NO14G00440, NO14G00440 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO14G00440 vs. NCBI_GenBank
Match: EWM21361.1 (hypothetical protein Naga_100666g2 [Nannochloropsis gaditana]) HSP 1 Score: 211.5 bits (537), Expect = 7.400e-51 Identity = 104/237 (43.88%), Postives = 156/237 (65.82%), Query Frame = 0
Query: 140 FMKAWQEVGSGGVDRTRVIQSMRARQRWSVVAGCDVSWGIGAQLRKIMKITPLDLKDVVLLSWGPTWAHQKAKATDELVSSTALAEEVRTSEEYRALVQAYGQGTAMYVEVVDGDMAAQVTNTAFDHLLDGRGKMESRVLIHRMMPMLLLGQLVAPEDRESFYDG-VMCFFVPSREPKSTFFLKLFAGSGDIRLCIVSFRTVQIGHWRGSLLLVELAPDSRSLTTQPKRNQIVDSFR 376
F K +E GS G+DR RVI+ MR Q S++ G DV+WG+ ++ + M I+ +D++D ++ GPT + +K +A +E+ L +EVRT +Y+ L + + ++ ++ G+ QVTN AFD +++G G++ S +HR +LLL QLVAP+DR +F++G + FVPSR KSTF LK F G GDIRLCIVSFR V++GH G +L E AP S+ LT++P RNQ++D+FR
Sbjct: 3 FYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLTSRPHRNQVIDTFR 239
BLAST of NO14G00440 vs. NCBI_GenBank
Match: XP_005852496.1 (hypothetical protein NGA_0710100 [Nannochloropsis gaditana CCMP526] >EKU23335.1 hypothetical protein NGA_0710100 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 113.6 bits (283), Expect = 2.100e-21 Identity = 75/230 (32.61%), Postives = 127/230 (55.22%), Query Frame = 0
Query: 46 FRLSLRCCPQPPRLPRTSTGKSARTTSSSIS-AMIPGSSSRSRNESVYSTVSSMAELEEKKEAD----SRLLQSQPISFIDLAFARSDPRDLSVTYMASFMKAWQEVGSGGVDRTRVIQSMRARQRWSVVAGCDVSWGIGAQLRKIMKITPLDLKDVVLLSWGPTWAHQKAKATDELVSSTALAEEVRTSEEYRALVQAYGQGTAMYVEVVDGDMAAQVTNTAFDHLLDG 271
FRLSLR + P++S+ S R S +S A G+ + +++ ++ S+ + +E + A+ R Q +S +LA AR +P+ LS Y+ F K +E GS G+DR RVI+ MR Q SV+ G DV+WG+ ++ + M I+ +D++D ++ GPT + +K +A +E+ L +EVRT +Y+ L + + ++ ++ G+ QVTN AFD G
Sbjct: 24 FRLSLR------KPPKSSSSCSNRKRSRKVSEAAADGALGAAESDASLASDSTGSSVEGTEHAEFRRSPRRQQLLRLSLTELALARHNPQRLSAEYVMCFYKVRREFGSEGIDRRRVIECMRIWQHLSVLVGGDVTWGMADKVGRSMGISAVDVEDTASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQDESVPTFLGLLAGERLVQVTNAAFDRAPGG 247
BLAST of NO14G00440 vs. NCBI_GenBank
Match: EWM30665.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 99.0 bits (245), Expect = 5.400e-17 Identity = 90/359 (25.07%), Postives = 158/359 (44.01%), Query Frame = 0
Query: 27 CTRCRDVRAACSG-YPCQRCFRLSLRCCPQPPR-LPRTSTGKSARTTSSSISAMIPGSSSRSRNESVYSTVSSMAELEEKKEADSRL-----LQSQPISFIDLAFARSDPRDLSVTYMASFM--KAWQEVGSGGVDRTRVIQSMRARQRW---SVVAGCDVSWGIGAQLRKIMKITPLDLKDV--VLLSWGPTWAHQKAKATDELVSSTALAEEVRTSEEYRALVQAYGQGTAMYVEV-VDGDMAAQVTNTAFDHLLDGRGKMESRVLIHRMMPMLLLGQLVAPEDR--------ESFYDGVMCFFVPSREPKSTFFLKLFAGSGDIRLCIVSFRTVQIGHWRGSLLLVELAPDSRSLT 363
C RCR ++ C+G PC RCF LSL C PQ PR + + R S + + S++ S + KK+ + L ++ ++L F R DPR L+ Y+ S M K W E + R + W S V G D SWG+ ++ ++ +P+D +D + L + + ++++ + V++ L +++ ++AL+ TA+++ + +VTN AFD G +M + +++ + MP +L LV+PEDR E+ G + + E + T KL G+I+L +V R + + +E P S +T
Sbjct: 63 CMRCRKLKVHCTGSLPCLRCFHLSLVCRPQVPRPYKGNDSAEDCRCPSEKVK-----RARGSKHSSCTGVRKRGGDQRNKKDVEDALAIAMRAETDRTILLELIFDRMDPRPLAGIYLDSIMEVKTWDEKSKAALSTLRTSWFANLIRTWWLHSTVVGADTSWGMAREVALLLNFSPIDFEDTERLHLDYPLSVMRKQSEKFRDFVANGML--QIQQHPAFKALLAEVPPSTAIHLTCNTPNGLMLEVTNDAFDTYFRGADRMYNDIVLRKTMPCILYLGLVSPEDRREWTRFMIEAVSKGPL---NANGEWRKTQIFKLVCTEGNIQLFLVKARFLPSVGTGSVAITLEPCPRSNHVT 411
BLAST of NO14G00440 vs. NCBI_GenBank
Match: EWM30609.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 65.5 bits (158), Expect = 6.600e-7 Identity = 78/327 (23.85%), Postives = 126/327 (38.53%), Query Frame = 0
Query: 27 CTRCRDVRAACSG-YPCQRCFRLSLRCC-PQPPRLPRTSTGKSARTTSSSISAMIPGSSSRSRNESVYSTVSSMAELEEKKEADSRLLQSQPISFIDLAFARSDPRDLSVTYMASFMKAWQEVGSGGV-------------DRTRVIQSMRARQRWSVVAGCDVSWGIGAQLRKIMKITPLDL---KDVVLLSWGPTWAHQKAK-----ATDELVSSTALAEEVRTSEEYRALVQAYGQGTAMYVEVVDGDMAAQVTNTAFDHLLDGRGKMESRVLIHRMMPMLLLGQLVAPEDRESFYDGVM--CFFVPSREPKSTFFLKLFAGSG 329
C CR+ + C G +PC RC+ CC PQ L + +P V+ + E EEK++ + S P ++ L F RS P+ L ++ +F + + E GG DR + ++ +R Q S G DV+ GI L + ++T +L D + G AH ++ A + L S A + + V DG + V N AFD L + + + R +P+LL L+ P+DR ++ GV+ F P P +T + + G G
Sbjct: 125 CQLCRESKTKCDGAFPCSRCWNRMCVCCRPQQHTLESVAPSPXXXXXXXXXXXXLP------------EEVTDLLE-EEKQDEAMEVAGSTP--YVHLVFLRSRPQPLVEVFLRTFGEMYLEEQRGGARAGGEGGRDGRGFDRGKAVRLLRCWQERSTYVGTDVTHGILPALTGLFQVTGEELGEGGDKEGGTEGGAGAHPQSTEAMLVAAERLRGSWAXXXXXXXXXXXXXXXXXXXXXXXVLLAVSDGTLLHWVGNAAFDRLFLSVAGLLNESMARRRLPILLFAALLHPQDRPVWFRGVIRALFTSPGPAPCTTGLVGEWEGDG 436 The following BLAST results are available for this feature:
BLAST of NO14G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO14G00440 ID=NO14G00440|Name=NO14G00440|organism=Nannochloropsis oceanica|type=gene|length=2636bpback to top protein sequence of NO14G00440.2 >NO14G00440.2-protein ID=NO14G00440.2-protein|Name=NO14G00440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=523bpback to top protein sequence of NO14G00440.1 >NO14G00440.1-protein ID=NO14G00440.1-protein|Name=NO14G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bpback to top Synonyms
Publications
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