NO14G00260, NO14G00260 (gene) Nannochloropsis oceanica

Overview
NameNO14G00260
Unique NameNO14G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2371
Alignment locationchr14:92085..94455 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrna splicing endonuclease 34-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:92085..94455 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000213tRNA-intron endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: INTERPRO
TermDefinition
IPR036167tRNA_intron_Endo_cat-like_sf
IPR006677tRNA_intron_Endonuc_cat-like
Homology
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BLAST of NO14G00260 vs. NCBI_GenBank
Match: XP_005854102.1 (trna splicing endonuclease 34-like protein [Nannochloropsis gaditana CCMP526] >EKU22258.1 trna splicing endonuclease 34-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 202.6 bits (514), Expect = 3.300e-48
Identity = 114/174 (65.52%), Postives = 122/174 (70.11%), Query Frame = 0 
Query:  420 LRAFASPEERRLRAVYRDLWERGLTIGSGSAYGADFTAYEGDPLAFHSFAAFIVLPADASLSARALSASVRLEQSVVKLLVYAICHDLKEEGEMEREE-----------XXXXXXXXXXXXXXXXXXXXXXXXXGDVGSRAAMTRFGWPRRSRVGGFMIEYMTLRFISVTRRME 583
            +  + S EER LRAVYRDLWERGLTIGSG AYGADFTAYEGDP+AFHSFAA IVLPA + LSARALSASVRLEQSVVKLLVYA+CH  + EGE E  E                                    GDVG+RAA+TRFGWPRRS VGGFMIEYMTLRFISVTRRME
Sbjct:    1 MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCH--RREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 172
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BLAST of NO14G00260 vs. NCBI_GenBank
Match: EWM24772.1 (hypothetical protein Naga_100255g3 [Nannochloropsis gaditana])

HSP 1 Score: 202.6 bits (514), Expect = 3.300e-48
Identity = 114/174 (65.52%), Postives = 122/174 (70.11%), Query Frame = 0 
Query:  420 LRAFASPEERRLRAVYRDLWERGLTIGSGSAYGADFTAYEGDPLAFHSFAAFIVLPADASLSARALSASVRLEQSVVKLLVYAICHDLKEEGEMEREE-----------XXXXXXXXXXXXXXXXXXXXXXXXXGDVGSRAAMTRFGWPRRSRVGGFMIEYMTLRFISVTRRME 583
            +  + S EER LRAVYRDLWERGLTIGSG AYGADFTAYEGDP+AFHSFAA IVLPA + LSARALSASVRLEQSVVKLLVYA+CH  + EGE E  E                                    GDVG+RAA+TRFGWPRRS VGGFMIEYMTLRFISVTRRME
Sbjct:  413 MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCH--RREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584
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BLAST of NO14G00260 vs. NCBI_GenBank
Match: XP_005854101.1 (hypothetical protein NGA_0469900 [Nannochloropsis gaditana CCMP526] >EKU22257.1 hypothetical protein NGA_0469900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 164.5 bits (415), Expect = 1.000e-36
Identity = 112/181 (61.88%), Postives = 126/181 (69.61%), Query Frame = 0 
Query:  142 KEFMSWFPSSAHIATMPL--PVAPSLLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADRLPLRTAHLTDDGTALVWDAATALELRGKHRMLSRSLGMGSIRVSAVQRAVPVALLPPALALGIEEGLLSMATEAPRADTDYFDKRVMDEKTVNAIEE 321
            KEF +WFPSSAHI+T+PL  P +PS  P                                     XXXXXXXXXXXXXXXVA R PLRTAHL+ DGTALVWDAAT LELRGKHR+LSR+LGMGSIRVSAVQRAVPVA++P AL+L ++EG+LSM  EAPRADTDYFDKRV+D   V AIEE
Sbjct:  111 KEFKTWFPSSAHISTVPLLMPFSPSPPP--------------SSTSPSHSRPAPPSLNGDMPLLRXXXXXXXXXXXXXXXVACRTPLRTAHLSKDGTALVWDAATVLELRGKHRVLSRALGMGSIRVSAVQRAVPVAVMPSALSLMVDEGILSMGEEAPRADTDYFDKRVVDAAAVRAIEE 277
The following BLAST results are available for this feature:
BLAST of NO14G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854102.13.300e-4865.52trna splicing endonuclease 34-like protein [Nannoc... [more]
EWM24772.13.300e-4865.52hypothetical protein Naga_100255g3 [Nannochloropsi... [more]
XP_005854101.11.000e-3661.88hypothetical protein NGA_0469900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00260.1NO14G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|31433gene_5595Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100255g3gene5712Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00260.1NO14G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00260 ID=NO14G00260|Name=NO14G00260|organism=Nannochloropsis oceanica|type=gene|length=2371bp
ATGGAAACCGGGGCAACGACAGGCGAAGGGGTAGAAGACATGCGGGGGAA
CAACGCGATGGAGGGTGGGGAGGGTGGGAAGGGTGGGGAGGTAGTCGAAG
GGATGGACGGGGGTGATGTCGTCACGCCACCAGCAGCACCTGGGGACAGC
AAGAACCAGCAACATGACGAAGAGGAGCAGCAGCAGCAGCAGCAGCAGCG
GCAGCAGCAGCAGGAGAAGGAAGAGGAAGAGGCGGATGGACAGCGGCTGC
CCTTCGACAATGCGCGTGGCGTTGATCCCCAGAAGGGAGGGAGAGCGGAG
GAGCAGGCAGACCTGTCGCCGACACCACCAGAAGTAGCAGAAGAGGAAAG
AAGACCAGACAATAAAGGAAAGGAGCATAGAGAAGAGGATGACGCCGAGC
CACCCTTGAAAAAGAAACGCGCCAAGGAGTTTATGTCCTGGTTTCCGTCG
TCGGCCCACATTGCCACTATGCCTCTTCCAGTCGCACCTTCCCTCCTTCC
CTGCCCTTCTCCTTCTCCTCCTCCTCGCCCTCCTCCTCATGCGTCACCTC
TATCCTCCTCCCATACCCTCCCACCATCCTCCAACGACGGATCTCCCCCT
ACTCCCCTCCTTCCCCCTCCTCCTCCTCCTCGTCCCCCGCCACCTGTTGT
AGAGGAAGTGGCCGACCGTCTTCCCCTCCGCACCGCCCATCTCACCGATG
ACGGCACAGCCCTAGTTTGGGACGCAGCCACGGCATTAGAACTACGGGGA
AAGCACCGCATGCTCTCTCGGTCGTTGGGCATGGGTTCCATCCGCGTCTC
GGCCGTGCAGAGGgtgaggagggagggagggagggagggaggggaaggag
cgattgagggaggaagaaaagggtggaaggagggaaggaggggctcacat
taattctacacaattaaagcatcagtaacacatatacgccaaaacatctt
tccctccctccctccctttccctcccacccctcccttcccaagGCGGTTC
CGGTCGCCCTCCTCCCACCGGCCCTAGCCCTTGGCATTGAGGAAGGGCTG
CTCTCAATGGCCACCGAGGCACCTCGCGCCGACACAGACTACTTCGACAA
GCGCGTCATGGACGAGAAGACAGTGAATGCCATCGAGGAGGAAAGGCGAG
AGAGGAAACGgtaggtaggatgagagggaggaagggagagtagtacttct
ggcaggggaaagatggctcacagtctttccctccctccctccctccattc
atccatccatccctccctcgaaagGAAACGCTACGAGTACGAAGTCCAGA
AAGCTCTTGAGCAGCAAGAGGCAGATACAGCAGGAGCGGCAGTAGCAGCA
GCAGAGTCAGCCCCTTTCCCTCCCTCCCTCGCTCCTTCTTCGAATGAAAG
CGGAGATGGAGTATTGTTTATTGCAGCAAGAGAAGGAGGAGGAGGGGAAG
GGGAAAGGGAAAGCGAAGGAGGAAGAAGCGAAGGAGGAGAAGGCAACCTT
CGTTCCTCCCGTCCCACCCGAGAAGCTACGAAGGAGGAAGAGGCGCAGCC
gtccgacaccaccctccctcccatcctccctccctcccttcctcctctcc
tcgccgacggtctgcctattcctgacccccccccgctcctgtccttgcct
acctcgaagccaccgccgccaggcaacaaagaattgcctcccactgcctc
atccctccccctccccctccctccctccctccctccctccctcccctccc
gcttgtccgtcctttgacaagCCTGCGAGCGTTCGCCTCGCCTGAGGAGA
GGAGGTTGAGAGCCGTCTACCGGGATCTGTGGGAGAGAGGGTTAACTATT
GGGAGTGGCAGTGCGTACGGCGCCGATTTCACCGCGTATGAAGgtaggtt
taatctgcctccctccctccctccctagatgatggagggtacttcaagca
tgtacacacaatgcaccttccttcccttcccactatccgattaccctcag
GCGATCCCTTGGCTTTTCACTCCTTTGCCGCCTTCATCGTCCTACCTGCG
GATGCCTCTCTCTCCGCCAGAGCCCTCTCGGCAAGCGTGCGCCTTGAGCA
AAGCGTGGTCAAATTACTCGTGTATGCCATTTGTCATGATTTAAAGGAAG
AAGGGGAGATGGAAAGGGAGGAAGAAGAGGACGGGGGAAGAGTGAAGGGG
AAGGAGGAGGGAGGGAGAGAGCAAGGGGGGAGGGAGGAGGAGGAGAGGGG
GGATGTGGGAAGTCGGGCGGCGATGACGAGGTTTGGTTGGCCGAGAAGAA
GTCGAGTGGGTGGATTTATGATTGAATACATGACACTGAGGTTCATCTCG
GTAACGAGAAGGATGGAGTAA
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protein sequence of NO14G00260.1

>NO14G00260.1-protein ID=NO14G00260.1-protein|Name=NO14G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
METGATTGEGVEDMRGNNAMEGGEGGKGGEVVEGMDGGDVVTPPAAPGDS
KNQQHDEEEQQQQQQQRQQQQEKEEEEADGQRLPFDNARGVDPQKGGRAE
EQADLSPTPPEVAEEERRPDNKGKEHREEDDAEPPLKKKRAKEFMSWFPS
SAHIATMPLPVAPSLLPCPSPSPPPRPPPHASPLSSSHTLPPSSNDGSPP
TPLLPPPPPPRPPPPVVEEVADRLPLRTAHLTDDGTALVWDAATALELRG
KHRMLSRSLGMGSIRVSAVQRAVPVALLPPALALGIEEGLLSMATEAPRA
DTDYFDKRVMDEKTVNAIEEERRERKRKRYEYEVQKALEQQEADTAGAAV
AAAESAPFPPSLAPSSNESGDGVLFIAAREGGGGEGERESEGGRSEGGEG
NLRSSRPTREATKEEEAQPLRAFASPEERRLRAVYRDLWERGLTIGSGSA
YGADFTAYEGDPLAFHSFAAFIVLPADASLSARALSASVRLEQSVVKLLV
YAICHDLKEEGEMEREEEEDGGRVKGKEEGGREQGGREEEERGDVGSRAA
MTRFGWPRRSRVGGFMIEYMTLRFISVTRRME*
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Synonyms
Publications