NO13G03170, NO13G03170 (gene) Nannochloropsis oceanica

Overview
NameNO13G03170
Unique NameNO13G03170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1896
Alignment locationchr13:921053..922948 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:921053..922948 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G03170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR048ncniR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR096ngnoR096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G03170.1NO13G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604783gene_8987Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G03170.1NO13G03170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G03170 ID=NO13G03170|Name=NO13G03170|organism=Nannochloropsis oceanica|type=gene|length=1896bp
ATGTCTAAATTGTCGTCGGAAGAAGGCTCTAGTGCCTCGTCCACTACAAG
GAATGCTGCCAGGAGCCTGCCAGTGGCTGCTCTGGAGGCAGATGCGGAGG
AGCGGGCCAAGCGCGCCCAGATCTCAACCTGTACACCACAGCCCAACGGg
tggagtaggagattttttttgtgtggcgctcccccctcctgttcaagccc
ttcaataacgataaaggggtggctattactgtgtgggctgcaacgagtgg
aagagaggaaactccttgcaggcggacgaccacctgaggaatcgctatcc
agacgaatggactcgcgtcaaacgcctctctaacgcagaggcgagtgata
tcgtgtaggcctcgtcttctagATCGAAGGTGCAGACCAAACTTCACCAC
CATCAATACTGGTGGGGCCAGGCCCTCCAACACGTGCACAATTACCTTAA
AGGCAGACCAAAGGCATTCGAGCTCATTTCCTTGGTGCACGAGGTGATTT
TACGGGAGCATAGCCACGAAAGATTTTGGAGGTATTCAAAGCACTTGAGA
GACCTGGCCCGTTCAAGGAGACGGCCCCTAGTGCTCGACATTTTGTTGGA
TGCCAGGTTTGCCCGCAGCCTCCGACCCTTTAACCTCGGCAACGACCAAG
CGTTTGAGTATTTTGTGTCGACCATCGCCCCCCGAAATAGGCTGCCGACA
ACCCAGACTGTACGCAAGCATGTGGGGGTAATGTTTGTCCAATGCAAGGT
GCTCATCAAGGGCTATATCGCCCCGCGGGGCTCGGATGAGGGGTTTGGTC
CAGCATGTTGTCTGACCGCCTGCCTTCAAACCGCTTGGGCCGGACGCAAC
GACAGATCCTACAACGGCACACTTGCCAACATGCAGAACGACGACTTCAG
GCCCCGCCTCGTCTGCTTGGACATGGTGAAGTGCTTGATAAAGCACCACA
CGGCTGCCATGATCACCGAGATGCTGGCCAAGACAATTGAACACTTCAAT
ATTCCTCATGCCGCTATCTTCGGCACGGTCCTAGACACTCGGTCGAATGT
AAAGGAAGgtgcatgagcgccatttttttaaaatattttttttattgcga
tttgatttgatctattcattcatttacttatcgatcgaaagacacgtata
cgtgtgtgtctttccaagatgttttgattaaagaagggcacttccccatt
gcttctgtccttgcatgatcatgcatgattcctgctgagccagttggatg
gatctcttcgatatgcgtgacaaacattatatttaactttgttccacata
catattttccagGCGTGCTAGACGTTGGTCTCAAGTCCTCCTCATGTTCT
ACAAATGCCTTACAGCGGACCGTCATCAACTCCCTGAACGCTGCCTTTAA
CATTAAGATTATGCTGAGCAGGATGAAGTCAGCTGTGGCCATCATGCGCA
TGAGCCACTCCCAAACGGCTTACCTTAGGGAGGCACAGCGGGCAGCAGGC
ATGTTTGATCACCAGCTCATTCAGTCTATGCAACACGGTGGAGCTCAGTC
GCTTTGCCATCGAGGGCCTGCTAGAGCAGCGGCTCACAATCGATCCAGAC
GCCTTCAGTGCCCTGCGCAATCTACTCGCCATGCTCGATCTCTCTCGATT
CTAAAGGCGGAGTTTGGCACAGCCAGGAAGGTGGTGTCTGCCATCTTCAA
GCTTAAAACACTCATGGCTGCTGAGAGGGTCGTTCTTGCCACCTGTGTCA
GGGCCAGACCATCCTGGGTCCAGTGCCGAGGTTGTTGCTACGGACCTCTA
CAGCGGTGTCCAGAAAGTCCGCCAGCATATGTCAAAGACTCGTTCCGGGT
GTTTCTCATACCTCTGTGGATCAACGCTCTGTATAAACTCCATTAG
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protein sequence of NO13G03170.1

>NO13G03170.1-protein ID=NO13G03170.1-protein|Name=NO13G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MSKLSSEEGSSASSTTRNAARSLPVAALEADAEERAKRAQISTCTPQPNG
SKVQTKLHHHQYWWGQALQHVHNYLKGRPKAFELISLVHEVILREHSHER
FWRYSKHLRDLARSRRRPLVLDILLDARFARSLRPFNLGNDQAFEYFVST
IAPRNRLPTTQTVRKHVGVMFVQCKVLIKGYIAPRGSDEGFGPACCLTAC
LQTAWAGRNDRSYNGTLANMQNDDFRPRLVCLDMVKCLIKHHTAAMITEM
LAKTIEHFNIPHAAIFGTVLDTRSNVKEGVLDVGLKSSSCSTNALQRTVI
NSLNAAFNIKIMLSRMKSAVAIMRMSHSQTAYLREAQRAAGMFDHQLIQS
MQHGGAQSLCHRGPARAAAHNRSRRLQCPAQSTRHARSLSILKAEFGTAR
KVVSAIFKLKTLMAAERVVLATCVRARPSWVQCRGCCYGPLQRCPESPPA
YVKDSFRVFLIPLWINALYKLH*
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Synonyms
Publications