NO14G01170, NO14G01170 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO14G01170 vs. NCBI_GenBank
Match: EWM24702.1 (photosystem ii 12 kda extrinsic protein [Nannochloropsis gaditana]) HSP 1 Score: 281.6 bits (719), Expect = 3.000e-72 Identity = 138/170 (81.18%), Postives = 152/170 (89.41%), Query Frame = 0 Query: 139 FLSFLSRPPNTGVPPYTITMKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 FL P T P + TMK IIALLLAAPALAFMPPTPAPQR +V+MSASRDWKKD+AKAAFV +PM+APLVAGAKIDYEGVG+LGG +KIDVNNANVRVY+RFPGMYPTVAGKIVSHGPYKSVADLYSISGLTE EK+++KKYESKF+TL+PAPEY IDRINNGLYR Sbjct: 48 FLPMHYPPSTTSRPHLSHTMKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
BLAST of NO14G01170 vs. NCBI_GenBank
Match: EJK69097.1 (hypothetical protein THAOC_09685 [Thalassiosira oceanica]) HSP 1 Score: 162.5 bits (410), Expect = 2.000e-36 Identity = 85/151 (56.29%), Postives = 100/151 (66.23%), Query Frame = 0 Query: 158 MKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 MK I L + A AF P A AQ ++A ++ AA P A A++DYE V +LGGG +DVNNANVR Y R PGMYP+ AGKIV+HGPYKSVAD+Y+I GLT AEK V+KKYESKFV DPA EY IDR+NNGLYR Sbjct: 1 MKTAIIATLISTAAAFAP--NAQPAAQTALNAEAADRRSFLGAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGMYPSAAGKIVTHGPYKSVADVYNIPGLTSAEKEVIKKYESKFVAKDPAAEYVIDRVNNGLYR 149
BLAST of NO14G01170 vs. NCBI_GenBank
Match: BAG85212.1 (extrinsic protein in photosystem II [Chaetoceros gracilis]) HSP 1 Score: 157.1 bits (396), Expect = 8.500e-35 Identity = 78/151 (51.66%), Postives = 94/151 (62.25%), Query Frame = 0 Query: 158 MKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 MK I L A A AF P P + +++ A A + AP+ A A IDYE +G+LGG +D+NNANVR Y + PGMYPTVAGKIVSHGPY VADLY I GL+ AE V+KKYES+ P+P+Y IDRINNGLYR Sbjct: 1 MKIAILATLFASAAAFAPSNPTTSATSTTALQAESGRREFFGALTAAAALAAPVAANAVIDYENIGYLGGSSIVDINNANVRAYLKMPGMYPTVAGKIVSHGPYSGVADLYKIPGLSSAEADVIKKYESRLTAKTPSPDYVIDRINNGLYR 151
BLAST of NO14G01170 vs. NCBI_GenBank
Match: XP_002288025.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95468.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 154.8 bits (390), Expect = 4.200e-34 Identity = 83/151 (54.97%), Postives = 97/151 (64.24%), Query Frame = 0 Query: 158 MKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 MK + L + A AF P A AQ ++A D + + AA L PL A A +DYE V LGG +D+NNANVR Y R PGMYP AGKIV+HGPYKSVAD+Y+I GLT AEK V+KKYES+F APEY IDRINNGLYR Sbjct: 1 MKLAVIAALVSSAAAFAP--NAQPAAQTALNAESDRRSFLGAAAAFGAAAL-PLAANAVVDYENVALLGGSQTVDLNNANVRAYLRMPGMYPAAAGKIVTHGPYKSVADVYNIPGLTNAEKEVIKKYESRFTAKAVAPEYAIDRINNGLYR 148
BLAST of NO14G01170 vs. NCBI_GenBank
Match: GAX10873.1 (photosystem II PsbU protein [Fistulifera solaris]) HSP 1 Score: 154.8 bits (390), Expect = 4.200e-34 Identity = 80/151 (52.98%), Postives = 105/151 (69.54%), Query Frame = 0 Query: 158 MKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 MK + L A AF+ TP+ +RA V + A R ++ A A + AP+ A A DY+ VG+LGG + +DVNNANVRVY + PG+YPTVAGKI ++GPYKSVADLY+I GL+ EK ++KKYES+F L+P+ +Y IDRINNGLYR Sbjct: 1 MKLALFAALFTTAAAFV--TPSAERASVALQAER---REFLSALAGAAALAAPMAANAVRDYDNVGYLGGSEIVDVNNANVRVYLKMPGLYPTVAGKIATNGPYKSVADLYNIPGLSGKEKELIKKYESRFTALEPSADYVIDRINNGLYR 146
BLAST of NO14G01170 vs. NCBI_GenBank
Match: GAX21791.1 (photosystem II PsbU protein [Fistulifera solaris]) HSP 1 Score: 151.8 bits (382), Expect = 3.600e-33 Identity = 79/151 (52.32%), Postives = 103/151 (68.21%), Query Frame = 0 Query: 158 MKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 MK I L A AF+ TP+ +R V + A R ++ A A + AP+ A A DY+ VG+LGG + +DVNNANVRVY + PG+YPTVAGKI ++GPYKSV DLY+I GL+ EK ++KKYES+F L+P+ +Y IDRINNGLYR Sbjct: 1 MKLAIFAALFTAASAFV--TPSAERPSVALQAER---REFLSALAGAAALAAPMAANAVRDYDNVGYLGGSEIVDVNNANVRVYLKMPGLYPTVAGKIATNGPYKSVGDLYNIPGLSGKEKELIKKYESRFTALEPSADYVIDRINNGLYR 146
BLAST of NO14G01170 vs. NCBI_GenBank
Match: OEU19732.1 (photosystem II 12 kDa extrinsic protein, chloroplastic [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 147.9 bits (372), Expect = 5.200e-32 Identity = 76/150 (50.67%), Postives = 105/150 (70.00%), Query Frame = 0 Query: 160 CIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKA-AFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 C++ALL+++ A AF P T + + + R++ A A A L AP A A DYE +G+LGGG+ +D+NNANVRVY + PG+YPTVAGK+ SHGPYK+V+D+Y+I GL++ EK +MKKYE++F P+ +Y IDRINNGLYR Sbjct: 5 CVLALLVSSVA-AFAPNTSVSRPVTELAAERREFMSQAAAAVAGAGLFAFAP-AANAIRDYEAIGYLGGGNIVDLNNANVRVYLKMPGLYPTVAGKLASHGPYKTVSDIYNIEGLSQPEKDLMKKYENRFTVTPPSADYVIDRINNGLYR 152
BLAST of NO14G01170 vs. NCBI_GenBank
Match: Q84XB6.1 (RecName: Full=Photosystem II 12 kDa extrinsic protein, chloroplastic; AltName: Full=PS II complex 12 kDa extrinsic protein; AltName: Full=PSII-U; Flags: Precursor >AAO43195.1 photosystem II 12 kDa extrinsic protein precursor [Phaeodactylum tricornutum]) HSP 1 Score: 144.8 bits (364), Expect = 4.400e-31 Identity = 74/151 (49.01%), Postives = 98/151 (64.90%), Query Frame = 0 Query: 158 MKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 MK + +L + AF+ P + A ++A R ++ AA VA + PL A A DYE VG+LGG + +DVNNANVRVY + PG+YPT+AGKI S+GPY +V DLY+I GL+ EK ++KKYES+F P +Y IDR NNGLYR Sbjct: 1 MKLAVFAVLISTVAAFVAPNGVQRAATTELNAER---REFLSAAAVAAGLAFPLTANAIRDYENVGYLGGSEIVDVNNANVRVYLKMPGLYPTLAGKIASNGPYNAVGDLYNIPGLSGKEKELLKKYESRFTAQKPQADYVIDRFNNGLYR 148
BLAST of NO14G01170 vs. NCBI_GenBank
Match: XP_002178366.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50031.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 143.7 bits (361), Expect = 9.800e-31 Identity = 73/151 (48.34%), Postives = 98/151 (64.90%), Query Frame = 0 Query: 158 MKCIIALLLAAPALAFMPPTPAPQRAQVVMSASRDWKKDIAKAAFVALPMLAPLVAGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 MK + +L + +F+ P + A ++A R ++ AA VA + PL A A DYE VG+LGG + +DVNNANVRVY + PG+YPT+AGKI S+GPY +V DLY+I GL+ EK ++KKYES+F P +Y IDR NNGLYR Sbjct: 1 MKLAVFAVLISTVASFVAPNGVQRAATTELNAER---REFLSAAAVAAGLAFPLTANAIRDYENVGYLGGSEIVDVNNANVRVYLKMPGLYPTLAGKIASNGPYNAVGDLYNIPGLSGKEKELLKKYESRFTAQKPQADYVIDRFNNGLYR 148
BLAST of NO14G01170 vs. NCBI_GenBank
Match: XP_005706436.1 (photosystem II PsbU protein [Galdieria sulphuraria] >ADD54621.1 chloroplast photosystem II U precursor [Galdieria sulphuraria] >EME29916.1 photosystem II PsbU protein [Galdieria sulphuraria]) HSP 1 Score: 143.7 bits (361), Expect = 9.800e-31 Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 0 Query: 213 AGAKIDYEGVGFLGGGDKIDVNNANVRVYARFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEAEKAVMKKYESKFVTLDPAPEYQIDRINNGLYR 309 A A +Y GVG+LGGGDK+D+NNAN+R Y +FPG YP +A IV +GPYKSV DLY+I GLTE ++ ++KKYE +FV LDPAPEY++D+ NNGLYR Sbjct: 79 ASASREYAGVGYLGGGDKVDINNANIRAYTKFPGFYPKLASLIVKNGPYKSVNDLYNIKGLTEDQRELIKKYEDRFVALDPAPEYEVDKFNNGLYR 174 The following BLAST results are available for this feature:
BLAST of NO14G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO14G01170 ID=NO14G01170|Name=NO14G01170|organism=Nannochloropsis oceanica|type=gene|length=2817bpback to top protein sequence of NO14G01170.1 >NO14G01170.1-protein ID=NO14G01170.1-protein|Name=NO14G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bpback to top Synonyms
Publications
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