NO14G00790, NO14G00790 (gene) Nannochloropsis oceanica

Overview
NameNO14G00790
Unique NameNO14G00790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4441
Alignment locationchr14:281441..285881 -

Link to JBrowse

Properties
Property NameValue
DescriptionTubulin beta chain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:281441..285881 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0016787hydrolase activity
GO:0005198structural molecule activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
GO:0005856cytoskeleton
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR008280Tub_FtsZ_C
IPR036525Tubulin/FtsZ_GTPase_sf
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR000217Tubulin
IPR002453Beta_tubulin
Homology
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BLAST of NO14G00790 vs. NCBI_GenBank
Match: EWM24719.1 (beta tubulin [Nannochloropsis gaditana])

HSP 1 Score: 827.8 bits (2137), Expect = 1.600e-236
Identity = 389/448 (86.83%), Postives = 423/448 (94.42%), Query Frame = 0 
Query:    1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEEEMDEDIYGHGQLLDE 449
            MREILH+QAGQCGNQIGCKFWEVIS EHGIQPDGSYKG+S TQLERIDVYY EAN GRYVPRALL+DLEPGTMDSARSS YGGLFRPDNF++GQSGAGNNWAKGHYTEGAEL+DTVLDALR+EVE+CDCLQGFQMTHSLGGGTGSG+GTLL+SK++EE+PDRILSSYA+IPSAKVSDTVVEPYNAMLSVHQLVENADQCF LDNEALY+ICLRTLKL NPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPL+   +Q Y  L+V ELTQQAF+AKNMMCA+DPRHGRYLTCACMFRG+ISA +MDVQMSQ V+KNS+ FVEWIPNNIKASIC++PP G+KMSATFVGNNTAIQ VWKRI +QFGLMF+RKAFLHWYTGEGMEELEFTEA+SNLQDLI+EYQQYQDA V+EEE++ DIYGHG  L E
Sbjct:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDAMVDEEEIEADIYGHGYTLQE 448
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BLAST of NO14G00790 vs. NCBI_GenBank
Match: XP_005852742.1 (tubulin beta [Nannochloropsis gaditana CCMP526] >EKU23091.1 tubulin beta [Nannochloropsis gaditana CCMP526] >EWM28533.1 beta-tubulin [Nannochloropsis gaditana])

HSP 1 Score: 765.0 bits (1974), Expect = 1.300e-217
Identity = 352/439 (80.18%), Postives = 401/439 (91.34%), Query Frame = 0 
Query:    1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEE-EMDED 439
            MREI+H+QAGQCGNQIG KFWEVI++EHG+ P G+Y GDSD QLERI+VY+ EA GGRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CDCLQGFQ+THS+GGGTG+GMGTLL+SKIREEYPDR++S+Y+IIPS KVSDTVVEPYNA LSVHQLVENADQCF LDNEALYDIC RTLKL+ PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPL++ G+QQY AL+VPELTQQ F+AKNMMCAADPRHGRYLTCACMFRG++S +E+D QM  VVNKNSS FVEWIPNN+KASICDIPP GLKMS TF+GN+TA+QEVWKR+ +QF  MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT EEE E DED
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVIADEHGVDPTGAYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSIIPSPKVSDTVVEPYNATLSVHQLVENADQCFVLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCACMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFIGNSTAVQEVWKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 439
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BLAST of NO14G00790 vs. NCBI_GenBank
Match: XP_009035452.1 (tubulin beta chain [Aureococcus anophagefferens] >XP_009036750.1 tubulin beta chain [Aureococcus anophagefferens] >XP_009039073.1 tubulin beta chain [Aureococcus anophagefferens] >EGB06117.1 tubulin beta chain [Aureococcus anophagefferens] >EGB08765.1 tubulin beta chain [Aureococcus anophagefferens] >EGB09376.1 tubulin beta chain [Aureococcus anophagefferens])

HSP 1 Score: 761.9 bits (1966), Expect = 1.100e-216
Identity = 348/442 (78.73%), Postives = 401/442 (90.72%), Query Frame = 0 
Query:    1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEE-EMDEDIYG 442
            MREI+H+Q GQCGNQIG KFWEVIS+EHG+ P G+Y GDSD QLERI+VYY EA GGRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CDCLQGFQ+THS+GGGTG+GMGTLL+SKIREEYPDR++S+Y++IPS KVSDTVVEPYNA LSVHQLVEN+DQCFTLDNEALYDIC RTLKL+ PTYGDLNHL++AA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF VGFAPL++ G+QQY AL+VPELTQQ F+AKNMMCAADPRHGRYLTC+C+FRG++S +E+D QM  V+NKNSS FVEWIPNN+K++ICDIPP GLKMS TF+GN+TAIQE WKR+ EQF  MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT EEE E DED  G
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENSDQCFTLDNEALYDICFRTLKLTTPTYGDLNHLIAAALCGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCSCLFRGRMSTKEVDEQMLNVINKNSSYFVEWIPNNVKSAICDIPPKGLKMSTTFIGNSTAIQETWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEEG 442
[Close]
BLAST of NO14G00790 vs. NCBI_GenBank
Match: P30156.1 (RecName: Full=Tubulin beta-5 chain; AltName: Full=Beta-5-tubulin >AAA33284.1 beta-tubulin [Ectocarpus variabilis] >CBJ30701.1 beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 759.6 bits (1960), Expect = 5.500e-216
Identity = 353/439 (80.41%), Postives = 398/439 (90.66%), Query Frame = 0 
Query:    1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEE-EMDED 439
            MREI+H+QAGQCGNQIG KFWEVIS+EHGI P GSY GDSD QLERI+ Y+ EA GGRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CD LQGFQ+THS+GGGTG+GMGTLL+SK+REEYPDR++S+Y++IPS KVSDTVVEPYNA LSVHQLVENADQCFTLDNEALYDIC RTLKL+ PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPL++ G+QQY AL+VPELTQQ F++KNMMCAADPRHGRYLTCA MFRG++S +E+D QM  VVNKNSS FVEWIPNN+KASICDIPP GLKMS TFVGN TAIQEVWKR+ EQF  MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT EEE E DED
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 439
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BLAST of NO14G00790 vs. NCBI_GenBank
Match: CBJ26065.1 (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 759.2 bits (1959), Expect = 7.200e-216
Identity = 353/439 (80.41%), Postives = 398/439 (90.66%), Query Frame = 0 
Query:    1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEE-EMDED 439
            MREI+H+QAGQCGNQIG KFWEVIS+EHGI P G+Y GDSD QLERI+ Y+ EA GGRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CD LQGFQ+THS+GGGTG+GMGTLL+SK+REEYPDRI+S+Y++IPS KVSDTVVEPYNA LSVHQLVENADQCFTLDNEALYDIC RTLKL+ PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPL++ G+QQY AL+VPELTQQ F++KNMMCAADPRHGRYLTCA MFRG++S +E+D QM  VVNKNSS FVEWIPNN+KASICDIPP GLKMS TFVGN TAIQEVWKR+ EQF  MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT EEE E DED
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGAYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 439
[Close]
BLAST of NO14G00790 vs. NCBI_GenBank
Match: CBN79446.1 (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 757.7 bits (1955), Expect = 2.100e-215
Identity = 352/439 (80.18%), Postives = 397/439 (90.43%), Query Frame = 0 
Query:    1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEE-EMDED 439
            MREI+H+QAGQCGNQIG KFWEVIS+EHGI P G Y GDSD QLERI+ Y+ EA GGRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CD LQGFQ+THS+GGGTG+GMGTLL+SK+REEYPDRI+S+Y++IPS KVSDTVVEPYNA LSVHQLVENADQCFTLDNEALYDIC RTLKL+ PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPL++ G+QQY AL+VPELTQQ F++KNMMCAADPRHGRYLTCA MFRG++S +E+D QM  VVNKNSS FVEWIPNN+KASICD+PP GLKMS TFVGN TAIQEVWKR+ EQF  MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT EEE E DED
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 439
[Close]
BLAST of NO14G00790 vs. NCBI_GenBank
Match: P30157.1 (RecName: Full=Tubulin beta-6 chain; AltName: Full=Beta-6-tubulin >AAA33285.1 beta-tubulin [Ectocarpus variabilis])

HSP 1 Score: 756.1 bits (1951), Expect = 6.100e-215
Identity = 352/439 (80.18%), Postives = 396/439 (90.21%), Query Frame = 0 
Query:    1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEE-EMDED 439
            MREI+H+QAGQCGNQIG KFWEVIS+EHGI P G Y GDSD QLERI+ Y+ EA  GRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CD LQGFQ+THS+GGGTG+GMGTLL+SK+REEYPDRI+S+Y++IPS KVSDTVVEPYNA LSVHQLVENADQCFTLDNEALYDIC RTLKL+ PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPL++ G+QQY AL+VPELTQQ F++KNMMCAADPRHGRYLTCA MFRG++S +E+D QM  VVNKNSS FVEWIPNN+KASICDIPP GLKMS TFVGN TAIQEVWKR+ EQF  MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT EEE E DED
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGDSDLQLERINCYFNEATAGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 439
[Close]
BLAST of NO14G00790 vs. NCBI_GenBank
Match: CBN79445.1 (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 755.0 bits (1948), Expect = 1.400e-214
Identity = 351/438 (80.14%), Postives = 397/438 (90.64%), Query Frame = 0 
Query:    2 REILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEE-EMDED 439
            REI+H+QAGQCGNQIG KFWEVIS+EHGI P G Y GDSD QLERI+ Y+ EA+GGRYVPRA+L+DLEPGTMDS RS  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CD LQGFQ+THS+GGGTG+GMGTLL+SK+REEYPDRI+S+Y++IPS KVSDTVVEPYNA LSVHQLVENADQCFTLDNEALYDIC RTLKL+ PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPL++  +QQY ALSVPELTQQ F++KNMMCAADPRHGRYLTCA MFRG++S +E+D QM  VVNKNSS FVEWIPNN+KASICD+PP GLKMS TFVGN TAIQEVWKR+ EQF  MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT+E+E E DED
Sbjct:    3 REIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRNSQQYRALSVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLAVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIEDEGEYDED 440
[Close]
BLAST of NO14G00790 vs. NCBI_GenBank
Match: XP_002292479.1 (tubulin beta [Thalassiosira pseudonana CCMP1335] >EED90454.1 tubulin beta [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 751.1 bits (1938), Expect = 2.000e-213
Identity = 343/443 (77.43%), Postives = 399/443 (90.07%), Query Frame = 0 
Query:    1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEEEM--DEDIYG 442
            MREI+H+Q GQCGNQIG KFWEV+S+EHG+ P G+Y GDSD QLERI+VY+ EA GGRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CDC+QGFQ+THSLGGGTG+GMGTLL+SKIREEYPDR++S+Y++IPS KVSDTVVEPYNA LSVHQLVENADQCF LDNEALYDIC RTLKL+ PTYGDLNHL++AA+CGTTC LRFPGQLNCDLRKL+VNMVPFPRLHFF VG+APL++ G+QQY AL+VPELTQQ F+AKNMMCAADPRHGRYLTCA +FRG++S++E+D QM  VVNKNSS FVEWIPNN+KASICDIPP G+KM+ TFVGN TA+QE WKR+ EQF +MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT +EE    DED+ G
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVMSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCMQGFQLTHSLGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRTLKLTTPTYGDLNHLIAAAVCGTTCCLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGYAPLTSRGSQQYRALTVPELTQQCFDAKNMMCAADPRHGRYLTCAVLFRGRMSSKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGIKMATTFVGNTTAVQETWKRVAEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEFDDEDLEG 443
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BLAST of NO14G00790 vs. NCBI_GenBank
Match: CBJ26064.1 (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 750.4 bits (1936), Expect = 3.300e-213
Identity = 349/435 (80.23%), Postives = 393/435 (90.34%), Query Frame = 0 
Query:    5 LHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEE-EMDED 439
            +H+QAGQCGNQIG KFWEVIS+EHGI P G+Y GDSD QLERI+ Y+ EA GGRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF+ GQ+GAGNNWAKGHYTEGAELID+VLD +R+E E+CD LQGFQMTHS+GGGTG+GMGTLL+SKIREEYPDR++S+Y++IPS KVSDTVVEPYNA LSVHQLVENADQCF LDNEALYDIC RTLKL+ PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPL++ G+QQY AL+VPELTQQ F++KNMMCAADPRHGRYLTCA MFRG++S +E+D QM  VVNKNSS FVEWIPNN+KASICDIPP GLKMS TFVGN TAIQEVWKR+ EQF  MF RKAFLHWYTGEGM+E+EFTEAESN+ DL+SEYQQYQDAT EEE E DED
Sbjct:   32 VHVQAGQCGNQIGSKFWEVISDEHGIDPTGAYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQMTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFMLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDED 466
The following BLAST results are available for this feature:
BLAST of NO14G00790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24719.11.600e-23686.83beta tubulin [Nannochloropsis gaditana][more]
XP_005852742.11.300e-21780.18tubulin beta [Nannochloropsis gaditana CCMP526] >E... [more]
XP_009035452.11.100e-21678.73tubulin beta chain [Aureococcus anophagefferens] >... [more]
P30156.15.500e-21680.41RecName: Full=Tubulin beta-5 chain; AltName: Full=... [more]
CBJ26065.17.200e-21680.41beta tubulin [Ectocarpus siliculosus][more]
CBN79446.12.100e-21580.18beta tubulin [Ectocarpus siliculosus][more]
P30157.16.100e-21580.18RecName: Full=Tubulin beta-6 chain; AltName: Full=... [more]
CBN79445.11.400e-21480.14beta tubulin [Ectocarpus siliculosus][more]
XP_002292479.12.000e-21377.43tubulin beta [Thalassiosira pseudonana CCMP1335] >... [more]
CBJ26064.13.300e-21380.23beta tubulin [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002276NSK002276Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00790.1NO14G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|33486gene_5648Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100180g4gene5762Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00790.1NO14G00790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00790 ID=NO14G00790|Name=NO14G00790|organism=Nannochloropsis oceanica|type=gene|length=4441bp
AAAAAAACTGCCAAAACCATTTTAAACTCGGCCAAAATAAGGGAAGAGAT
GCAACAATTTATCGCTGGAAGGCTTTCCCTCGTGAGTAATCCTGAGAGGA
GGCTCGCTTGTATAAACACTTGTGTTTGCATTTGACTGCGGATAGTTTGC
ACGCGATAATTTTAGGATTGTAGAAAGCTACAGAAAAAGCTTGAGCCGTT
GATGAAATCAGGAGCGACCAGGCCCCACCCGCACGGACTCGCAAGAGGAA
ACATCCACAGGGTGTAAAACAAATCATTTCTTTTTGGTCCGCAAACTCCT
TCTACTATTGTTGTCTTTGGGCACCTTGTTGTCGACCGAAGCAAGAGTCC
AAACTTGTCTGTCTAATCAGTGCATGTCTCTTATGCATGATGGGCCTCGC
CCGGGAGACACGGAACAAGCAAACACTTTGCTTTGCATGCGCGACGACCC
ACGAACAGCAATGACAACCTCTAAGCCTACTCCTACCCTCACGTTCAGGC
CATCTTTACCGTATACACGGGCGACACACGCTTCATCGTCCTCGGTGAAA
CGCAGGAGGAAGGCAGGAGAGAGGGCTTTCCGCTGTCTTGCAAACGCTTC
CCCCGGCACGACGCCAAATAAACCCGATTCTTCACCCCTTCCCAACTCCC
CCTTTAATAGCACAGGACACCTTTCTCTTATTCACCATGCGTGAGATCCT
CCACCTCCAAGCGGGGCAATGCGGCAACCAGATCGGCTGCAAGTTCTGGG
AAGTCATCAGCGAAGAGCATGGGATCCAGCCCGATGGTTCGTACAAGGGC
GACTCTGACACCCAGCTCGAGCGCATTGATGTCTACTATACAGAGGCCAA
CGGCGGGCGCTACGTGCCTCGTGCTTTGTTGGTGGACTTGGAGCCGGGGA
CCATGGACTCGGCCCGTTCTAGTACTTATGGCGGGCTCTTTCGACCAGgt
atgtaaggtggacgaagacgggaggagagagggaggaagggaaggaccgc
tccggtggatgagttggatcttgtagtgaagagaaatgcagacggagagg
aagagagggaggagccgaggaggaagggaggaattactgaagggaggaag
aggaggggtggcagggtcataaacgtgaggaagggagacagatgggggac
cagcggtctggagggcaagggacaggcagaggagaaagggaggaaaggaa
gggggagcgaaaggtgtgtttagcggcaatggcaggttcagaagaagcag
caacaacaacaacaacaaccgcagcaacagccgcacatgatttcattccc
ctccgtccctgcttccctccggccctccttccctccccatcctcgacagA
CAACTTCCTCCACGGGCAGTCTGGTGCTGGCAATAACTGGGCCAAGGGGC
ATTACACCGAAGGCGCGGAGCTGATCGACACGGTGCTTGACGCTCTGCGA
CGAGAGGTGGAAAATTGTGATTGCTTGCAGGGgtaggttcggagggaggg
agggagggagggaaggagggaggaagggagtgaggaaggatgaagtggtt
ataatgatttccctgttaattctgtccaacgtccgctcacacatccctcc
ctctttccctccctctcacctatttccctcccacagCTTCCAAATGACGC
ATTCGTTGGGCGGCGGCACCGGTTCCGGCATGGGCACTCTCCTGCTCTCC
AAGATCAGGGAAGAATACCCTGATCGAATCCTCAGCTCGTACGCCATCAT
TCCCTCGGCGAAGgtgaggaaggggaggaaggaaaggagggagggaggga
gggagggagggagggagggaggggagggaaggttggttccatggtcgacc
gccttcttcccctttcgccatccgccaagggcgttgattcatccctccct
ccgtccctccctccctcccagGTGTCGGACACAGTTGTAGAGCCCTACAA
TGCCATGCTCTCGGTGCACCAGCTCGTGGAAAACGCCGACCAGTGTTTCA
CCCTCGACAACGAGgtgagttccttccttccttccctccctccctccctc
cctccttccctcccttcccaggatccctcgccagctgcctcatttaatcg
cacctcccctactccctccctccctccctcgccccctcttttcctccccc
tcccagGCCCTCTACGACATTTGCCTCCGCACCCTCAAGCTGTCTAACCC
CACCTACGGTGACCTCAATCACCTTGTGTCCGCCGCCATGTGCGGGACCA
CTTGCTCCCTCCGTTTCCCCGGACAGCTCAACTGCGATCTGCGCAAGgta
tatatatatatatatctatatgtatatatatatacatatatatatctata
tgtatatatatatatatacatatagatatatatacatatagatatatata
gatatagatatagatatactccctcactcccccccttacaccccgccctc
cctccctcctgccctttctcatctatcccccttcctcccgtcctccctct
accccctccctccctccaaccccccgcttacagCTCTCGGTGAACATGGT
GCCCTTCCCTCGCCTTCATTTCTTCAGCGTCGGTTTCGCACCCTTGgtat
ggccctttttccctccctccctccctccctcccgccctcctgtccattct
ctgaataccacaacactgaccatctagcaccactcactgtgcactgcctg
cgcgccaatctcacgctttcctccctccctccctctctccctccctccag
AGCGCTCCCGGCACTCAGCAATACCATGCCTTGTCGGTGCCCGAATTAAC
GCAGCAAGCCTTTGAAGCTAAGAACATGATGTGCGCCGCCGACCCCCGCC
ACGGCCGgtacgtgccgtttcctccctccctccctccctccctcgaacgg
ttccctcgaacggctccctcgaacggctccctcgaacggctccctctaat
ggctccttcgctttggtccgttacagGTACCTTACCTGCGCCTGCATGTT
CCGCGGCAAGATTTCGGCGCGTGAGATGGACGTGCAGATGTCTCAGGTCG
TGAACAAGAACTCGTCGAATTTCGTGGAGTGGATCCCCAACAACATCAAG
GCTTCCATCTGCGACATTCCACCCACAGGGCTGAAGgtatatctctccct
tcctccctccctccctttctttctcctacactgcctctgacacttcttcc
tccttgtcgtctttcctcccttcctttgtttcctacctaccttttctccc
tccttcctttcctccctccgtccatcccttcattcaccgctttgtatctt
ttctctaccatcttgtctgcctctctcgttgtcaccgtccactgaccacc
ctccctccctgcctccctccctcccatcccctccccctccctagATGTCC
GCCACATTCGTCGGGAACAACACGGCCATCCAAGAAGTCTGGAAACGCAT
CGGCGAGCAGTTTGGATTAATGTTTGCGCGGAAGGCCTTCTTGCACTGgt
aaggaagggaggaggggagggaaggggagtagggaagggcgggaaacgag
tcattatttccatgtatggaaggtcaaggctcaaatatatattatttctc
atactcacacttgtccctccctctttccctcactccctccctccctcagG
TACACTGGGGAGGGTATGGAGGAGCTAGAGTTCACGGAGGCTGAGTCTAA
TTTGCAAGACCTCATTTCCGAGTACCAGCAGTACCAGgtgagcacccttt
ccctccctgcctccctgcctccctccctccctccccttccttcgtgcaat
tgtcttgttttcctgtctccctcgattctcctcctcctctgctcttcttt
acttcttcgtaaatcaaaattctatgatgatggtcacttttttcccaatt
atcttgtgctttttccctcacccttccacccttccttccaaaacctccac
tacagGACGCGACGGTCGAGGAAGAGGAAATGGACGAGGACATCTACGGC
CACGGGCAGCTCCTCGACGAGGAGAGGTAATTAAATTAGGCTGAGACACG
CCGGAGAGAGAGGGGGGGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAG
AGAGAGATCTATTAAGTTGACGAAAAGTACACTCAGAAACGCAATATGGA
GCAAAAATATGATGTATCTCCCCGAGGAATATCATTTCATTTCTGTTTGG
TATTAAGGAGGATCGAGAGAAAATGTGGTATGAAAGAGATCGGGGAGAGG
AAAAATAGAACAAAAAGAAACGAAGTAGAAAGCCTCGAGAACCAAGTGTC
TGCTTGCGAAAGGGGAGAAAGAAAATAAGGAGTGGAAAGGGGAGAAGAAG
AAACGTGAATGCTTAATCTAAAAGCGACCAAAATCTAAAGTGCGGCTTCT
AGCAACAAAGAACCACGAATACTGCGCATGCAGCATGAGGA
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protein sequence of NO14G00790.1

>NO14G00790.1-protein ID=NO14G00790.1-protein|Name=NO14G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVY
YTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNN
WAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTL
LLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCF
TLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDL
RKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMM
CAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIK
ASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTG
EGMEELEFTEAESNLQDLISEYQQYQDATVEEEEMDEDIYGHGQLLDEER
*
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Synonyms
Publications