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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:281441..285881 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00790.1 vs.
Match: EWM24719.1 (beta tubulin [Nannochloropsis gaditana]) HSP 1 Score: 827.8 bits (2137), Expect = 1.600e-236 Identity = 389/448 (86.83%), Postives = 423/448 (94.42%), Query Frame = 0
Query: 1 MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVYYTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNNWAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTLLLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCFTLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMMCAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIKASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTGEGMEELEFTEAESNLQDLISEYQQYQDATVEEEEMDEDIYGHGQLLDE 449
MREILH+QAGQCGNQIGCKFWEVIS EHGIQPDGSYKG+S TQLERIDVYY EAN GRYVPRALL+DLEPGTMDSARSS YGGLFRPDNF++GQSGAGNNWAKGHYTEGAEL+DTVLDALR+EVE+CDCLQGFQMTHSLGGGTGSG+GTLL+SK++EE+PDRILSSYA+IPSAKVSDTVVEPYNAMLSVHQLVENADQCF LDNEALY+ICLRTLKL NPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPL+ +Q Y L+V ELTQQAF+AKNMMCA+DPRHGRYLTCACMFRG+ISA +MDVQMSQ V+KNS+ FVEWIPNNIKASIC++PP G+KMSATFVGNNTAIQ VWKRI +QFGLMF+RKAFLHWYTGEGMEELEFTEA+SNLQDLI+EYQQYQDA V+EEE++ DIYGHG L E
Sbjct: 1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDAMVDEEEIEADIYGHGYTLQE 448
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00790.1 ID=NO14G00790.1|Name=NO14G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2450bp AAAAAAACTGCCAAAACCATTTTAAACTCGGCCAAAATAAGGGAAGAGAT GCAACAATTTATCGCTGGAAGGCTTTCCCTCGTGAGTAATCCTGAGAGGA GGCTCGCTTGTATAAACACTTGTGTTTGCATTTGACTGCGGATAGTTTGC ACGCGATAATTTTAGGATTGTAGAAAGCTACAGAAAAAGCTTGAGCCGTT GATGAAATCAGGAGCGACCAGGCCCCACCCGCACGGACTCGCAAGAGGAA ACATCCACAGGGTGTAAAACAAATCATTTCTTTTTGGTCCGCAAACTCCT TCTACTATTGTTGTCTTTGGGCACCTTGTTGTCGACCGAAGCAAGAGTCC AAACTTGTCTGTCTAATCAGTGCATGTCTCTTATGCATGATGGGCCTCGC CCGGGAGACACGGAACAAGCAAACACTTTGCTTTGCATGCGCGACGACCC ACGAACAGCAATGACAACCTCTAAGCCTACTCCTACCCTCACGTTCAGGC CATCTTTACCGTATACACGGGCGACACACGCTTCATCGTCCTCGGTGAAA CGCAGGAGGAAGGCAGGAGAGAGGGCTTTCCGCTGTCTTGCAAACGCTTC CCCCGGCACGACGCCAAATAAACCCGATTCTTCACCCCTTCCCAACTCCC CCTTTAATAGCACAGGACACCTTTCTCTTATTCACCATGCGTGAGATCCT CCACCTCCAAGCGGGGCAATGCGGCAACCAGATCGGCTGCAAGTTCTGGG AAGTCATCAGCGAAGAGCATGGGATCCAGCCCGATGGTTCGTACAAGGGC GACTCTGACACCCAGCTCGAGCGCATTGATGTCTACTATACAGAGGCCAA CGGCGGGCGCTACGTGCCTCGTGCTTTGTTGGTGGACTTGGAGCCGGGGA CCATGGACTCGGCCCGTTCTAGTACTTATGGCGGGCTCTTTCGACCAGAC AACTTCCTCCACGGGCAGTCTGGTGCTGGCAATAACTGGGCCAAGGGGCA TTACACCGAAGGCGCGGAGCTGATCGACACGGTGCTTGACGCTCTGCGAC GAGAGGTGGAAAATTGTGATTGCTTGCAGGGCTTCCAAATGACGCATTCG TTGGGCGGCGGCACCGGTTCCGGCATGGGCACTCTCCTGCTCTCCAAGAT CAGGGAAGAATACCCTGATCGAATCCTCAGCTCGTACGCCATCATTCCCT CGGCGAAGGTGTCGGACACAGTTGTAGAGCCCTACAATGCCATGCTCTCG GTGCACCAGCTCGTGGAAAACGCCGACCAGTGTTTCACCCTCGACAACGA GGCCCTCTACGACATTTGCCTCCGCACCCTCAAGCTGTCTAACCCCACCT ACGGTGACCTCAATCACCTTGTGTCCGCCGCCATGTGCGGGACCACTTGC TCCCTCCGTTTCCCCGGACAGCTCAACTGCGATCTGCGCAAGCTCTCGGT GAACATGGTGCCCTTCCCTCGCCTTCATTTCTTCAGCGTCGGTTTCGCAC CCTTGAGCGCTCCCGGCACTCAGCAATACCATGCCTTGTCGGTGCCCGAA TTAACGCAGCAAGCCTTTGAAGCTAAGAACATGATGTGCGCCGCCGACCC CCGCCACGGCCGGTACCTTACCTGCGCCTGCATGTTCCGCGGCAAGATTT CGGCGCGTGAGATGGACGTGCAGATGTCTCAGGTCGTGAACAAGAACTCG TCGAATTTCGTGGAGTGGATCCCCAACAACATCAAGGCTTCCATCTGCGA CATTCCACCCACAGGGCTGAAGATGTCCGCCACATTCGTCGGGAACAACA CGGCCATCCAAGAAGTCTGGAAACGCATCGGCGAGCAGTTTGGATTAATG TTTGCGCGGAAGGCCTTCTTGCACTGGTACACTGGGGAGGGTATGGAGGA GCTAGAGTTCACGGAGGCTGAGTCTAATTTGCAAGACCTCATTTCCGAGT ACCAGCAGTACCAGGACGCGACGGTCGAGGAAGAGGAAATGGACGAGGAC ATCTACGGCCACGGGCAGCTCCTCGACGAGGAGAGGTAATTAAATTAGGC TGAGACACGCCGGAGAGAGAGGGGGGGAGAGAGAGAGAGGGAGAGAGAGA GAGAGAGAGAGAGAGATCTATTAAGTTGACGAAAAGTACACTCAGAAACG CAATATGGAGCAAAAATATGATGTATCTCCCCGAGGAATATCATTTCATT TCTGTTTGGTATTAAGGAGGATCGAGAGAAAATGTGGTATGAAAGAGATC GGGGAGAGGAAAAATAGAACAAAAAGAAACGAAGTAGAAAGCCTCGAGAA CCAAGTGTCTGCTTGCGAAAGGGGAGAAAGAAAATAAGGAGTGGAAAGGG GAGAAGAAGAAACGTGAATGCTTAATCTAAAAGCGACCAAAATCTAAAGT GCGGCTTCTAGCAACAAAGAACCACGAATACTGCGCATGCAGCATGAGGA back to topprotein sequence of NO14G00790.1 >NO14G00790.1-protein ID=NO14G00790.1-protein|Name=NO14G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp MREILHLQAGQCGNQIGCKFWEVISEEHGIQPDGSYKGDSDTQLERIDVY YTEANGGRYVPRALLVDLEPGTMDSARSSTYGGLFRPDNFLHGQSGAGNN WAKGHYTEGAELIDTVLDALRREVENCDCLQGFQMTHSLGGGTGSGMGTL LLSKIREEYPDRILSSYAIIPSAKVSDTVVEPYNAMLSVHQLVENADQCF TLDNEALYDICLRTLKLSNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDL RKLSVNMVPFPRLHFFSVGFAPLSAPGTQQYHALSVPELTQQAFEAKNMM CAADPRHGRYLTCACMFRGKISAREMDVQMSQVVNKNSSNFVEWIPNNIK ASICDIPPTGLKMSATFVGNNTAIQEVWKRIGEQFGLMFARKAFLHWYTG EGMEELEFTEAESNLQDLISEYQQYQDATVEEEEMDEDIYGHGQLLDEER * back to topmRNA from alignment at chr14:281441..285881- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00790.1 ID=NO14G00790.1|Name=NO14G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=4441bp|location=Sequence derived from alignment at chr14:281441..285881- (Nannochloropsis oceanica) AAAAAAACTGCCAAAACCATTTTAAACTCGGCCAAAATAAGGGAAGAGAT
GCAACAATTTATCGCTGGAAGGCTTTCCCTCGTGAGTAATCCTGAGAGGA
GGCTCGCTTGTATAAACACTTGTGTTTGCATTTGACTGCGGATAGTTTGC
ACGCGATAATTTTAGGATTGTAGAAAGCTACAGAAAAAGCTTGAGCCGTT
GATGAAATCAGGAGCGACCAGGCCCCACCCGCACGGACTCGCAAGAGGAA
ACATCCACAGGGTGTAAAACAAATCATTTCTTTTTGGTCCGCAAACTCCT
TCTACTATTGTTGTCTTTGGGCACCTTGTTGTCGACCGAAGCAAGAGTCC
AAACTTGTCTGTCTAATCAGTGCATGTCTCTTATGCATGATGGGCCTCGC
CCGGGAGACACGGAACAAGCAAACACTTTGCTTTGCATGCGCGACGACCC
ACGAACAGCAATGACAACCTCTAAGCCTACTCCTACCCTCACGTTCAGGC
CATCTTTACCGTATACACGGGCGACACACGCTTCATCGTCCTCGGTGAAA
CGCAGGAGGAAGGCAGGAGAGAGGGCTTTCCGCTGTCTTGCAAACGCTTC
CCCCGGCACGACGCCAAATAAACCCGATTCTTCACCCCTTCCCAACTCCC
CCTTTAATAGCACAGGACACCTTTCTCTTATTCACCATGCGTGAGATCCT
CCACCTCCAAGCGGGGCAATGCGGCAACCAGATCGGCTGCAAGTTCTGGG
AAGTCATCAGCGAAGAGCATGGGATCCAGCCCGATGGTTCGTACAAGGGC
GACTCTGACACCCAGCTCGAGCGCATTGATGTCTACTATACAGAGGCCAA
CGGCGGGCGCTACGTGCCTCGTGCTTTGTTGGTGGACTTGGAGCCGGGGA
CCATGGACTCGGCCCGTTCTAGTACTTATGGCGGGCTCTTTCGACCAGGT
ATGTAAGGTGGACGAAGACGGGAGGAGAGAGGGAGGAAGGGAAGGACCGC
TCCGGTGGATGAGTTGGATCTTGTAGTGAAGAGAAATGCAGACGGAGAGG
AAGAGAGGGAGGAGCCGAGGAGGAAGGGAGGAATTACTGAAGGGAGGAAG
AGGAGGGGTGGCAGGGTCATAAACGTGAGGAAGGGAGACAGATGGGGGAC
CAGCGGTCTGGAGGGCAAGGGACAGGCAGAGGAGAAAGGGAGGAAAGGAA
GGGGGAGCGAAAGGTGTGTTTAGCGGCAATGGCAGGTTCAGAAGAAGCAG
CAACAACAACAACAACAACCGCAGCAACAGCCGCACATGATTTCATTCCC
CTCCGTCCCTGCTTCCCTCCGGCCCTCCTTCCCTCCCCATCCTCGACAGA
CAACTTCCTCCACGGGCAGTCTGGTGCTGGCAATAACTGGGCCAAGGGGC
ATTACACCGAAGGCGCGGAGCTGATCGACACGGTGCTTGACGCTCTGCGA
CGAGAGGTGGAAAATTGTGATTGCTTGCAGGGGTAGGTTCGGAGGGAGGG
AGGGAGGGAGGGAAGGAGGGAGGAAGGGAGTGAGGAAGGATGAAGTGGTT
ATAATGATTTCCCTGTTAATTCTGTCCAACGTCCGCTCACACATCCCTCC
CTCTTTCCCTCCCTCTCACCTATTTCCCTCCCACAGCTTCCAAATGACGC
ATTCGTTGGGCGGCGGCACCGGTTCCGGCATGGGCACTCTCCTGCTCTCC
AAGATCAGGGAAGAATACCCTGATCGAATCCTCAGCTCGTACGCCATCAT
TCCCTCGGCGAAGGTGAGGAAGGGGAGGAAGGAAAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGAGGGAAGGTTGGTTCCATGGTCGACC
GCCTTCTTCCCCTTTCGCCATCCGCCAAGGGCGTTGATTCATCCCTCCCT
CCGTCCCTCCCTCCCTCCCAGGTGTCGGACACAGTTGTAGAGCCCTACAA
TGCCATGCTCTCGGTGCACCAGCTCGTGGAAAACGCCGACCAGTGTTTCA
CCCTCGACAACGAGGTGAGTTCCTTCCTTCCTTCCCTCCCTCCCTCCCTC
CCTCCTTCCCTCCCTTCCCAGGATCCCTCGCCAGCTGCCTCATTTAATCG
CACCTCCCCTACTCCCTCCCTCCCTCCCTCGCCCCCTCTTTTCCTCCCCC
TCCCAGGCCCTCTACGACATTTGCCTCCGCACCCTCAAGCTGTCTAACCC
CACCTACGGTGACCTCAATCACCTTGTGTCCGCCGCCATGTGCGGGACCA
CTTGCTCCCTCCGTTTCCCCGGACAGCTCAACTGCGATCTGCGCAAGGTA
TATATATATATATATCTATATGTATATATATATACATATATATATCTATA
TGTATATATATATATATACATATAGATATATATACATATAGATATATATA
GATATAGATATAGATATACTCCCTCACTCCCCCCCTTACACCCCGCCCTC
CCTCCCTCCTGCCCTTTCTCATCTATCCCCCTTCCTCCCGTCCTCCCTCT
ACCCCCTCCCTCCCTCCAACCCCCCGCTTACAGCTCTCGGTGAACATGGT
GCCCTTCCCTCGCCTTCATTTCTTCAGCGTCGGTTTCGCACCCTTGGTAT
GGCCCTTTTTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCTGTCCATTCT
CTGAATACCACAACACTGACCATCTAGCACCACTCACTGTGCACTGCCTG
CGCGCCAATCTCACGCTTTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCAG
AGCGCTCCCGGCACTCAGCAATACCATGCCTTGTCGGTGCCCGAATTAAC
GCAGCAAGCCTTTGAAGCTAAGAACATGATGTGCGCCGCCGACCCCCGCC
ACGGCCGGTACGTGCCGTTTCCTCCCTCCCTCCCTCCCTCCCTCGAACGG
TTCCCTCGAACGGCTCCCTCGAACGGCTCCCTCGAACGGCTCCCTCTAAT
GGCTCCTTCGCTTTGGTCCGTTACAGGTACCTTACCTGCGCCTGCATGTT
CCGCGGCAAGATTTCGGCGCGTGAGATGGACGTGCAGATGTCTCAGGTCG
TGAACAAGAACTCGTCGAATTTCGTGGAGTGGATCCCCAACAACATCAAG
GCTTCCATCTGCGACATTCCACCCACAGGGCTGAAGGTATATCTCTCCCT
TCCTCCCTCCCTCCCTTTCTTTCTCCTACACTGCCTCTGACACTTCTTCC
TCCTTGTCGTCTTTCCTCCCTTCCTTTGTTTCCTACCTACCTTTTCTCCC
TCCTTCCTTTCCTCCCTCCGTCCATCCCTTCATTCACCGCTTTGTATCTT
TTCTCTACCATCTTGTCTGCCTCTCTCGTTGTCACCGTCCACTGACCACC
CTCCCTCCCTGCCTCCCTCCCTCCCATCCCCTCCCCCTCCCTAGATGTCC
GCCACATTCGTCGGGAACAACACGGCCATCCAAGAAGTCTGGAAACGCAT
CGGCGAGCAGTTTGGATTAATGTTTGCGCGGAAGGCCTTCTTGCACTGGT
AAGGAAGGGAGGAGGGGAGGGAAGGGGAGTAGGGAAGGGCGGGAAACGAG
TCATTATTTCCATGTATGGAAGGTCAAGGCTCAAATATATATTATTTCTC
ATACTCACACTTGTCCCTCCCTCTTTCCCTCACTCCCTCCCTCCCTCAGG
TACACTGGGGAGGGTATGGAGGAGCTAGAGTTCACGGAGGCTGAGTCTAA
TTTGCAAGACCTCATTTCCGAGTACCAGCAGTACCAGGTGAGCACCCTTT
CCCTCCCTGCCTCCCTGCCTCCCTCCCTCCCTCCCCTTCCTTCGTGCAAT
TGTCTTGTTTTCCTGTCTCCCTCGATTCTCCTCCTCCTCTGCTCTTCTTT
ACTTCTTCGTAAATCAAAATTCTATGATGATGGTCACTTTTTTCCCAATT
ATCTTGTGCTTTTTCCCTCACCCTTCCACCCTTCCTTCCAAAACCTCCAC
TACAGGACGCGACGGTCGAGGAAGAGGAAATGGACGAGGACATCTACGGC
CACGGGCAGCTCCTCGACGAGGAGAGGTAATTAAATTAGGCTGAGACACG
CCGGAGAGAGAGGGGGGGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAG
AGAGAGATCTATTAAGTTGACGAAAAGTACACTCAGAAACGCAATATGGA
GCAAAAATATGATGTATCTCCCCGAGGAATATCATTTCATTTCTGTTTGG
TATTAAGGAGGATCGAGAGAAAATGTGGTATGAAAGAGATCGGGGAGAGG
AAAAATAGAACAAAAAGAAACGAAGTAGAAAGCCTCGAGAACCAAGTGTC
TGCTTGCGAAAGGGGAGAAAGAAAATAAGGAGTGGAAAGGGGAGAAGAAG
AAACGTGAATGCTTAATCTAAAAGCGACCAAAATCTAAAGTGCGGCTTCT
AGCAACAAAGAACCACGAATACTGCGCATGCAGCATGAGGA back to topCoding sequence (CDS) from alignment at chr14:281441..285881- >NO14G00790.1 ID=NO14G00790.1|Name=NO14G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at chr14:281441..285881- (Nannochloropsis oceanica) ATGCGTGAGATCCTCCACCTCCAAGCGGGGCAATGCGGCAACCAGATCGG CTGCAAGTTCTGGGAAGTCATCAGCGAAGAGCATGGGATCCAGCCCGATG GTTCGTACAAGGGCGACTCTGACACCCAGCTCGAGCGCATTGATGTCTAC TATACAGAGGCCAACGGCGGGCGCTACGTGCCTCGTGCTTTGTTGGTGGA CTTGGAGCCGGGGACCATGGACTCGGCCCGTTCTAGTACTTATGGCGGGC TCTTTCGACCAGACAACTTCCTCCACGGGCAGTCTGGTGCTGGCAATAAC TGGGCCAAGGGGCATTACACCGAAGGCGCGGAGCTGATCGACACGGTGCT TGACGCTCTGCGACGAGAGGTGGAAAATTGTGATTGCTTGCAGGGCTTCC AAATGACGCATTCGTTGGGCGGCGGCACCGGTTCCGGCATGGGCACTCTC CTGCTCTCCAAGATCAGGGAAGAATACCCTGATCGAATCCTCAGCTCGTA CGCCATCATTCCCTCGGCGAAGGTGTCGGACACAGTTGTAGAGCCCTACA ATGCCATGCTCTCGGTGCACCAGCTCGTGGAAAACGCCGACCAGTGTTTC ACCCTCGACAACGAGGCCCTCTACGACATTTGCCTCCGCACCCTCAAGCT GTCTAACCCCACCTACGGTGACCTCAATCACCTTGTGTCCGCCGCCATGT GCGGGACCACTTGCTCCCTCCGTTTCCCCGGACAGCTCAACTGCGATCTG CGCAAGCTCTCGGTGAACATGGTGCCCTTCCCTCGCCTTCATTTCTTCAG CGTCGGTTTCGCACCCTTGAGCGCTCCCGGCACTCAGCAATACCATGCCT TGTCGGTGCCCGAATTAACGCAGCAAGCCTTTGAAGCTAAGAACATGATG TGCGCCGCCGACCCCCGCCACGGCCGGTACCTTACCTGCGCCTGCATGTT CCGCGGCAAGATTTCGGCGCGTGAGATGGACGTGCAGATGTCTCAGGTCG TGAACAAGAACTCGTCGAATTTCGTGGAGTGGATCCCCAACAACATCAAG GCTTCCATCTGCGACATTCCACCCACAGGGCTGAAGATGTCCGCCACATT CGTCGGGAACAACACGGCCATCCAAGAAGTCTGGAAACGCATCGGCGAGC AGTTTGGATTAATGTTTGCGCGGAAGGCCTTCTTGCACTGGTACACTGGG GAGGGTATGGAGGAGCTAGAGTTCACGGAGGCTGAGTCTAATTTGCAAGA CCTCATTTCCGAGTACCAGCAGTACCAGGACGCGACGGTCGAGGAAGAGG AAATGGACGAGGACATCTACGGCCACGGGCAGCTCCTCGACGAGGAGAGG TAA back to top
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