NO14G00440.2, NO14G00440.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00440.2
Unique NameNO14G00440.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2539
Alignment locationchr14:172006..174641 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:172006..174641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00440.2 vs.
Match: EWM21361.1 (hypothetical protein Naga_100666g2 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 1.200e-52
Identity = 162/506 (32.02%), Postives = 250/506 (49.41%), Query Frame = 0 
Query:   63 FMKAWQEVGSGGVDRTRVIQSMRARQRWSVVAGCDVSWGIGAQLRKIMKITPLDLKDVVLLSWGPTWAHQKAKATDELVSSTALAEEVRTSEEYRALVQAYGQGTAMYVEVVDGDMAAQVTNTAFDHLLDGRGKMESRVLIHRMMPMLLLGQLVAPEDRESFYDG-VMCFFVPSREPKSTFFLKLFAGSGDIRLCIVSFRTVQIGHWRGSLLLVELAPDSRSLTTQPKRNQIVDSFR-------------APRSCSLSSLSPSFGRRAPLPYFSSQSLAPLSVEEEQQHMGKMWGEHAEERR----QEAWQRATTMQGDGAEVNASTAEEGGGVGERGRRREEGGREEERRTAGVYAFPGLACITLSANENQMRGLLKGAVERQSLFVTGRAPTSLHQQAFG-----------PGNSADGKGARGKLGRTVDLQRRKQEERDSKDLAASNSGE-----------TTGVVG--------EEDDELDAVLANAVGPGLDDVVMSQVLN 521
            F K  +E GS G+DR RVI+ MR  Q  S++ G DV+WG+  ++ + M I+ +D++D   ++ GPT + +K +A +E+     L +EVRT  +Y+ L +   +    ++ ++ G+   QVTN AFD +++G G++ S   +HR   +LLL QLVAP+DR +F++G +   FVPSR  KSTF LK F G GDIRLCIVSFR V++GH  G  +L E AP S+ LT++P RNQ++D+FR             A  S S+S  S S  R  P P   S+                      E RR     +AW +  ++ GD A +  ++A       ER     EGG  E R   G +  P LAC+             + AV  +     G+   +L  +  G            G  A+G+G + +        + K+   DS  ++ S++             + G +G         ED+ LDA LA+A+GP L   ++++V +
Sbjct:    3 FYKVRREFGSEGIDRRRVIECMRIWQHLSILVGGDVTWGMADKVGRSMGISAVDVEDNASVALGPTRSRRKGRAQEEVAILVRLVDEVRTMPDYKILARTQHESVPTFLGLLAGERLVQVTNAAFDRMVEGAGRIMSSAFVHRTTCILLLAQLVAPDDRSTFFEGFIQALFVPSRCFKSTFLLKWFQGDGDIRLCIVSFRPVKVGHLSGVQILFEAAPQSKRLTSRPHRNQVIDTFRRHDTPSPGPSPSAASSSSSISLHSESGARPRPKPRVPSE-------------------PGLENRRFGCSPDAWWQ-LSVPGDPASMPNTSAARRSLEIER-----EGG--EGRAGRGSFCIPALACLPEPCPPRS-----EAAVRPEGGTKVGKGDETLLPRPLGRGVPVLIPTKEGGGQAEGEGGQARASEGFAEGKMKEGRHDSSAMSTSSTTSLGDVCDGGAEASAGFLGVPDPLADEAEDNLLDAALASAIGPTLTPELLNEVFD 476
The following BLAST results are available for this feature:
BLAST of NO14G00440.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21361.11.200e-5232.02hypothetical protein Naga_100666g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00440NO14G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00440.2NO14G00440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00440.2.cds1NO14G00440.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00440.2 ID=NO14G00440.2|Name=NO14G00440.2|organism=Nannochloropsis oceanica|type=mRNA|length=2539bp
CGGATTGCAATTAATATTTCATTGCCTCTTGTGACACCGGGAGAAAACAA
GGGGGTCACTGACGCAATTTCCACTGAGGTGACTTATCGCCATTGTGCTT
GAATATATTTTGCGGTGAAACGTCGAAAGCCACCAATCTCCCACTGTAAG
TCCTTGTTCCAATCCTGTAGCAGAGAGGCTTGGCCGGAGACGTGTAAGCT
GAGTGGATCTTCGATTTTCGCTTGGAATGGAATAGCAAGACATCGGACGG
GAGCCGACAAAAAATACTGGAGCGCCGTTCGATGCCAGAAGGAGGACAAG
CCTTACATGGCCGCATCGTCGCATTGGAAGCTGTCCCTGGAAAGATCGCG
GGTCAAGGAAGCGCTTAAACTGGTCAGCCGGGTCTGCACCCGCTGCCGTG
ATGTCAGGGTGAGTTTTGCTCTCAGTCATACACCACTGAGTCTGGCGCCA
TGATCACGGGGATGCAATGGCAACGCCCCCAAAAGAGATTAAATGCCTTT
ATATACCTCTCCACCCTGAAATAGGCAGCGTGTTCAGGATACCCCTGCCA
AAGATGTTTTCGGCTTTCCTTACGCTGCTGTCCTCAGCCTCCAAGACTCC
CACGAACTTCTACTGGCAAGAGCGCTCGCACGACCTCAAGCAGCATCAGC
GCCATGATACCCGGCAGCAGCAGCCGTAGTCGGAATGAATCTGTATACTC
CACAGTCTCATCGATGGCAGAGCTCGAGGAGAAGAAGGAGGCGGACTCAA
GATTACTGCAATCGCAGCCAATTTCCTTCATCGACTTGGCGTTCGCACGT
AGCGATCCACGTGATCTAAGTGTTACTTATATGGCCAGTTTTATGAAGGC
ATGGCAAGAAGTAGGGAGTGGTGGTGTAGACCGCACGCGAGTCATCCAGT
CCATGCGGGCGAGGCAGCGGTGGAGCGTCGTGGCGGGGTGCGACGTGAGC
TGGGGCATAGGCGCTCAACTTAGAAAGATAATGAAGATCACGCCCCTGGA
CCTCAAAGATGTTGTCTTGCTTTCGTGGGGTCCAACATGGGCTCATCAGA
AGGCCAAGGCAACAGATGAACTAGTTTCCTCGACCGCCCTGGCTGAAGAG
GTGCGGACTTCGGAGGAGTACCGCGCCTTAGTGCAGGCGTATGGCCAAGG
CACGGCTATGTATGTGGAAGTTGTCGACGGGGATATGGCGGCTCAAGTCA
CCAACACTGCTTTCGATCACTTGCTAGATGGAAGGGGAAAGATGGAAAGC
CGCGTCTTGATACATCGGATGATGCCCATGTTGCTGCTGGGCCAGCTGGT
GGCACCTGAGGATAGGGAATCTTTCTACGACGGTGTTATGTGCTTTTTCG
TGCCGAGCCGAGAACCGAAGAGCACGTTTTTCCTGAAGCTGTTCGCTGGG
AGCGGGGACATCAGGCTCTGCATCGTTTCCTTCCGCACCGTGCAAATAGG
ACATTGGCGCGGTAGCCTATTGTTGGTGGAGTTGGCTCCCGACAGCCGGT
CCCTCACCACCCAGCCAAAGCGCAACCAGATCGTCGACAGCTTCCGCGCC
CCACGTTCCTGCTCTCTTTCGTCTCTCTCGCCCTCCTTCGGACGAAGGGC
GCCATTACCCTACTTTTCATCCCAATCCCTTGCACCGCTGTCGGTGGAAG
AAGAGCAACAACATATGGGCAAGATGTGGGGAGAACATGCAGAGGAAAGG
CGACAAGAAGCGTGGCAGAGGGCCACCACCATGCAAGGGGATGGAGCGGA
AGTGAATGCGAGCACAGCAGAGGAGGGAGGAGGAGTGGGAGAAAGAGGAC
GAAGAAGAGAAGAGGGAGGGAGAGAGGAGGAAAGGAGAACAGCAGGTGTC
TATGCATTTCCCGGCCTGGCTTGTATAACACTGTCAGCGAATGAGAACCA
GATGCGGGGTCTTCTGAAAGGTGCTGTGGAGAGACAAAGCCTCTTCGTCA
CAGGGCGCGCGCCCACGAGCCTCCACCAACAGGCGTTCGGACCGGGTAAT
AGTGCTGATGGAAAGGGTGCAAGGGGAAAGTTGGGCAGAACGGTCGACTT
GCAAAGGAGAAAGCAGGAAGAAAGGGATAGCAAGGATCTTGCTGCCAGCA
ACAGCGGCGAGACGACGGGCGTGGTCGGGGAGGAGGACGACGAACTGGAC
GCCGTGCTGGCCAATGCGGTAGGTCCGGGGTTGGATGACGTGGTTATGAG
CCAGGTATTAAATGACTGTTGATAGGTGGTAGTGGTAGGCGGCTTTTGTA
GTAGCACTAGCGGCATATGATGGGAATGAGAAAGGACAATTAGGAGCGGA
ATAGGAGCCAGAGGAGGTGGGGGGTGGATATATTACATTGGCTTTACGAG
ACTCACAATTGAAAGTATATAGGAATAGGATATGTCGCTGTGACATGCTA
TCGAAGTGTAGCGTGCCTTTCGTAACATAAAACTAAAATCACTGAGACAA
GGCAAGCCGTGAAAATAAAGCAATACGTTATAACTAGTTGGAGCCCGTCG
AAGTCTGAACCAAAGAATGTAAAACTTAAGTATGCACAG
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protein sequence of NO14G00440.2

>NO14G00440.2-protein ID=NO14G00440.2-protein|Name=NO14G00440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MIPGSSSRSRNESVYSTVSSMAELEEKKEADSRLLQSQPISFIDLAFARS
DPRDLSVTYMASFMKAWQEVGSGGVDRTRVIQSMRARQRWSVVAGCDVSW
GIGAQLRKIMKITPLDLKDVVLLSWGPTWAHQKAKATDELVSSTALAEEV
RTSEEYRALVQAYGQGTAMYVEVVDGDMAAQVTNTAFDHLLDGRGKMESR
VLIHRMMPMLLLGQLVAPEDRESFYDGVMCFFVPSREPKSTFFLKLFAGS
GDIRLCIVSFRTVQIGHWRGSLLLVELAPDSRSLTTQPKRNQIVDSFRAP
RSCSLSSLSPSFGRRAPLPYFSSQSLAPLSVEEEQQHMGKMWGEHAEERR
QEAWQRATTMQGDGAEVNASTAEEGGGVGERGRRREEGGREEERRTAGVY
AFPGLACITLSANENQMRGLLKGAVERQSLFVTGRAPTSLHQQAFGPGNS
ADGKGARGKLGRTVDLQRRKQEERDSKDLAASNSGETTGVVGEEDDELDA
VLANAVGPGLDDVVMSQVLNDC*
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mRNA from alignment at chr14:172006..174641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00440.2 ID=NO14G00440.2|Name=NO14G00440.2|organism=Nannochloropsis oceanica|type=mRNA|length=2636bp|location=Sequence derived from alignment at chr14:172006..174641- (Nannochloropsis oceanica)
CGGATTGCAATTAATATTTCATTGCCTCTTGTGACACCGGGAGAAAACAA
GGGGGTCACTGACGCAATTTCCACTGAGGTGACTTATCGCCATTGTGCTT
GAATATATTTTGCGGTGAAACGTCGAAAGCCACCAATCTCCCACTGTAAG
TCCTTGTTCCAATCCTGTAGCAGAGAGGCTTGGCCGGAGACGTGTAAGCT
GAGTGGATCTTCGATTTTCGCTTGGAATGGAATAGCAAGACATCGGACGG
GAGCCGACAAAAAATACTGGAGCGCCGTTCGATGCCAGAAGGAGGACAAG
CCTTACATGGCCGCATCGTCGCATTGGAAGCTGTCCCTGGAAAGATCGCG
GGTCAAGGAAGCGCTTAAACTGGTCAGCCGGGTCTGCACCCGCTGCCGTG
ATGTCAGGGTGAGTTTTGCTCTCAGTCATACACCACTGAGTCTGGCGCCA
TGATCACGGGGATGCAATGGCAACGCCCCCAAAAGAGATTAAATGCCTTT
ATATACCTCTCCACCCTGAAATAGGCAGCGTGTTCAGGATACCCCTGCCA
AAGGTACGTCTGTTTAGAGACCATAAAGGTGCTCTTGGCAGAAACCACCA
ATTGACTCTTCCATCTTCTACCTCCATTCTTCTGTTCCACATGCGTAAAG
ATGTTTTCGGCTTTCCTTACGCTGCTGTCCTCAGCCTCCAAGACTCCCAC
GAACTTCTACTGGCAAGAGCGCTCGCACGACCTCAAGCAGCATCAGCGCC
ATGATACCCGGCAGCAGCAGCCGTAGTCGGAATGAATCTGTATACTCCAC
AGTCTCATCGATGGCAGAGCTCGAGGAGAAGAAGGAGGCGGACTCAAGAT
TACTGCAATCGCAGCCAATTTCCTTCATCGACTTGGCGTTCGCACGTAGC
GATCCACGTGATCTAAGTGTTACTTATATGGCCAGTTTTATGAAGGCATG
GCAAGAAGTAGGGAGTGGTGGTGTAGACCGCACGCGAGTCATCCAGTCCA
TGCGGGCGAGGCAGCGGTGGAGCGTCGTGGCGGGGTGCGACGTGAGCTGG
GGCATAGGCGCTCAACTTAGAAAGATAATGAAGATCACGCCCCTGGACCT
CAAAGATGTTGTCTTGCTTTCGTGGGGTCCAACATGGGCTCATCAGAAGG
CCAAGGCAACAGATGAACTAGTTTCCTCGACCGCCCTGGCTGAAGAGGTG
CGGACTTCGGAGGAGTACCGCGCCTTAGTGCAGGCGTATGGCCAAGGCAC
GGCTATGTATGTGGAAGTTGTCGACGGGGATATGGCGGCTCAAGTCACCA
ACACTGCTTTCGATCACTTGCTAGATGGAAGGGGAAAGATGGAAAGCCGC
GTCTTGATACATCGGATGATGCCCATGTTGCTGCTGGGCCAGCTGGTGGC
ACCTGAGGATAGGGAATCTTTCTACGACGGTGTTATGTGCTTTTTCGTGC
CGAGCCGAGAACCGAAGAGCACGTTTTTCCTGAAGCTGTTCGCTGGGAGC
GGGGACATCAGGCTCTGCATCGTTTCCTTCCGCACCGTGCAAATAGGACA
TTGGCGCGGTAGCCTATTGTTGGTGGAGTTGGCTCCCGACAGCCGGTCCC
TCACCACCCAGCCAAAGCGCAACCAGATCGTCGACAGCTTCCGCGCCCCA
CGTTCCTGCTCTCTTTCGTCTCTCTCGCCCTCCTTCGGACGAAGGGCGCC
ATTACCCTACTTTTCATCCCAATCCCTTGCACCGCTGTCGGTGGAAGAAG
AGCAACAACATATGGGCAAGATGTGGGGAGAACATGCAGAGGAAAGGCGA
CAAGAAGCGTGGCAGAGGGCCACCACCATGCAAGGGGATGGAGCGGAAGT
GAATGCGAGCACAGCAGAGGAGGGAGGAGGAGTGGGAGAAAGAGGACGAA
GAAGAGAAGAGGGAGGGAGAGAGGAGGAAAGGAGAACAGCAGGTGTCTAT
GCATTTCCCGGCCTGGCTTGTATAACACTGTCAGCGAATGAGAACCAGAT
GCGGGGTCTTCTGAAAGGTGCTGTGGAGAGACAAAGCCTCTTCGTCACAG
GGCGCGCGCCCACGAGCCTCCACCAACAGGCGTTCGGACCGGGTAATAGT
GCTGATGGAAAGGGTGCAAGGGGAAAGTTGGGCAGAACGGTCGACTTGCA
AAGGAGAAAGCAGGAAGAAAGGGATAGCAAGGATCTTGCTGCCAGCAACA
GCGGCGAGACGACGGGCGTGGTCGGGGAGGAGGACGACGAACTGGACGCC
GTGCTGGCCAATGCGGTAGGTCCGGGGTTGGATGACGTGGTTATGAGCCA
GGTATTAAATGACTGTTGATAGGTGGTAGTGGTAGGCGGCTTTTGTAGTA
GCACTAGCGGCATATGATGGGAATGAGAAAGGACAATTAGGAGCGGAATA
GGAGCCAGAGGAGGTGGGGGGTGGATATATTACATTGGCTTTACGAGACT
CACAATTGAAAGTATATAGGAATAGGATATGTCGCTGTGACATGCTATCG
AAGTGTAGCGTGCCTTTCGTAACATAAAACTAAAATCACTGAGACAAGGC
AAGCCGTGAAAATAAAGCAATACGTTATAACTAGTTGGAGCCCGTCGAAG
TCTGAACCAAAGAATGTAAAACTTAAGTATGCACAG
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Coding sequence (CDS) from alignment at chr14:172006..174641-

>NO14G00440.2 ID=NO14G00440.2|Name=NO14G00440.2|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr14:172006..174641- (Nannochloropsis oceanica)
ATGATACCCGGCAGCAGCAGCCGTAGTCGGAATGAATCTGTATACTCCAC
AGTCTCATCGATGGCAGAGCTCGAGGAGAAGAAGGAGGCGGACTCAAGAT
TACTGCAATCGCAGCCAATTTCCTTCATCGACTTGGCGTTCGCACGTAGC
GATCCACGTGATCTAAGTGTTACTTATATGGCCAGTTTTATGAAGGCATG
GCAAGAAGTAGGGAGTGGTGGTGTAGACCGCACGCGAGTCATCCAGTCCA
TGCGGGCGAGGCAGCGGTGGAGCGTCGTGGCGGGGTGCGACGTGAGCTGG
GGCATAGGCGCTCAACTTAGAAAGATAATGAAGATCACGCCCCTGGACCT
CAAAGATGTTGTCTTGCTTTCGTGGGGTCCAACATGGGCTCATCAGAAGG
CCAAGGCAACAGATGAACTAGTTTCCTCGACCGCCCTGGCTGAAGAGGTG
CGGACTTCGGAGGAGTACCGCGCCTTAGTGCAGGCGTATGGCCAAGGCAC
GGCTATGTATGTGGAAGTTGTCGACGGGGATATGGCGGCTCAAGTCACCA
ACACTGCTTTCGATCACTTGCTAGATGGAAGGGGAAAGATGGAAAGCCGC
GTCTTGATACATCGGATGATGCCCATGTTGCTGCTGGGCCAGCTGGTGGC
ACCTGAGGATAGGGAATCTTTCTACGACGGTGTTATGTGCTTTTTCGTGC
CGAGCCGAGAACCGAAGAGCACGTTTTTCCTGAAGCTGTTCGCTGGGAGC
GGGGACATCAGGCTCTGCATCGTTTCCTTCCGCACCGTGCAAATAGGACA
TTGGCGCGGTAGCCTATTGTTGGTGGAGTTGGCTCCCGACAGCCGGTCCC
TCACCACCCAGCCAAAGCGCAACCAGATCGTCGACAGCTTCCGCGCCCCA
CGTTCCTGCTCTCTTTCGTCTCTCTCGCCCTCCTTCGGACGAAGGGCGCC
ATTACCCTACTTTTCATCCCAATCCCTTGCACCGCTGTCGGTGGAAGAAG
AGCAACAACATATGGGCAAGATGTGGGGAGAACATGCAGAGGAAAGGCGA
CAAGAAGCGTGGCAGAGGGCCACCACCATGCAAGGGGATGGAGCGGAAGT
GAATGCGAGCACAGCAGAGGAGGGAGGAGGAGTGGGAGAAAGAGGACGAA
GAAGAGAAGAGGGAGGGAGAGAGGAGGAAAGGAGAACAGCAGGTGTCTAT
GCATTTCCCGGCCTGGCTTGTATAACACTGTCAGCGAATGAGAACCAGAT
GCGGGGTCTTCTGAAAGGTGCTGTGGAGAGACAAAGCCTCTTCGTCACAG
GGCGCGCGCCCACGAGCCTCCACCAACAGGCGTTCGGACCGGGTAATAGT
GCTGATGGAAAGGGTGCAAGGGGAAAGTTGGGCAGAACGGTCGACTTGCA
AAGGAGAAAGCAGGAAGAAAGGGATAGCAAGGATCTTGCTGCCAGCAACA
GCGGCGAGACGACGGGCGTGGTCGGGGAGGAGGACGACGAACTGGACGCC
GTGCTGGCCAATGCGGTAGGTCCGGGGTTGGATGACGTGGTTATGAGCCA
GGTATTAAATGACTGTTGA
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Synonyms
Publications