NO13G03250, NO13G03250 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G03250 vs. NCBI_GenBank
Match: EWM20740.1 (channel hemolysin iii family protein [Nannochloropsis gaditana]) HSP 1 Score: 331.3 bits (848), Expect = 3.500e-87 Identity = 161/195 (82.56%), Postives = 171/195 (87.69%), Query Frame = 0 Query: 56 TKGQQARSPLPTYAGALPEDPAEAARLRKLYPPYSDAELDEAKKSQLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLGLHEL 251 T+ ++ +P+YAGA P DP E RLR LYPPYSD ELDEAKK QLIPGEVLYCEGA+KP WRGVLHGWSL LVP +A+ LL KADTPTE LAASLFALCCL LFLSSW+YHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL +TRLYVL GSALVA WGMIQIFRLQKNLIYFVLTASVMG GLHEL Sbjct: 164 TRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHEL 358
BLAST of NO13G03250 vs. NCBI_GenBank
Match: XP_005855695.1 (channel hemolysin iii family [Nannochloropsis gaditana CCMP526] >EKU20662.1 channel hemolysin iii family [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 287.7 bits (735), Expect = 4.400e-74 Identity = 159/263 (60.46%), Postives = 165/263 (62.74%), Query Frame = 0 Query: 62 RSPLPTYAGALPEDPAEAARLRKLYPPYSDAELDEAKKSQLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLGLHELVAHLTSLELTLIIASWSQYFLGMLIYALGWPRLXXXXXXXXXXXXXXXXXXAGTAAVVTYSLLARFDVSRCLWA 325 ++ +P+YAGA P DP E RLR LYPPYSD ELDEAKK QLIPGEVLYCE E LAASLFALCCL LFLSSW+YHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL +TRLYVL GSALVA WGMIQIFRLQK LIYFVLTASVMG GLHE LGWPRL AGTAAVVTYSLL RFDV RCLWA Sbjct: 94 QAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCE----------------------------------EHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKKLIYFVLTASVMGFGLHE----------------------------LGWPRLWPRHFSSHELMHALTISAAGTAAVVTYSLLDRFDVGRCLWA 294
BLAST of NO13G03250 vs. NCBI_GenBank
Match: WP_015347971.1 (hemolysin III family channel protein [Myxococcus stipitatus] >AGC43710.1 hemolysin III family channel protein [Myxococcus stipitatus DSM 14675]) HSP 1 Score: 88.2 bits (217), Expect = 5.100e-14 Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 0 Query: 105 GEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYF----VLTASV-MGLG------LHELVAHLTSLELTLIIASWSQYFLGMLIYALGWPRL 284 G VL + KP RGVLH ++ + VL++ A T AA L+A+ ++LF S +YHRV W+ R WM+K+DH IFI+++G P++L+ L+ G +L+ A + + K+L + VLTA++ + +G L E+ A L +ELTLI+ Y G L YAL P L Sbjct: 23 GPVLTAQAVEKPKLRGVLHQFAAVGALGAGAVLVSMAPTLRTATAAGLYAISLVVLFAVSATYHRVDWSVRARAWMRKMDHASIFILIAGTYTPIALIGLSGA-----AGDSLLLAIWSGALLGVVKSLFWAHAPKVLTAALALAVGWTLVPYLGEVRAALGGVELTLILLGGVAYTSGALAYALKRPDL 207
BLAST of NO13G03250 vs. NCBI_GenBank
Match: WP_087135783.1 (hemolysin III [Mycetocola reblochoni] >SJN16968.1 COG1272: Predicted membrane protein hemolysin III homolog [Mycetocola reblochoni REB411]) HSP 1 Score: 87.0 bits (214), Expect = 1.100e-13 Identity = 79/241 (32.78%), Postives = 122/241 (50.62%), Query Frame = 0 Query: 51 GVAEMTKGQQARS--PLPTYAGALPEDPAEAARLRKLYPPYSDAELDEAKKSQLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL--NKTRLYVL---TGSALVAAWGMIQIFR---LQKNLIYFVLTASVMGLGLHELVAHLTSLELTLIIASWSQYFLGMLIYALGWP 282 G E + ARS PLP A A+ D A L + P DA D+ P EV KPSWRG +H + + A +VL+ AD P + ++++FAL LLLF +S YHR +W PR +V +++LDH IF++++G P+++LAL K RL +L G+ L + + I L L + A+VM LG ++VA ++ + L++ Y G ++Y + P Sbjct: 6 GSGERKNDRDARSDVPLPESAAAVAADDATGPELPNI--PLIDARADD-------PAEV-------KPSWRGWIHAATFPVAVAAGIVLVVLADGPAASWSSAVFALTSLLLFGNSALYHRFNWGPRMKVALKRLDHANIFLLIAGTYTPIAVLALPPEKGRLLLLIVWAGALLGIGFRVFWITAPRWLYVPLYLALGWAAVMYLG--DIVA-ANAVTMILVVIGGLLYSGGAVVYGMKRP 227
BLAST of NO13G03250 vs. NCBI_GenBank
Match: CRK61592.1 (COG1272: Predicted membrane protein hemolysin III homolog [Alloactinosynnema sp. L-07]) HSP 1 Score: 85.5 bits (210), Expect = 3.300e-13 Identity = 70/217 (32.26%), Postives = 102/217 (47.00%), Query Frame = 0 Query: 75 DPAEAARLRKLYPPYSDAELDEAKKSQLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTP---TETLAASLFALCCLLLFLSSWSYHRVHW-TPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLG------LHELVAHLTSLELTLIIASWSQYFLGMLIYALGWP 282 DPA A +R L L++ + + P G KP RGV+H WS ++ A L+ A + T LA S++ L LF S YHR W T WM++LDH MIF+ ++G P SLLA++K Y++ G A G + + L + ++ T + LG L EL+AH L L++A Y +G + YA WP Sbjct: 2 DPATAFHVRNL----RCRNLEDVTAATMPPA------GFSKPRLRGVIHFWSFIVSVATGATLIALAASTVSGTAALATSVYGATVLGLFGVSALYHRRWWVTETARTWMKRLDHSMIFVFIAGTYTPFSLLAMSKPTGYIVLGVVWGGAIGGVALKMLWPHAPRWLGTPIYIALGWVAVFVLPELLAHAGVAALVLLLAGGLFYTVGAVFYATKWP 208
BLAST of NO13G03250 vs. NCBI_GenBank
Match: WP_054054616.1 (hemolysin III [Alloactinosynnema sp. L-07]) HSP 1 Score: 85.1 bits (209), Expect = 4.300e-13 Identity = 62/180 (34.44%), Postives = 89/180 (49.44%), Query Frame = 0 Query: 112 GAIKPSWRGVLHGWSLLLVPALAVVLLTKADTP---TETLAASLFALCCLLLFLSSWSYHRVHW-TPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLG------LHELVAHLTSLELTLIIASWSQYFLGMLIYALGWP 282 G KP RGV+H WS ++ A L+ A + T LA S++ L LF S YHR W T WM++LDH MIF+ ++G P SLLA++K Y++ G A G + + L + ++ T + LG L EL+AH L L++A Y +G + YA WP Sbjct: 5 GFSKPRLRGVIHFWSFIVSVATGATLIALAASTVSGTAALATSVYGATVLGLFGVSALYHRRWWVTETARTWMKRLDHSMIFVFIAGTYTPFSLLAMSKPTGYIVLGVVWGGAIGGVALKMLWPHAPRWLGTPIYIALGWVAVFVLPELLAHAGVAALVLLLAGGLFYTVGAVFYATKWP 184
BLAST of NO13G03250 vs. NCBI_GenBank
Match: WP_103348630.1 (hemolysin III [Amycolatopsis sp. CA-128772]) HSP 1 Score: 83.2 bits (204), Expect = 1.700e-12 Identity = 59/177 (33.33%), Postives = 86/177 (48.59%), Query Frame = 0 Query: 114 IKPSWRGVLHGWSLLLVPALAVVLLTKAD---TPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLG------LHELVAHLTSLELTLIIASWSQYFLGMLIYALGWP 282 ++P RG +H W+ A A VL++ A +P TLA S++ L L LF S YHR W+PR WM++ DH MIF+ ++G P +LLA++K YV+ A + + L N +V + LG EL +H L L+ Y LG + YA+ WP Sbjct: 3 LRPRLRGHIHFWTFFGAVAAAAVLISLAASTVSPVATLATSVYGLTVLGLFGVSALYHRRFWSPRAYKWMKRADHSMIFLFIAGTYTPFTLLAMSKPTGYVVLSIVWGGAVAGVALKMLWPNAPRWVGVPIYIALGWVAVFVFPELASHAGIAALVLLCVGGLFYTLGAVFYAVKWP 179
BLAST of NO13G03250 vs. NCBI_GenBank
Match: KGA05098.1 (DNA-binding protein [actinobacterium acMicro-4]) HSP 1 Score: 82.8 bits (203), Expect = 2.200e-12 Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 0 Query: 88 PYSDAELDEAKKSQLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLG------LHELVAHLTSLELTLIIASWSQYFLGMLIYALGWP 282 P D A L+ + Y KP+WRG +H +L L A +VL+ A TL++++FAL +LLF S +YHR W P + +++LDH IFI+++G P+++LAL + +L + A I + + +V +GLG L +L+A ++ + L+I Y LG ++YAL WP Sbjct: 8 PQEDRTYSGALHLPLLEESLEYEAVEHKPTWRGWIHLGTLPLAIAAGIVLVVLASGVAATLSSAVFALSAVLLFGISGTYHRFSWKPATKQVLRRLDHANIFILIAGTYTPIAVLALPSNKGMLLLAAVWAGALIGIGLRVFWLSAPRWVYVPLYLGLGWAAVMYLQDLLAANFAM-MILVIVGGLAYSLGAVVYALKWP 206
BLAST of NO13G03250 vs. NCBI_GenBank
Match: WP_082282696.1 (hemolysin III [Myxococcus hansupus] >AKQ64483.1 putative membrane protein hemolysin III [Myxococcus hansupus]) HSP 1 Score: 81.6 bits (200), Expect = 4.800e-12 Identity = 60/177 (33.90%), Postives = 94/177 (53.11%), Query Frame = 0 Query: 115 KPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL---NKTRLYVLTGSALVAAWGMIQ-IFRLQKNLIYFVLTASVMGLGL----HELVAHLTSLELTLIIASWSQYFLGMLIYALGWPRL 284 KP RGVLH ++ +VL++ A T AA++FA+ ++LF S +YHRV+W+ R WM+++DH IFI+++G P++LL + RL +L + A G++Q +F +Q + A +G L E LT ++TLI+A Y G + YAL P L Sbjct: 8 KPKLRGVLHQFAATGALGAGLVLVSMAPTHRAAAAAAVFAVSLVVLFTVSATYHRVNWSLRGRTWMRRMDHASIFILIAGTYTPVALLGIAGATGDRLLLLIWAGAFA--GVLQSLFWIQAPKVVTAALAVAVGWTLVPYFDEARQALTGNQMTLILAGGVAYTAGAIAYALKRPNL 182
BLAST of NO13G03250 vs. NCBI_GenBank
Match: WP_096420923.1 (hemolysin III [Microcella alkaliphila] >BAU31722.1 hemolysin III family protein [Microcella alkaliphila]) HSP 1 Score: 81.6 bits (200), Expect = 4.800e-12 Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 0 Query: 102 LIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTR---LYVLTGSALVAAWGMIQIFRLQKNLIY---FVLTASVMGLGLHELVAHLTSLELTLIIASWSQYFLGMLIYALGWP 282 L+ + Y G KP+WRG +H + L L +VL+ D P ++++F L LLLF S +YHR W+ R V +++LDH IF++++G PLSLLAL + L VL S + G + +Y ++L L + +LVA ++ + LI+A Y G +IY + P Sbjct: 33 LLDDSIDYRAGEKKPTWRGWIHAGTFPLAIVLGLVLVALGDGPMARWSSAVFVLSSLLLFGISATYHRFTWSDRMRVLLKRLDHANIFLLIAGTYTPLSLLALPLDKGLILLVLVWSGALLGIGFRVFWITAPRWVYVPLYLLLGWAAVLYIGDLVAANVAM-MVLIVAGGLAYTAGAIIYGMKKP 217 The following BLAST results are available for this feature:
BLAST of NO13G03250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G03250 ID=NO13G03250|Name=NO13G03250|organism=Nannochloropsis oceanica|type=gene|length=3224bpback to top protein sequence of NO13G03250.1 >NO13G03250.1-protein ID=NO13G03250.1-protein|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bpback to top Synonyms
Publications
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