Phytophthora parasitica] >ETN04812.1 hypothetical protein PPTG_14583 [Phytophthora parasitica INRA-310] >ETO69112.1 hypothetical protein F444_14203 [Phytophthora parasitica P1976])

HSP 1 Score: 437.6 bits (1124), Expect = 5.200e-119
Identity = 202/390 (51.79%), Postives = 271/390 (69.49%), Query Frame = 0
Query:   13 RDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQ-REVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVS-LQPTAFDYPERYILPVPKKARVEG 401
            R +T + TLGD+GA+Y VYE+NW C  C  +NYA +Q+C RCRA K E  + ++   + S    H WRE +D  S ++YYY+TET   +W+RP EMG AP ++GW+GRG AG     +Y+Q N +++ RPARKQ   +    S LEGA EYNIWY KY G+HW   +G+DPA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+  D+   G +HDCFGRERHA  RDDM GVG+FT  SRTLYVGG+   + ++  ++ EE +  QFGEWGEVE++N + R S  FVR+R R++ EF KEAM+NQ+L   E LNV+WA DDPNPVA++A  RS+ DA + MM+ +G S  +  AFDYPE Y +P  K+ R+EG
Sbjct:   12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALV---VDSQGGAHTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGWFGRGKAGVSEGDRYEQLNAKFMSRPARKQLDAMPTANSQLEGAYEYNIWYDKYIGDHWDDARGKDPATTRCDLERDAGKTKADIVSKANRYFCVHFARGMCARGAECSYYHRLPSAADETRIGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGLKTTSGQEALKQQEEALWKQFGEWGEVENINVINRKSICFVRYRHRTSAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKQAAERSDRDAIVAMMKAKGASTTEDAAFDYPEHYQMPATKRQRIEG 398          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: ETL33935.1 (hypothetical protein L916_13722 [Phytophthora parasitica] >ETP10229.1 hypothetical protein F441_14082 [Phytophthora parasitica CJ01A1] >KUF78826.1 Pre-mRNA-splicing factor cwc2 [Phytophthora nicotianae])

HSP 1 Score: 437.6 bits (1124), Expect = 5.200e-119
Identity = 202/390 (51.79%), Postives = 271/390 (69.49%), Query Frame = 0
Query:   13 RDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQ-REVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVS-LQPTAFDYPERYILPVPKKARVEG 401
            R +T + TLGD+GA+Y VYE+NW C  C  +NYA +Q+C RCRA K E  + ++   + S    H WRE +D  S ++YYY+TET   +W+RP EMG AP ++GW+GRG AG     +Y+Q N +++ RPARKQ   +    S LEGA EYNIWY KY G+HW   +G+DPA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+  D+   G +HDCFGRERHA  RDDM GVG+FT  SRTLYVGG+   + ++  ++ EE +  QFGEWGEVE++N + R S  FVR+R R++ EF KEAM+NQ+L   E LNV+WA DDPNPVA++A  RS+ DA + MM+ +G S  +  AFDYPE Y +P  K+ R+EG
Sbjct:   12 RQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALV---VDSQGGAHTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGWFGRGKAGVSEGDRYEQLNAKFMSRPARKQLDAMPTANSQLEGAYEYNIWYDKYIGDHWDDARGKDPATTRCDLERDAGKTKADIVSKTNRYFCVHFARGMCARGAECSYYHRLPSAADETRIGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGLKTTSGQEALKQQEEALWKQFGEWGEVENINVINRKSICFVRYRHRTSAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKQAAERSDRDAIVAMMKAKGASTTEDAAFDYPEHYQMPATKRQRIEG 398          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: XP_002907038.1 (pre-mRNA-splicing factor cwc2, putative [Phytophthora infestans T30-4] >EEY63602.1 pre-mRNA-splicing factor cwc2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 437.2 bits (1123), Expect = 6.800e-119
Identity = 203/394 (51.52%), Postives = 272/394 (69.04%), Query Frame = 0
Query:    9 DVTRRDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAA-YKDQREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQG-VSLQPTAFDYPERYILPVPKKARVEG 401
            D   R +T + TLGD+GA+Y VYE+NW C  C  +NYA +Q+C RCRA K E  + ++   + S    H WRE +D  S ++YYY+TET   +W+RP EMG AP ++GW+GRG AG     +Y+Q N +++ RPAR Q   +    S LEGA EYNIWY KY G+HW   +G+DPA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+  D+   G +HDCFGRERHA  RDDM GVG+FT  SRTLYVGG+  A+ ++  +E EE +  QFGEWGEVE++N + R S  FVR+R R++ EF KEAM+NQ+L   E LNV+WA DDPNPVA++A  RS+ DA + MM+ +G  + +  AFDYPE Y +P  K+ R+EG
Sbjct:    8 DGLSRQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALV---VDSQGDAHTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGWFGRGKAGASEGDRYEQLNAKFMARPARTQLDAMPTANSQLEGAYEYNIWYDKYIGDHWDDARGKDPATTRCNLERDAGKTKADVVSKANRYFCVHFARGMCARGAECSYYHRLPSAADETRIGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGLKTASGHEAVKEQEEALWKQFGEWGEVENINVIHRKSICFVRYRHRTSAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKQAGERSDRDAIVAMMKAKGAATTEDAAFDYPEHYQMPATKRQRIEG 398          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: XP_002908719.1 (pre-mRNA-splicing factor cwc2, putative [Phytophthora infestans T30-4] >EEY57533.1 pre-mRNA-splicing factor cwc2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 436.8 bits (1122), Expect = 8.900e-119
Identity = 203/394 (51.52%), Postives = 272/394 (69.04%), Query Frame = 0
Query:    9 DVTRRDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAA-YKDQREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQG-VSLQPTAFDYPERYILPVPKKARVEG 401
            D   R +T + TLGD+GA+Y VYE+NW C  C  +NYA +Q+C RCRA K E  + ++   + S    H WRE +D  S ++YYY+TET   +W+RP EMG AP ++GW+GRG AG     +Y+Q N +++ RPAR Q   +    S LEGA EYNIWY KY G+HW   +G+DPA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+  D+   G +HDCFGRERHA  RDDM GVG+FT  SRTLYVGG+  A+ ++  +E EE +  QFGEWGEVE++N + R S  FVR+R R++ EF KEAM+NQ+L   E LNV+WA DDPNPVA++A  RS+ DA + MM+ +G  + +  AFDYPE Y +P  K+ R+EG
Sbjct:    8 DGLSRQVTAVGTLGDVGAAYAVYEKNWICADCSHENYARRQRCFRCRAPKVERFDALV---VDSQGVAHTWREALDPASNKIYYYNTETNATQWERPAEMGAAPHSTGWFGRGKAGASEGDRYEQLNAKFMARPARTQLDAMPTANSQLEGAYEYNIWYDKYIGDHWDDARGKDPATTRCNLERDAGKTKADVVSKANRYFCVHFARGMCARGAECSYYHRLPSAADETRIGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGLKTASGHEAVKEQEEALWKQFGEWGEVENINVIQRKSICFVRYRHRTSAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKQAGERSDRDAIVAMMKAKGAATTEDAAFDYPEHYQMPATKRQRIEG 398          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: XP_008870969.1 (hypothetical protein H310_07360 [Aphanomyces invadans] >ETW00834.1 hypothetical protein H310_07360 [Aphanomyces invadans])

HSP 1 Score: 434.9 bits (1117), Expect = 3.400e-118
Identity = 204/397 (51.39%), Postives = 271/397 (68.26%), Query Frame = 0
Query:    1 MAAPRGFEDVTRRDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVSLQPTAFDYPERYILPVPKKAR 398
            M      ++   R LT +  LG++GA+YTVYE+NW C +CK +NYA + +C RCRA K +  + ++ S    S+    WRE +D ++ ++YYYH ET E +W+RP EMG AP ++GW+GRG AG   + +Y+  N +YL RPARKQ   +    + +EGANEYNIWY KY G+HW   K +DPAE RC ++TDAG TKADKI   +KFFC+HFARGGCARG  C YFHR+PT+ D+   G LHDCFGRERHA  RDDM G G+F   SRTLYVGG+     K +   E+V+ + F EWGEVE+VN V R+S AFVR+R R++ EF KEAM+NQAL G E L++KWA DDPNPVA++A  R++ DA + M++ + +S  P  F YPE Y +   KK +
Sbjct:    5 MTPTTNLDESLPRKLTAVGVLGEVGAAYTVYEKNWFCAECKHENYARRPRCLRCRAPKVQAPDALVYS---KSNEDSKWREALDPSTNKIYYYHIETQETQWERPKEMGAAPHSTGWFGRGQAGHDNSNKYEDLNTKYLARPARKQVDAMPNRNTRMEGANEYNIWYDKYIGDHWDHTKEKDPAEHRCCLETDAGHTKADKIGKANKFFCLHFARGGCARGATCNYFHRLPTMADELRLGMLHDCFGRERHATDRDDMSGTGNFMRNSRTLYVGGL-----KGKSMTEDVIMSAFAEWGEVENVNIVHRLSVAFVRYRHRTSAEFAKEAMANQALEGDEILSIKWAMDDPNPVAKQAAQRADADAVVAMLKSRNISTAPAPFQYPEGYHIQPSKKQK 393          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: XP_009826105.1 (hypothetical protein H257_03629 [Aphanomyces astaci] >ETV84413.1 hypothetical protein H257_03629 [Aphanomyces astaci])

HSP 1 Score: 433.0 bits (1112), Expect = 1.300e-117
Identity = 202/392 (51.53%), Postives = 270/392 (68.88%), Query Frame = 0
Query:    6 GFEDVTRRDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVSLQPTAFDYPERYILPVPKKAR 398
            G ++   R LT +  LG++GA+YTVYE+NW C +CK +NYA + +C RCRA K +  + ++ S     S    WRE +D ++ ++YYYH E+ E +W+RP EMG AP ++GW+GRG AG   + +Y+  N +YL RPARKQ   +    + +EGANEYNIWY KY G+HW   K +DPAE RC ++TDAG TKADKI   +KFFC+HFARGGCARG  C YFHR+PT+ D+   G LHDCFGRERHA  RDDM G G+F   SRTLYVGG+     K +   E+V+ + F EWGEVE+VN V R++ AFVR+R R++ EF KEAM NQAL G E L++KWA DDPNPVA++A  R++ DA + M++ + +S  P  F+YPE Y +   KK +
Sbjct:   10 GLDESLPRKLTAVGVLGEVGAAYTVYEKNWFCSECKHENYARRPRCLRCRAPKVQAPDALVYSKTNEGSK---WREALDPSTNKIYYYHIESQETQWERPKEMGAAPHSTGWFGRGQAGHDNSNKYEDLNTKYLARPARKQIEAMPNRNTRMEGANEYNIWYDKYIGDHWDNTKEKDPAEHRCCLETDAGHTKADKIGKANKFFCLHFARGGCARGAGCNYFHRLPTMADELRLGMLHDCFGRERHATDRDDMSGTGNFMRNSRTLYVGGL-----KSKSMTEDVIMSAFVEWGEVENVNIVHRLAVAFVRYRHRTSAEFAKEAMGNQALEGDEILSIKWAMDDPNPVAKQAAQRADADAVVAMLKSRNISTAPAPFEYPEGYHIQPSKKQK 393          
BLAST of NO14G01210 vs. NCBI_GenBank
Match: GAX92557.1 (pre-mRNA-splicing factor cwc2, putative [Pythium insidiosum])

HSP 1 Score: 433.0 bits (1112), Expect = 1.300e-117
Identity = 201/388 (51.80%), Postives = 273/388 (70.36%), Query Frame = 0
Query:   13 RDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVSLQPTAFDYPERYILPVPKKARVEG 401
            R LT + TLGD+GA+YTVYE+NW C +C+ +NYA +++C RCRA K    + ++   + S    HAWRE +D  + ++YYY+ ET   +W+RP EMG AP A+GW+GRG AG   A +Y++ N++YL RPARKQ   +    + LEGA EYNIWY KY G+HW   +GR+ A TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+PT+ D+   G +HDCFGRERHA  RDDM GVGSFT  SRTL+VGG+ K   +  ++VE  V   F EWGEVE VN + R+S  FVR+R R + EF KEAM+NQ+L   E LN++WA DDPNPVA+++  R++ DA + M+Q +GVS +  AF+YPE+Y +P  K+ R+EG
Sbjct:   27 RKLTAVGTLGDVGAAYTVYEKNWVCAECQNENYARRERCIRCRAPKVAAPDALV---VDSKGDGHAWREALDPATNKIYYYNLETNATQWERPAEMGTAPHATGWFGRGRAGFDNANKYEELNKKYLMRPARKQVDQMPTNNTRLEGAYEYNIWYDKYVGDHWSNERGREAATTRCDLELDAGKTKADVVSKANRYFCVHFARGMCARGAECSYYHRLPTMADEARIGMMHDCFGRERHATDRDDMXGVGSFTRNSRTLFVGGL-KDLQERGKQVEAAVWKHFEEWGEVESVNVIHRLSICFVRYRHRVSAEFAKEAMANQSLDNDEVLNLRWAYDDPNPVAKKSAQRADRDAIVAMVQARGVSTEDAAFNYPEQYQMPATKRQRIEG 410          
The following BLAST results are available for this feature:
BLAST of NO14G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OWZ16018.14.700e-12053.23Pre-mRNA-splicing factor cwc2 [Phytophthora megaka... [more]
XP_009519866.11.100e-11952.05hypothetical protein PHYSODRAFT_484470 [Phytophtho... [more]
ETP38326.14.000e-11951.79hypothetical protein F442_14024 [Phytophthora para... [more]
XP_008909749.15.200e-11951.79hypothetical protein PPTG_14583 [Phytophthora para... [more]
ETL33935.15.200e-11951.79hypothetical protein L916_13722 [Phytophthora para... [more]
XP_002907038.16.800e-11951.52pre-mRNA-splicing factor cwc2, putative [Phytophth... [more]
XP_002908719.18.900e-11951.52pre-mRNA-splicing factor cwc2, putative [Phytophth... [more]
XP_008870969.13.400e-11851.39hypothetical protein H310_07360 [Aphanomyces invad... [more]
XP_009826105.11.300e-11751.53hypothetical protein H257_03629 [Aphanomyces astac... [more]
GAX92557.11.300e-11751.80pre-mRNA-splicing factor cwc2, putative [Pythium i... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002317NSK002317Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01210.2NO14G01210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G01210.1NO14G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589995gene_5688Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100839g2gene5796Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01210.2NO14G01210.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G01210.1NO14G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01210 ID=NO14G01210|Name=NO14G01210|organism=Nannochloropsis oceanica|type=gene|length=2091bp
CATGGACAGGGCTTACTATTTCATCGTGTCTTGCAGTCTAGCGGGGGCCT
TTGGGCTCGACATTGATTGTTCCGGCTTCTACGTCCCACTATCCTACTTC
CTCTCATGGCGGCACCACGCGGCTTTGAGGACGTGACACGGCGGGATCTT
ACTGGTATTGCCACACTTGGGTATGTATCTACGTCTGCATTTGTATATTA
ATTATTTGAACGGGTCGCATGTGTCGCTGGCCGGCGTGCATTTATCCCCT
TTCTTCGCGCTTGCGCTCCACCACCCTGTACTTGCCGCCCAGCATTCCAA
CAAGAATACACCGCCCGAACGCCCTTCAATTATGTGTGCCTGCTTCGATA
CTGTCATCATTCCTTTCCTTTCCTCCCGTTCCCCCTCTGTCCATCGACTC
GAGTTTCCCATTTCCTACCCCACAACCACTCCCAACAGCGACCTCGGTGC
CTCTTACACCGTCTACGAACGCAACTGGGCGTGCCCGAAATGCAAATTCG
ACAACTATGCGTCCAAGCAAAAATGTAACCGCTGTCGGGCCGCTAAACCC
GAAGGCACCGAGCACATCCTTCCTTCCTCCCTCCCTTCCTCCTCCTCTGT
CCACGCCTGGCGGGAGACCGTGGACGTGACGTCACAACAACTGTACTACT
ACCACACCGAAACGGGAGAGGTCCGTTGGGATCGCCCTCCAGAGATGGGA
CAGGCGCCCATGGCCTCAGGATGGTACGGTCGAGGTGCCGCTGGAGGAAG
GGCTGCCCAACAGTATCAGCAGCAGAACGAGGAGTACCTCAAGAGGCCGG
CGAGGAAACAAAAGGCGTTTATAGAGGCAGGACGATCCGTGCTGGAGGGG
GCAAATGAGTACAACATCTGGTACGGAAAATACACGGGGGAGCACTGGAG
GCAGGGCAAGGGAAGAGACCCAGCTGAAACTAGGTGTGTGGTCAAGACAG
ACGCGGGATGGACCAAGGCGGATAAGATTGATAGTAAATCCAAGTTCTTC
TGCATCCATTTCGCCCGCGGTGGCTGTGCACGAGGGCACGAATGCCAATA
CTTCCATCGGATCCCGACGGTGGACGATGATAAGACGGCGGGGGAGTTGC
ATGATTGTTTCGGGAGGGAGCGACACGCGGGACACAGGGACGACATGGAC
GGCGTGGGTTCCTTCACCCACCCATCACGCACGCTGTATGTGGGGGGGAT
TGTGAAAGCGGCGTACAAGGACCAAAGGGAGGTAGAGGAGGTGGTAAGGA
CGCAGTTCGGGGAGTGGGGGGAGGTGGAGCACGTGAATTTCGTGCCTCGG
ATCTCGGCGGCTTTCGTCAGgtaagggaaggagggagggaggaaagtcgt
gtcagcaagcaagagttacattccctccttccctccttccctccctcccc
ttcctagGTTTCGCCTTCGCAGCAATTGCGAATTCTGCAAGGAAGCAATG
AGCAATCAAGCATTACTCGGAAAAGAAACGCTGAATGTTAAGTGGGCCTC
TGACGACCCCAACCCCGTCGCGCAAGAAGCAGTCGCTCGTTCCAACCTCG
ACGCGGCCATGCTGATGATGCAGCAGCAAGGTGTGAGCTTACAACCGACT
GCCTTTGATTACCCGGAGAGGTACATTCTGCCGGTGCCGAAAAAGGCCAG
GGTTGAGGGAGGGGGGGAGGGAGGGGGGGGGGCGGGATGGCGTACCCTGA
TACGGATGGGCAGTATGAAGGAAGGGCGGGAGAATGTGAGGGAAGCGAGG
AGTGGAAGGCGGTGTTCGATCCAAGgtatggtgcgtattactatatgcat
gtcaaaacgggggaggtgacgtggacgaagccggaggggacgagggagca
agggaaggaaggcgtgacagaaacgatgcgtggtgatgcggacgtcattt
ctcctcctcctcctgccgtagTCGATAATGTTCTTGTTACTGCTGTGGAA
AAGGAGGGGATGGGCGAAGAGGGAGGGCTAGATGGAGATAGAGATAGAGT
TGGTGGGGGAAACGAGGTAGGAAGCCAGGAGGAGAAGGAATCAGGAGCAC
CTCGACCACCAGCGCCATCAGCACTGGAAGAAAACAAATGA
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protein sequence of NO14G01210.2

>NO14G01210.2-protein ID=NO14G01210.2-protein|Name=NO14G01210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MYLRLHLYINYLNGSHVSLAGVHLSPFFALALHHPVLAAQHSNKNTPPER
PSIMCACFDTVIIPFLSSRSPSVHRLEFPISYPTTTPNSDLGASYTVYER
NWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETV
DVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQ
QNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDP
AETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTV
DDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKD
QREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQ
ALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVSLQPTAFD
YPERYILPVPKKARVEGGGEGGGGAGWRTLIRMGSMKEGRENVREARSGR
RCSIQVDNVLVTAVEKEGMGEEGGLDGDRDRVGGGNEVGSQEEKESGAPR
PPAPSALEENK*
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protein sequence of NO14G01210.1

>NO14G01210.1-protein ID=NO14G01210.1-protein|Name=NO14G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MAAPRGFEDVTRRDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQK
CNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEV
RWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFI
EAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKAD
KIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRER
HAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGE
VEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDP
NPVAQEAVARSNLDAAMLMMQQQGVSLQPTAFDYPERYILPVPKKARVEG
GGEGGGGAGWRTLIRMGSMKEGRENVREARSGRRCSIQVDNVLVTAVEKE
GMGEEGGLDGDRDRVGGGNEVGSQEEKESGAPRPPAPSALEENK*
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Synonyms
Publications