NO14G00620.3, NO14G00620.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00620.3
Unique NameNO14G00620.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1641
Alignment locationchr14:236164..238314 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:236164..238314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO14G00620.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00620NO14G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00620.3NO14G00620.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00620.3.cds1NO14G00620.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00620.3.cds2NO14G00620.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00620.3.cds3NO14G00620.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00620.3 ID=NO14G00620.3|Name=NO14G00620.3|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp
ACAGACCCACCAACGCATCAGCAATGATTCCAAGGGCTCCCGCCACTAGC
GCCAGCCCTCAATCACTATCTCTTCTCGTCCTCCTCCTCGCCCTCCTTCA
CACTACCATCACCACGGCCTTTCTCCTCCCTCATCCCTCCACCAGCCCCA
CTCGTCAGCAGCAGGTGTCGCTCTCATCCTTGTCTCCTTTCTCCTTGCGG
AAAGCCTCGCTGGCGGCCAAGGGCTTTGGTTTTGGCAAAGGACAGAGCGC
GCAGCGAAACGGCACGAACGAGGGTGAGCAAGGACCGGAGCTGTTGTACT
ACCACCAGGAGAAGGACTCTACCATTGACTCCACCACTCAATTTTTAAGG
TTTAACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGGGATGCGGGTCTT
TGATCGCGTCCTGGATTTTCCATGTGTTTTCAACATAAAGGTGGGGAGGG
AGAGGAGGAGGGAGGGAGGGGAGGGAAGCGAGGGAAGGAGGAAGGAGGAT
GGGAAACGATTTCGCGCACTTTTCAACTCAGTCTTTCCTCCATGTCGTGC
CTCTTGTGTATATGTTATAATTCAATCATATCAATATTTTGTTCTATACA
AAGAGCTGATAGATCCAATTTATTTATAGGTAATGGGGGTCATATGCATC
TGTAATAATATTTCAGGTATGTTGCTGATTGATACGTACGTACGCCATGT
TTTCTATATACATAGGTGATAGGTCAGCCGGCGGAGAATGATGCAGGCAG
CTTTGATAGGGACATGGTGGAGCTCGTGGGCCAGGTACGATATTGGCGCC
GGATTTATTTTCAATTACATTTTTTTTTTCTCTAATATAAATTGATAACG
AACGCTATTTGCATCGCCGATTCCTCCCAGGACACCAGCAGTGGAAAATA
CTATAGCCTTACCATCCTCCCTTCCCTCCCTCCCTGCCTAGGTCACCGGC
GCCCCTCCCTCTGACATTGTGTACTCTTCTCGTGACACCAGCAGTGGCAA
ATACCGCAGCCTCACTATCCATGCCCCGGTCAAGAGCGCTGATGAACTTT
ATGAGATCTACGAAAAAGTCGATTTAGACCCTAGGGTAAAGTTTAAGTTC
TGAACAAGGCTGCTTCGTCGTATCCCTCCCTCCCTCCCTCCCTCCTTCCC
TCCCTAATTGAACAAAATTGTGACTGATCGTCAAATTGGATTTTTTAAAG
GGCTCTCTTTCGTTTCCTTCGGGGAGTTGTTAAGTGCTATTCTTCTTCCC
TTCCTCCATCCCTCCTTTCCCTGCCTGCCTTTTGATGCGATGGGTGGGAG
GGGCCCTTGGGTATGTCACGGGAAAAGAGGGAGGGAGGGAGGGAGGGAGG
GAGCACAGGTGGATCCTATCCTATGGTGTGTATATATAGAGGCATATATA
GCAAGAAGGAATCAAAGGGAATAAAGGAGGAACAGAAAGAAGGAGGGAAA
GAGAAAAGGGGGGTTTCTGCAGGAGCAGCAGGTCTGCGGCAGTGGCACAG
TAGGAGAGAGATGAGGAGGATAACACGTGCGCGACAAGAACGAAAGGAGG
AAGAGGTGAAGGGAAATAGGGTAGGGGAAGCAGAGCCATTAATAATGAGA
AGCAAAACATGCGAAAGAAGAATGAAGAAAATTGTCGCACA
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protein sequence of NO14G00620.3

>NO14G00620.3-protein ID=NO14G00620.3-protein|Name=NO14G00620.3|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MIPRAPATSASPQSLSLLVLLLALLHTTITTAFLLPHPSTSPTRQQQVSL
SSLSPFSLRKASLAAKGFGFGKGQSAQRNGTNEGEQGPELLYYHQEKDST
IDSTTQFLRFNTKPAGSQAPPGMRVFDRVLDFPCVFNIKVGRERRREGGE
GSEGRRKEDGKRFRALFNSVFPPCRASCVYVIIQSYQYFVLYKELIDPIY
L*
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mRNA from alignment at chr14:236164..238314+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00620.3 ID=NO14G00620.3|Name=NO14G00620.3|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at chr14:236164..238314+ (Nannochloropsis oceanica)
ACAGACCCACCAACGCATCAGCAATGATTCCAAGGGCTCCCGCCACTAGC
GCCAGCCCTCAATCACTATCTCTTCTCGTCCTCCTCCTCGCCCTCCTTCA
CACTACCATCACCACGGCCTTTCTCCTCCCTCATCCCTCCACCAGCCCCA
CTCGTCAGCAGCAGGTGTCGCTCTCATCCTTGTCTCCTTTCTCCTTGCGG
AAAGCCTCGCTGGCGGCCAAGGTACGTTCGTTTTTACTATAATTCCCTTG
CCCCCCCTCCCGCCCCCTCCCCCCCCCTCCCTCGTCCCTTCCTTCCTGGC
TCCCTCCCATCTTCACCCTTGCGTGTGCTGTCCCTTTCACACCTCTCTGA
TGAATGCTGCCCCAGCACTGTAGACGACCGGTGTGTGAGCTCCTTTTTTT
CTTCTTTGTGGGTATGTAAACACACCAACCCATCCGTCCGTCCGTCCCTC
CCTTCCTCCCCACGTCCTTCCCTTGCTTCCTCCCTCCCTCCATTAGGGCT
TTGGTTTTGGCAAAGGACAGAGCGCGCAGCGAAACGGCACGAACGAGGGT
GAGCAAGGACCGGAGCTGTTGTACTACCACCAGGAGAAGGTGAGGGACGG
AGAGAGGAAGGGAGGGAGAATGATCGGAAGCAACGATTAGGAGTATGGAT
AGGGGCTGCATGACTATCGATTGAATGAGAGGAAATGGAGGATATGCATT
GAAAAGGAAGAAGGAGGAAAAGAAATGAGATAAAGACTGATTTAAAATCA
AAATCACACGCAGGGATAAATCGTACACTCAACCCTCCCTCCCTCCCTCC
CTACTCCCTCCCTCCCTCTCTCAGGACTCTACCATTGACTCCACCACTCA
ATTTTTAAGGTTTAACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGGGA
TGCGGGTCTTTGATCGCGTCCTGGATTTTCCATGTGTTTTCAACATAAAG
GTGGGGAGGGAGAGGAGGAGGGAGGGAGGGGAGGGAAGCGAGGGAAGGAG
GAAGGAGGATGGGAAACGATTTCGCGCACTTTTCAACTCAGTCTTTCCTC
CATGTCGTGCCTCTTGTGTATATGTTATAATTCAATCATATCAATATTTT
GTTCTATACAAAGAGCTGATAGATCCAATTTATTTATAGGTAATGGGGGT
CATATGCATCTGTAATAATATTTCAGGTATGTTGCTGATTGATACGTACG
TACGCCATGTTTTCTATATACATAGGTGATAGGTCAGCCGGCGGAGAATG
ATGCAGGCAGCTTTGATAGGGACATGGTGGAGCTCGTGGGCCAGGTACGA
TATTGGCGCCGGATTTATTTTCAATTACATTTTTTTTTTCTCTAATATAA
ATTGATAACGAACGCTATTTGCATCGCCGATTCCTCCCAGGACACCAGCA
GTGGAAAATACTATAGCCTTACCATCCTCCCTTCCCTCCCTCCCTGCCTA
GGTCACCGGCGCCCCTCCCTCTGACATTGTGTACTCTTCTCGTGACACCA
GCAGTGGCAAATACCGCAGCCTCACTATCCATGCCCCGGTCAAGAGCGCT
GATGAACTTTATGAGATCTACGAAAAAGTCGATTTAGACCCTAGGGTAAA
GTTTAAGTTCTGAACAAGGCTGCTTCGTCGTATCCCTCCCTCCCTCCCTC
CCTCCTTCCCTCCCTAATTGAACAAAATTGTGACTGATCGTCAAATTGGA
TTTTTTAAAGGGCTCTCTTTCGTTTCCTTCGGGGAGTTGTTAAGTGCTAT
TCTTCTTCCCTTCCTCCATCCCTCCTTTCCCTGCCTGCCTTTTGATGCGA
TGGGTGGGAGGGGCCCTTGGGTATGTCACGGGAAAAGAGGGAGGGAGGGA
GGGAGGGAGGGAGCACAGGTGGATCCTATCCTATGGTGTGTATATATAGA
GGCATATATAGCAAGAAGGAATCAAAGGGAATAAAGGAGGAACAGAAAGA
AGGAGGGAAAGAGAAAAGGGGGGTTTCTGCAGGAGCAGCAGGTCTGCGGC
AGTGGCACAGTAGGAGAGAGATGAGGAGGATAACACGTGCGCGACAAGAA
CGAAAGGAGGAAGAGGTGAAGGGAAATAGGGTAGGGGAAGCAGAGCCATT
AATAATGAGAAGCAAAACATGCGAAAGAAGAATGAAGAAAATTGTCGCAC
A
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Coding sequence (CDS) from alignment at chr14:236164..238314+

>NO14G00620.3 ID=NO14G00620.3|Name=NO14G00620.3|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr14:236164..238314+ (Nannochloropsis oceanica)
ATGATTCCAAGGGCTCCCGCCACTAGCGCCAGCCCTCAATCACTATCTCT
TCTCGTCCTCCTCCTCGCCCTCCTTCACACTACCATCACCACGGCCTTTC
TCCTCCCTCATCCCTCCACCAGCCCCACTCGTCAGCAGCAGGTGTCGCTC
TCATCCTTGTCTCCTTTCTCCTTGCGGAAAGCCTCGCTGGCGGCCAAGGG
CTTTGGTTTTGGCAAAGGACAGAGCGCGCAGCGAAACGGCACGAACGAGG
GTGAGCAAGGACCGGAGCTGTTGTACTACCACCAGGAGAAGGACTCTACC
ATTGACTCCACCACTCAATTTTTAAGGTTTAACACCAAGCCCGCCGGCTC
TCAAGCGCCTCCAGGGATGCGGGTCTTTGATCGCGTCCTGGATTTTCCAT
GTGTTTTCAACATAAAGGTGGGGAGGGAGAGGAGGAGGGAGGGAGGGGAG
GGAAGCGAGGGAAGGAGGAAGGAGGATGGGAAACGATTTCGCGCACTTTT
CAACTCAGTCTTTCCTCCATGTCGTGCCTCTTGTGTATATGTTATAATTC
AATCATATCAATATTTTGTTCTATACAAAGAGCTGATAGATCCAATTTAT
TTATAG
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Synonyms
Publications