NO14G01210.1, NO14G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01210.1
Unique NameNO14G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr14:393233..395323 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:393233..395323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01210.1 vs.
Match: OWZ16018.1 (Pre-mRNA-splicing factor cwc2 [Phytophthora megakarya])

HSP 1 Score: 441.0 bits (1133), Expect = 4.700e-120
Identity = 206/387 (53.23%), Postives = 270/387 (69.77%), Query Frame = 0 
Query:   15 LTGIATLGDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQG-VSLQPTAFDYPERYILPVPKKARVEG 401
            +T + TLGD+GASY VYE+NW C  C  DNYA +++C RCRAAK E  + ++   + + +  H WRE +D T+ ++YYY+TET E +W+RP EMG AP A+GW+GRG AG     +Y+  N +++ RPARKQ   +    S LEGA EYNIWY KY G+HW   +G++PA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+V D+   G +HDCFGRERHA  RDDM G G+FT  SRTLYVGGI        +E E  +  QFGEWGEVE+VN + R S  FVRFR R+N EF KEAM+NQ+L   E LNV+WA DDPNPVA+EA  R++ DA + MM  +G  + +  AFDYPE+Y +P PK+ R+EG
Sbjct:   13 VTAVGTLGDVGASYAVYEKNWICDDCGHDNYARRKRCFRCRAAKVERPDVLV---VDNKARAHTWREALDPTTHKIYYYNTETNETQWERPVEMGAAPHATGWFGRGKAGVDEGDRYETLNAKFMARPARKQIEAMPTVNSQLEGAYEYNIWYDKYVGDHWNDARGKEPATTRCDLEQDAGKTKADVVSKANRYFCLHFARGMCARGAECSYYHRLPSVADETRLGMMHDCFGRERHATDRDDMAGTGNFTRNSRTLYVGGIKSTTGHALKEQEAALWKQFGEWGEVENVNVINRKSICFVRFRHRTNAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKEAGERADRDAIIAMMHARGAATTEDGAFDYPEQYQMPAPKRQRIEG 396
The following BLAST results are available for this feature:
BLAST of NO14G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OWZ16018.14.700e-12053.23Pre-mRNA-splicing factor cwc2 [Phytophthora megaka... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01210NO14G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01210.1NO14G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01210.1.cds1NO14G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01210.1.cds2NO14G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01210.1.cds3NO14G01210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01210.1.cds4NO14G01210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01210.1 ID=NO14G01210.1|Name=NO14G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
CATGGACAGGGCTTACTATTTCATCGTGTCTTGCAGTCTAGCGGGGGCCT
TTGGGCTCGACATTGATTGTTCCGGCTTCTACGTCCCACTATCCTACTTC
CTCTCATGGCGGCACCACGCGGCTTTGAGGACGTGACACGGCGGGATCTT
ACTGGTATTGCCACACTTGGCGACCTCGGTGCCTCTTACACCGTCTACGA
ACGCAACTGGGCGTGCCCGAAATGCAAATTCGACAACTATGCGTCCAAGC
AAAAATGTAACCGCTGTCGGGCCGCTAAACCCGAAGGCACCGAGCACATC
CTTCCTTCCTCCCTCCCTTCCTCCTCCTCTGTCCACGCCTGGCGGGAGAC
CGTGGACGTGACGTCACAACAACTGTACTACTACCACACCGAAACGGGAG
AGGTCCGTTGGGATCGCCCTCCAGAGATGGGACAGGCGCCCATGGCCTCA
GGATGGTACGGTCGAGGTGCCGCTGGAGGAAGGGCTGCCCAACAGTATCA
GCAGCAGAACGAGGAGTACCTCAAGAGGCCGGCGAGGAAACAAAAGGCGT
TTATAGAGGCAGGACGATCCGTGCTGGAGGGGGCAAATGAGTACAACATC
TGGTACGGAAAATACACGGGGGAGCACTGGAGGCAGGGCAAGGGAAGAGA
CCCAGCTGAAACTAGGTGTGTGGTCAAGACAGACGCGGGATGGACCAAGG
CGGATAAGATTGATAGTAAATCCAAGTTCTTCTGCATCCATTTCGCCCGC
GGTGGCTGTGCACGAGGGCACGAATGCCAATACTTCCATCGGATCCCGAC
GGTGGACGATGATAAGACGGCGGGGGAGTTGCATGATTGTTTCGGGAGGG
AGCGACACGCGGGACACAGGGACGACATGGACGGCGTGGGTTCCTTCACC
CACCCATCACGCACGCTGTATGTGGGGGGGATTGTGAAAGCGGCGTACAA
GGACCAAAGGGAGGTAGAGGAGGTGGTAAGGACGCAGTTCGGGGAGTGGG
GGGAGGTGGAGCACGTGAATTTCGTGCCTCGGATCTCGGCGGCTTTCGTC
AGGTTTCGCCTTCGCAGCAATTGCGAATTCTGCAAGGAAGCAATGAGCAA
TCAAGCATTACTCGGAAAAGAAACGCTGAATGTTAAGTGGGCCTCTGACG
ACCCCAACCCCGTCGCGCAAGAAGCAGTCGCTCGTTCCAACCTCGACGCG
GCCATGCTGATGATGCAGCAGCAAGGTGTGAGCTTACAACCGACTGCCTT
TGATTACCCGGAGAGGTACATTCTGCCGGTGCCGAAAAAGGCCAGGGTTG
AGGGAGGGGGGGAGGGAGGGGGGGGGGCGGGATGGCGTACCCTGATACGG
ATGGGCAGTATGAAGGAAGGGCGGGAGAATGTGAGGGAAGCGAGGAGTGG
AAGGCGGTGTTCGATCCAAGTCGATAATGTTCTTGTTACTGCTGTGGAAA
AGGAGGGGATGGGCGAAGAGGGAGGGCTAGATGGAGATAGAGATAGAGTT
GGTGGGGGAAACGAGGTAGGAAGCCAGGAGGAGAAGGAATCAGGAGCACC
TCGACCACCAGCGCCATCAGCACTGGAAGAAAACAAATGA
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protein sequence of NO14G01210.1

>NO14G01210.1-protein ID=NO14G01210.1-protein|Name=NO14G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MAAPRGFEDVTRRDLTGIATLGDLGASYTVYERNWACPKCKFDNYASKQK
CNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEV
RWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFI
EAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKAD
KIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRER
HAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGE
VEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDP
NPVAQEAVARSNLDAAMLMMQQQGVSLQPTAFDYPERYILPVPKKARVEG
GGEGGGGAGWRTLIRMGSMKEGRENVREARSGRRCSIQVDNVLVTAVEKE
GMGEEGGLDGDRDRVGGGNEVGSQEEKESGAPRPPAPSALEENK*
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mRNA from alignment at chr14:393233..395323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01210.1 ID=NO14G01210.1|Name=NO14G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at chr14:393233..395323- (Nannochloropsis oceanica)
CATGGACAGGGCTTACTATTTCATCGTGTCTTGCAGTCTAGCGGGGGCCT
TTGGGCTCGACATTGATTGTTCCGGCTTCTACGTCCCACTATCCTACTTC
CTCTCATGGCGGCACCACGCGGCTTTGAGGACGTGACACGGCGGGATCTT
ACTGGTATTGCCACACTTGGGTATGTATCTACGTCTGCATTTGTATATTA
ATTATTTGAACGGGTCGCATGTGTCGCTGGCCGGCGTGCATTTATCCCCT
TTCTTCGCGCTTGCGCTCCACCACCCTGTACTTGCCGCCCAGCATTCCAA
CAAGAATACACCGCCCGAACGCCCTTCAATTATGTGTGCCTGCTTCGATA
CTGTCATCATTCCTTTCCTTTCCTCCCGTTCCCCCTCTGTCCATCGACTC
GAGTTTCCCATTTCCTACCCCACAACCACTCCCAACAGCGACCTCGGTGC
CTCTTACACCGTCTACGAACGCAACTGGGCGTGCCCGAAATGCAAATTCG
ACAACTATGCGTCCAAGCAAAAATGTAACCGCTGTCGGGCCGCTAAACCC
GAAGGCACCGAGCACATCCTTCCTTCCTCCCTCCCTTCCTCCTCCTCTGT
CCACGCCTGGCGGGAGACCGTGGACGTGACGTCACAACAACTGTACTACT
ACCACACCGAAACGGGAGAGGTCCGTTGGGATCGCCCTCCAGAGATGGGA
CAGGCGCCCATGGCCTCAGGATGGTACGGTCGAGGTGCCGCTGGAGGAAG
GGCTGCCCAACAGTATCAGCAGCAGAACGAGGAGTACCTCAAGAGGCCGG
CGAGGAAACAAAAGGCGTTTATAGAGGCAGGACGATCCGTGCTGGAGGGG
GCAAATGAGTACAACATCTGGTACGGAAAATACACGGGGGAGCACTGGAG
GCAGGGCAAGGGAAGAGACCCAGCTGAAACTAGGTGTGTGGTCAAGACAG
ACGCGGGATGGACCAAGGCGGATAAGATTGATAGTAAATCCAAGTTCTTC
TGCATCCATTTCGCCCGCGGTGGCTGTGCACGAGGGCACGAATGCCAATA
CTTCCATCGGATCCCGACGGTGGACGATGATAAGACGGCGGGGGAGTTGC
ATGATTGTTTCGGGAGGGAGCGACACGCGGGACACAGGGACGACATGGAC
GGCGTGGGTTCCTTCACCCACCCATCACGCACGCTGTATGTGGGGGGGAT
TGTGAAAGCGGCGTACAAGGACCAAAGGGAGGTAGAGGAGGTGGTAAGGA
CGCAGTTCGGGGAGTGGGGGGAGGTGGAGCACGTGAATTTCGTGCCTCGG
ATCTCGGCGGCTTTCGTCAGGTAAGGGAAGGAGGGAGGGAGGAAAGTCGT
GTCAGCAAGCAAGAGTTACATTCCCTCCTTCCCTCCTTCCCTCCCTCCCC
TTCCTAGGTTTCGCCTTCGCAGCAATTGCGAATTCTGCAAGGAAGCAATG
AGCAATCAAGCATTACTCGGAAAAGAAACGCTGAATGTTAAGTGGGCCTC
TGACGACCCCAACCCCGTCGCGCAAGAAGCAGTCGCTCGTTCCAACCTCG
ACGCGGCCATGCTGATGATGCAGCAGCAAGGTGTGAGCTTACAACCGACT
GCCTTTGATTACCCGGAGAGGTACATTCTGCCGGTGCCGAAAAAGGCCAG
GGTTGAGGGAGGGGGGGAGGGAGGGGGGGGGGCGGGATGGCGTACCCTGA
TACGGATGGGCAGTATGAAGGAAGGGCGGGAGAATGTGAGGGAAGCGAGG
AGTGGAAGGCGGTGTTCGATCCAAGGTATGGTGCGTATTACTATATGCAT
GTCAAAACGGGGGAGGTGACGTGGACGAAGCCGGAGGGGACGAGGGAGCA
AGGGAAGGAAGGCGTGACAGAAACGATGCGTGGTGATGCGGACGTCATTT
CTCCTCCTCCTCCTGCCGTAGTCGATAATGTTCTTGTTACTGCTGTGGAA
AAGGAGGGGATGGGCGAAGAGGGAGGGCTAGATGGAGATAGAGATAGAGT
TGGTGGGGGAAACGAGGTAGGAAGCCAGGAGGAGAAGGAATCAGGAGCAC
CTCGACCACCAGCGCCATCAGCACTGGAAGAAAACAAATGA
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Coding sequence (CDS) from alignment at chr14:393233..395323-

>NO14G01210.1 ID=NO14G01210.1|Name=NO14G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr14:393233..395323- (Nannochloropsis oceanica)
ATGGCGGCACCACGCGGCTTTGAGGACGTGACACGGCGGGATCTTACTGG
TATTGCCACACTTGGCGACCTCGGTGCCTCTTACACCGTCTACGAACGCA
ACTGGGCGTGCCCGAAATGCAAATTCGACAACTATGCGTCCAAGCAAAAA
TGTAACCGCTGTCGGGCCGCTAAACCCGAAGGCACCGAGCACATCCTTCC
TTCCTCCCTCCCTTCCTCCTCCTCTGTCCACGCCTGGCGGGAGACCGTGG
ACGTGACGTCACAACAACTGTACTACTACCACACCGAAACGGGAGAGGTC
CGTTGGGATCGCCCTCCAGAGATGGGACAGGCGCCCATGGCCTCAGGATG
GTACGGTCGAGGTGCCGCTGGAGGAAGGGCTGCCCAACAGTATCAGCAGC
AGAACGAGGAGTACCTCAAGAGGCCGGCGAGGAAACAAAAGGCGTTTATA
GAGGCAGGACGATCCGTGCTGGAGGGGGCAAATGAGTACAACATCTGGTA
CGGAAAATACACGGGGGAGCACTGGAGGCAGGGCAAGGGAAGAGACCCAG
CTGAAACTAGGTGTGTGGTCAAGACAGACGCGGGATGGACCAAGGCGGAT
AAGATTGATAGTAAATCCAAGTTCTTCTGCATCCATTTCGCCCGCGGTGG
CTGTGCACGAGGGCACGAATGCCAATACTTCCATCGGATCCCGACGGTGG
ACGATGATAAGACGGCGGGGGAGTTGCATGATTGTTTCGGGAGGGAGCGA
CACGCGGGACACAGGGACGACATGGACGGCGTGGGTTCCTTCACCCACCC
ATCACGCACGCTGTATGTGGGGGGGATTGTGAAAGCGGCGTACAAGGACC
AAAGGGAGGTAGAGGAGGTGGTAAGGACGCAGTTCGGGGAGTGGGGGGAG
GTGGAGCACGTGAATTTCGTGCCTCGGATCTCGGCGGCTTTCGTCAGGTT
TCGCCTTCGCAGCAATTGCGAATTCTGCAAGGAAGCAATGAGCAATCAAG
CATTACTCGGAAAAGAAACGCTGAATGTTAAGTGGGCCTCTGACGACCCC
AACCCCGTCGCGCAAGAAGCAGTCGCTCGTTCCAACCTCGACGCGGCCAT
GCTGATGATGCAGCAGCAAGGTGTGAGCTTACAACCGACTGCCTTTGATT
ACCCGGAGAGGTACATTCTGCCGGTGCCGAAAAAGGCCAGGGTTGAGGGA
GGGGGGGAGGGAGGGGGGGGGGCGGGATGGCGTACCCTGATACGGATGGG
CAGTATGAAGGAAGGGCGGGAGAATGTGAGGGAAGCGAGGAGTGGAAGGC
GGTGTTCGATCCAAGTCGATAATGTTCTTGTTACTGCTGTGGAAAAGGAG
GGGATGGGCGAAGAGGGAGGGCTAGATGGAGATAGAGATAGAGTTGGTGG
GGGAAACGAGGTAGGAAGCCAGGAGGAGAAGGAATCAGGAGCACCTCGAC
CACCAGCGCCATCAGCACTGGAAGAAAACAAATGA
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Synonyms
Publications