NO14G00280.1, NO14G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00280.1
Unique NameNO14G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length528
Alignment locationchr14:95942..96888 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:95942..96888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00280.1 vs.
Match: XP_005854103.1 (hypothetical protein NGA_0470100 [Nannochloropsis gaditana CCMP526]; EKU22259.1 hypothetical protein NGA_0470100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.9 bits (185), Expect = 1.400e-10
Identity = 64/174 (36.78%), Postives = 91/174 (52.30%), Query Frame = 0 
Query:   16 EQVKLAYWRQGEVLGRALEAVAKLGYSEAQYDCSL----PPSLLSSPSC--SETDWRMTSLRSIMRLEEEAKTYLKDNPCAPPVPSSSAQGEEEGDDGWVEELEEDQEGGNEEGQELKMEDVERVD--------EWLEDREEKGKELYGGKEISPALKNRPNADAWKDGDGPAT 176
            E  + AYW Q E+LGR LE +  L YSEAQYD ++    P S  +SP C  ++ +WR  SLRSIMRLE EAK  L++NP A  VPS   +G  EG +   E  EE+ + G ++  E+ + + E+++        EW  D+  +  E     E    ++ R    AW   D   T
Sbjct:    6 EDKQWAYWEQRELLGRVLEDIVNLAYSEAQYDGAIGACSPASPSTSPICLLNDAEWRKESLRSIMRLEREAKACLRNNPLAMAVPSWE-EGIREG-ELMEEPSEEEMQEGEQDVDEVLLSEGEKMEGALASENREWGRDKVSEDDETREEGE----MEEREMMMAWSKEDKEVT 173
The following BLAST results are available for this feature:
BLAST of NO14G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854103.11.400e-1036.78hypothetical protein NGA_0470100 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00280NO14G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00280.1NO14G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00280.1.cds1NO14G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00280.1.cds2NO14G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00280.1.cds3NO14G00280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00280.1 ID=NO14G00280.1|Name=NO14G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=528bp
ATGGAGGCTTTGAAGGAGCGACTGAGAAAGGCAGAGGGCATGACGGAGCA
AGTGAAACTCGCTTACTGGAGGCAGGGAGAGGTGTTGGGAAGAGCGCTGG
AGGCGGTCGCTAAACTGGGCTACTCGGAAGCGCAGTACGACTGCTCCCTT
CCCCCCTCCCTTTTGTCCTCCCCCTCCTGCAGCGAAACGGACTGGAGAAT
GACGTCCCTCCGGTCCATCATGCGCTTGGAGGAGGAAGCAAAGACGTACC
TTAAGGATAACCCTTGTGCTCCGCCTGTTCCGTCGTCATCGGCGCAGGGT
GAGGAGGAAGGGGACGATGGATGGGTAGAGGAGCTGGAGGAGGACCAGGA
GGGCGGGAATGAGGAGGGACAAGAATTGAAGATGGAGGATGTGGAGAGAG
TGGACGAGTGGCTGGAGGATCGAGAGGAGAAGGGAAAGGAGCTCTATGGA
GGAAAAGAGATTTCGCCGGCCCTCAAAAATAGGCCGAACGCGGACGCGTG
GAAGGACGGCGATGGCCCCGCCACCTGA
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protein sequence of NO14G00280.1

>NO14G00280.1-protein ID=NO14G00280.1-protein|Name=NO14G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MEALKERLRKAEGMTEQVKLAYWRQGEVLGRALEAVAKLGYSEAQYDCSL
PPSLLSSPSCSETDWRMTSLRSIMRLEEEAKTYLKDNPCAPPVPSSSAQG
EEEGDDGWVEELEEDQEGGNEEGQELKMEDVERVDEWLEDREEKGKELYG
GKEISPALKNRPNADAWKDGDGPAT*
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mRNA from alignment at chr14:95942..96888+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00280.1 ID=NO14G00280.1|Name=NO14G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=947bp|location=Sequence derived from alignment at chr14:95942..96888+ (Nannochloropsis oceanica)
ATGGAGGCTTTGAAGGAGCGACTGAGAAAGGCAGAGGGCATGACGGAGCA
AGTGAAACTCGCTTACTGGAGGCAGGGAGAGGTGTTGGGAAGAGCGCTGG
AGGTAAGAAGAGAACGCGGGGGAAGGAGAGACCAAACGAGGCAGGGAAGG
GAGAGTTGCTTGTGGTACATGCGTAAATCTTTTCATCTTCTGGGGTGATC
ACTCTTTCACGCCCGCCCTCCCTCCCTCTCTTATCTCCACCCTTTGATTA
GGCGGTCGCTAAACTGGGCTACTCGGAAGCGCAGTACGACTGCTCCCTTC
CCCCCTCCCTTTTGTCCTCCCCCTCCTGCAGCGAAACGGACTGGAGAATG
ACGTCCCTCCGGTCCATCATGCGCTTGGAGGAGGAAGCAAAGGTGAGGAA
AGGAGGGAAGAAGGGGGTAAAGGAGGTGGGGGAAGGGAGGCCCGACGACG
TTACCAGCCCATATTTAATGAGAGAGGAAGGAGAGAGTGGATAGATGCAT
GGCTTGTAGGCGCATGTTTTTAAAGTTGTTGCTCTTACCTCTCTCTTTAC
ATCTCCATACCTTTTCTAGGCCTCTATCTGGTGCTTGTCGTTCATGCTGA
TCCCCACCCACACTCAATTTTATTCGCCCGCGCACCCACACACGCACACC
CATCGCTCACAGACGTACCTTAAGGATAACCCTTGTGCTCCGCCTGTTCC
GTCGTCATCGGCGCAGGGTGAGGAGGAAGGGGACGATGGATGGGTAGAGG
AGCTGGAGGAGGACCAGGAGGGCGGGAATGAGGAGGGACAAGAATTGAAG
ATGGAGGATGTGGAGAGAGTGGACGAGTGGCTGGAGGATCGAGAGGAGAA
GGGAAAGGAGCTCTATGGAGGAAAAGAGATTTCGCCGGCCCTCAAAAATA
GGCCGAACGCGGACGCGTGGAAGGACGGCGATGGCCCCGCCACCTGA
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Coding sequence (CDS) from alignment at chr14:95942..96888+

>NO14G00280.1 ID=NO14G00280.1|Name=NO14G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at chr14:95942..96888+ (Nannochloropsis oceanica)
ATGGAGGCTTTGAAGGAGCGACTGAGAAAGGCAGAGGGCATGACGGAGCA
AGTGAAACTCGCTTACTGGAGGCAGGGAGAGGTGTTGGGAAGAGCGCTGG
AGGCGGTCGCTAAACTGGGCTACTCGGAAGCGCAGTACGACTGCTCCCTT
CCCCCCTCCCTTTTGTCCTCCCCCTCCTGCAGCGAAACGGACTGGAGAAT
GACGTCCCTCCGGTCCATCATGCGCTTGGAGGAGGAAGCAAAGACGTACC
TTAAGGATAACCCTTGTGCTCCGCCTGTTCCGTCGTCATCGGCGCAGGGT
GAGGAGGAAGGGGACGATGGATGGGTAGAGGAGCTGGAGGAGGACCAGGA
GGGCGGGAATGAGGAGGGACAAGAATTGAAGATGGAGGATGTGGAGAGAG
TGGACGAGTGGCTGGAGGATCGAGAGGAGAAGGGAAAGGAGCTCTATGGA
GGAAAAGAGATTTCGCCGGCCCTCAAAAATAGGCCGAACGCGGACGCGTG
GAAGGACGGCGATGGCCCCGCCACCTGA
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Synonyms
Publications