NO14G00620, NO14G00620 (gene) Nannochloropsis oceanica

Overview
NameNO14G00620
Unique NameNO14G00620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2151
Alignment locationchr14:236164..238314 +

Link to JBrowse

Properties
Property NameValue
DescriptionUPF0250 protein NE1487
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:236164..238314 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027471YbeD-like_sf
IPR007454UPF0250
Homology
The following BLAST results are available for this feature:
BLAST of NO14G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32862gene_5630Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00620.1NO14G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G00620.2NO14G00620.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G00620.3NO14G00620.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00620.1NO14G00620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G00620.2NO14G00620.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G00620.3NO14G00620.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00620 ID=NO14G00620|Name=NO14G00620|organism=Nannochloropsis oceanica|type=gene|length=2151bp
ACAGACCCACCAACGCATCAGCAATGATTCCAAGGGCTCCCGCCACTAGC
GCCAGCCCTCAATCACTATCTCTTCTCGTCCTCCTCCTCGCCCTCCTTCA
CACTACCATCACCACGGCCTTTCTCCTCCCTCATCCCTCCACCAGCCCCA
CTCGTCAGCAGCAGGTGTCGCTCTCATCCTTGTCTCCTTTCTCCTTGCGG
AAAGCCTCGCTGGCGGCCAAGgtacgttcgtttttactataattcccttg
ccccccctcccgccccctccccccccctccctcgtcccttccttcctggc
tccctcccatcttcacccttgcgtgtgctgtccctttcacacctctctga
tgaatgctgccccagcactgtagacgaccggtgtgtgagctccttttttt
cttctttgtgggtatgtaaacacaccaacccatccgtccgtccgtccctc
ccttcctccccacgtccttcccttgcttcctccctccctccattagGGCT
TTGGTTTTGGCAAAGGACAGAGCGCGCAGCGAAACGGCACGAACGAGGGT
GAGCAAGGACCGGAGCTGTTGTACTACCACCAGGAGAAGgtgagggacgg
agagaggaagggagggagaatgatcggaagcaacgattaggagtatggat
aggggctgcatgactatcgattgaatgagaggaaatggaggatatgcatt
gaaaaggaagaaggaggaaaagaaatgagataaagactgatttaaaatca
aaatcacacgcagggataaatcgtacactcaaccctccctccctccctcc
ctactccctccctccctctctcagGACTCTACCATTGACTCCACCACTCA
ATTTTTAAGGTTTAACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGGGA
TGCGGGTCTTTGATCGCGTCCTGGATTTTCCATGTGTTTTCAACATAAAG
GTGGGGAGGGAGAGGAGGAGGGAGGGAGGGGAGGGAAGCGAGGGAAGGAG
GAAGGAGGATGGGAAACGATTTCGCGCACTTTTCAACTCAGTCTTTCCTC
CATGTCGTGCCTCTTGTGTATATGTTATAATTCAATCATATCAATATTTT
GTTCTATACAAAGAGCTGATAGATCCAATTTATTTATAGGTAATGGGGGT
CATATGCATCTGTAATAATATTTCAGGTATGTTGCTGATTGATACGTACG
TACGCCATGTTTTCTATATACATAGGTGATAGGTCAGCCGGCGGAGAATG
ATGCAGGCAGCTTTGATAGGGACATGGTGGAGCTCGTGGGCCAGgtacga
tattggcgccggatttattttcaattacattttttttttctctaatataa
attgataacgaacgctatttgcatcgccgattcctcccaggacaccagca
gtggaaaatactatagccttaccatcctcccttccctccctccctgccta
gGTCACCGGCGCCCCTCCCTCTGACATTGTGTACTCTTCTCGTGACACCA
GCAGTGGCAAATACCGCAGCCTCACTATCCATGCCCCGGTCAAGAGCGCT
GATGAACTTTATGAGATCTACGAAAAAGTCGATTTAGACCCTAGGGTAAA
GTTTAAGTTCTGAACAAGGCTGCTTCGTCGTATCCCTCCCTCCCTCCCTC
CCTCCTTCCCTCCCTAATTGAACAAAATTGTGACTGATCGTCAAATTGGA
TTTTTTAAAGGGCTCTCTTTCGTTTCCTTCGGGGAGTTGTTAAGTGCTAT
TCTTCTTCCCTTCCTCCATCCCTCCTTTCCCTGCCTGCCTTTTGATGCGA
TGGGTGGGAGGGGCCCTTGGGTATGTCACGGGAAAAGAGGGAGGGAGGGA
GGGAGGGAGGGAGCACAGGTGGATCCTATCCTATGGTGTGTATATATAGA
GGCATATATAGCAAGAAGGAATCAAAGGGAATAAAGGAGGAACAGAAAGA
AGGAGGGAAAGAGAAAAGGGGGGTTTCTGCAGGAGCAGCAGGTCTGCGGC
AGTGGCACAGTAGGAGAGAGATGAGGAGGATAACACGTGCGCGACAAGAA
CGAAAGGAGGAAGAGGTGAAGGGAAATAGGGTAGGGGAAGCAGAGCCATT
AATAATGAGAAGCAAAACATGCGAAAGAAGAATGAAGAAAATTGTCGCAC
A
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protein sequence of NO14G00620.1

>NO14G00620.1-protein ID=NO14G00620.1-protein|Name=NO14G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MIPRAPATSASPQSLSLLVLLLALLHTTITTAFLLPHPSTSPTRQQQVSL
SSLSPFSLRKASLAAKGFGFGKGQSAQRNGTNEGEQGPELLYYHQEKDST
IDSTTQFLRFNTKPAGSQAPPGMRVFDRVLDFPCVFNIKVIGQPAENDAG
SFDRDMVELVGQVTGAPPSDIVYSSRDTSSGKYRSLTIHAPVKSADELYE
IYEKVDLDPRVKFKF*
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protein sequence of NO14G00620.2

>NO14G00620.2-protein ID=NO14G00620.2-protein|Name=NO14G00620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MIPRAPATSASPQSLSLLVLLLALLHTTITTAFLLPHPSTSPTRQQQVSL
SSLSPFSLRKASLAAKGFGFGKGQSAQRNGTNEGEQGPELLYYHQEKDST
IDSTTQFLRFNTKPAGSQAPPGMRVFDRVLDFPCVFNIKVGRERRREGGE
GSEGRRKEDGKRFRALFNSVFPPCRASCVYVIIQSYQYFVLYKELIDPIY
L*
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protein sequence of NO14G00620.3

>NO14G00620.3-protein ID=NO14G00620.3-protein|Name=NO14G00620.3|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MIPRAPATSASPQSLSLLVLLLALLHTTITTAFLLPHPSTSPTRQQQVSL
SSLSPFSLRKASLAAKGFGFGKGQSAQRNGTNEGEQGPELLYYHQEKDST
IDSTTQFLRFNTKPAGSQAPPGMRVFDRVLDFPCVFNIKVGRERRREGGE
GSEGRRKEDGKRFRALFNSVFPPCRASCVYVIIQSYQYFVLYKELIDPIY
L*
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Synonyms
Publications