NO14G00280, NO14G00280 (gene) Nannochloropsis oceanica

Overview
NameNO14G00280
Unique NameNO14G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length947
Alignment locationchr14:95942..96888 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:95942..96888 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G00280 vs. NCBI_GenBank
Match: XP_005854103.1 (hypothetical protein NGA_0470100 [Nannochloropsis gaditana CCMP526] >EKU22259.1 hypothetical protein NGA_0470100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.9 bits (185), Expect = 1.400e-10
Identity = 66/175 (37.71%), Postives = 91/175 (52.00%), Query Frame = 0 
Query:   16 EQVKLAYWRQGEVLGRALEAVAKLGYSEAQYD-----CSLPPSLLSSPSC--SETDWRMTSLRSIMRLEEEAKTYLKDNPCAPPVPSSSAQGEEEGDDGWVEELEEDQEGGNEEGQELKMEDVERVD--------EWLEDREEKGKELYGGKEISPALKNRPNADAWKDGDGPAT 176
            E  + AYW Q E+LGR LE +  L YSEAQYD     CS P S  +SP C  ++ +WR  SLRSIMRLE EAK  L++NP A  VPS   +G  EG +   E  EE+ + G ++  E+ + + E+++        EW  D+  +  E     E    ++ R    AW   D   T
Sbjct:    6 EDKQWAYWEQRELLGRVLEDIVNLAYSEAQYDGAIGACS-PASPSTSPICLLNDAEWRKESLRSIMRLEREAKACLRNNPLAMAVPSWE-EGIREG-ELMEEPSEEEMQEGEQDVDEVLLSEGEKMEGALASENREWGRDKVSEDDETREEGE----MEEREMMMAWSKEDKEVT 173
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BLAST of NO14G00280 vs. NCBI_GenBank
Match: EWM24768.1 (hypothetical protein Naga_100255g5 [Nannochloropsis gaditana])

HSP 1 Score: 64.3 bits (155), Expect = 4.300e-7
Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 0 
Query:   27 EVLGRALEAVAKLGYSEAQYD-----CSLPPSLLSSPSC--SETDWRMTSLRSIMRLEEEAKTYLKDNPCAPPVPSSSAQGEEEGDDGWVEELEEDQEGGNEEGQELKMEDVERVDEWLEDREEKGKE 148
            E+LGR LE +  L YSEAQYD     CS P S  +SP C  ++ +WR  SL+SIMRLE EAK YL++NP A   PS   +G  EG+       EE QEG  +  + L  E  +       +  E G++
Sbjct:  157 ELLGRVLEDIVNLAYSEAQYDGGIGACS-PASPSTSPICLLNDAEWRKESLQSIMRLEREAKAYLRNNPLAMAAPSWE-EGIREGELMEEPSEEEMQEGEQDVDEVLLSEGEKMAGALASENREWGRD 282
The following BLAST results are available for this feature:
BLAST of NO14G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854103.11.400e-1037.71hypothetical protein NGA_0470100 [Nannochloropsis ... [more]
EWM24768.14.300e-741.41hypothetical protein Naga_100255g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00280.1NO14G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100255g5gene5713Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00280.1NO14G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00280 ID=NO14G00280|Name=NO14G00280|organism=Nannochloropsis oceanica|type=gene|length=947bp
ATGGAGGCTTTGAAGGAGCGACTGAGAAAGGCAGAGGGCATGACGGAGCA
AGTGAAACTCGCTTACTGGAGGCAGGGAGAGGTGTTGGGAAGAGCGCTGG
AGgtaagaagagaacgcgggggaaggagagaccaaacgaggcagggaagg
gagagttgcttgtggtacatgcgtaaatcttttcatcttctggggtgatc
actctttcacgcccgccctccctccctctcttatctccaccctttgatta
gGCGGTCGCTAAACTGGGCTACTCGGAAGCGCAGTACGACTGCTCCCTTC
CCCCCTCCCTTTTGTCCTCCCCCTCCTGCAGCGAAACGGACTGGAGAATG
ACGTCCCTCCGGTCCATCATGCGCTTGGAGGAGGAAGCAAAGgtgaggaa
aggagggaagaagggggtaaaggaggtgggggaagggaggcccgacgacg
ttaccagcccatatttaatgagagaggaaggagagagtggatagatgcat
ggcttgtaggcgcatgtttttaaagttgttgctcttacctctctctttac
atctccataccttttctaggcctctatctggtgcttgtcgttcatgctga
tccccacccacactcaattttattcgcccgcgcacccacacacgcacacc
catcgctcacagACGTACCTTAAGGATAACCCTTGTGCTCCGCCTGTTCC
GTCGTCATCGGCGCAGGGTGAGGAGGAAGGGGACGATGGATGGGTAGAGG
AGCTGGAGGAGGACCAGGAGGGCGGGAATGAGGAGGGACAAGAATTGAAG
ATGGAGGATGTGGAGAGAGTGGACGAGTGGCTGGAGGATCGAGAGGAGAA
GGGAAAGGAGCTCTATGGAGGAAAAGAGATTTCGCCGGCCCTCAAAAATA
GGCCGAACGCGGACGCGTGGAAGGACGGCGATGGCCCCGCCACCTGA
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protein sequence of NO14G00280.1

>NO14G00280.1-protein ID=NO14G00280.1-protein|Name=NO14G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MEALKERLRKAEGMTEQVKLAYWRQGEVLGRALEAVAKLGYSEAQYDCSL
PPSLLSSPSCSETDWRMTSLRSIMRLEEEAKTYLKDNPCAPPVPSSSAQG
EEEGDDGWVEELEEDQEGGNEEGQELKMEDVERVDEWLEDREEKGKELYG
GKEISPALKNRPNADAWKDGDGPAT*
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Synonyms
Publications