jgi.p|Nanoce1779_2|673797, gene_8976 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673797
Unique Namegene_8976
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_30:70771..80265 +

Link to JBrowse

Properties
Property NameValue
TranscriptId673883
ProteinId673797
Product nameHaemolysin-III related-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:70771..80265 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL048ncniL048Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03250NO13G03250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673797mRNA_8976-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673797mRNA_8976Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|673797

>mRNA_8976-protein ID=mRNA_8976-protein|Name=jgi.p|Nanoce1779_2|673797|organism=Nannochloropsis oceanica|type=polypeptide|length=922bp
MTSPTDAPSSSSSATTSLPNGGGVATAAATPAPTVVAASIPEKQEVDEQV
MEKPKAIKRGMEPAFTTRLRTAAVDDYRKKYQRFRSGKAHGASGEGPTGH
RSGEEEEEEEEEAKEAEEIDEDTSVLEAENTRLYQRVADFRRQYRSYRVG
AAKGVRSDASRKITLEEAKVTPVGQLSAFLRTQVAPSLGTRRVVSTLNFA
HRSTFHAHIGAGRLGLGLVVPAIIKSRVPFAIVNHPSKAWDPITHSPSRD
PRVSLKVNGEVIAKDLLVVRDLSELPPTNPHSQGNLFVPSDDPLLLHLLV
TTASSFSISLGPSMLTVLVPLLSKLPVVPAGGFRPCLFAAENDHKMVRRL
AKALEGRVDVHEVMVDRICVGRTITTDAIDVQAEPFDGEMVILKTPEAPR
CLPFSGDHVRLPSMAAEASMWTRRKFLLVNGTHTTLAFLTLCLRQPRQSP
DEDETIPGDHELICWDQEKFGKKMYNDIWCWATARVMVLLWEHELDLMKH
AFAVPSDDALIDVLLASTVKTLQRFSSIKDTTKRVLAGGVAVRWKGRLND
VREFLSDFNRPPNPITALLLKKAKVTLPGIKKAVRELCEESYRFTGLGTV
TPNKQGKDSSSLYPAPSLSVRRNSSSGSDGSTRRRRQRREQGGGESGVAE
MTKGQQARSPLPTYAGALPEDPAEAARLRKLYPPYSDAELDEAKKSQLIP
GEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFA
LCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL
NKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLGLHELVAHL
TSLELTLIIASWSQYFLGMLIYALGWPRLWPRHFSSHELMHALIVTAAGT
AAVVTYSLLARFDVSRCLWAR*
back to top
Synonyms
Publications