NO13G03170.1, NO13G03170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03170.1
Unique NameNO13G03170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr13:921053..922948 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:921053..922948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G03170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03170NO13G03170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03170.1NO13G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03170.1.cds1NO13G03170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03170.1.cds2NO13G03170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03170.1.cds3NO13G03170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03170.1 ID=NO13G03170.1|Name=NO13G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp
ATGTCTAAATTGTCGTCGGAAGAAGGCTCTAGTGCCTCGTCCACTACAAG
GAATGCTGCCAGGAGCCTGCCAGTGGCTGCTCTGGAGGCAGATGCGGAGG
AGCGGGCCAAGCGCGCCCAGATCTCAACCTGTACACCACAGCCCAACGGA
TCGAAGGTGCAGACCAAACTTCACCACCATCAATACTGGTGGGGCCAGGC
CCTCCAACACGTGCACAATTACCTTAAAGGCAGACCAAAGGCATTCGAGC
TCATTTCCTTGGTGCACGAGGTGATTTTACGGGAGCATAGCCACGAAAGA
TTTTGGAGGTATTCAAAGCACTTGAGAGACCTGGCCCGTTCAAGGAGACG
GCCCCTAGTGCTCGACATTTTGTTGGATGCCAGGTTTGCCCGCAGCCTCC
GACCCTTTAACCTCGGCAACGACCAAGCGTTTGAGTATTTTGTGTCGACC
ATCGCCCCCCGAAATAGGCTGCCGACAACCCAGACTGTACGCAAGCATGT
GGGGGTAATGTTTGTCCAATGCAAGGTGCTCATCAAGGGCTATATCGCCC
CGCGGGGCTCGGATGAGGGGTTTGGTCCAGCATGTTGTCTGACCGCCTGC
CTTCAAACCGCTTGGGCCGGACGCAACGACAGATCCTACAACGGCACACT
TGCCAACATGCAGAACGACGACTTCAGGCCCCGCCTCGTCTGCTTGGACA
TGGTGAAGTGCTTGATAAAGCACCACACGGCTGCCATGATCACCGAGATG
CTGGCCAAGACAATTGAACACTTCAATATTCCTCATGCCGCTATCTTCGG
CACGGTCCTAGACACTCGGTCGAATGTAAAGGAAGGCGTGCTAGACGTTG
GTCTCAAGTCCTCCTCATGTTCTACAAATGCCTTACAGCGGACCGTCATC
AACTCCCTGAACGCTGCCTTTAACATTAAGATTATGCTGAGCAGGATGAA
GTCAGCTGTGGCCATCATGCGCATGAGCCACTCCCAAACGGCTTACCTTA
GGGAGGCACAGCGGGCAGCAGGCATGTTTGATCACCAGCTCATTCAGTCT
ATGCAACACGGTGGAGCTCAGTCGCTTTGCCATCGAGGGCCTGCTAGAGC
AGCGGCTCACAATCGATCCAGACGCCTTCAGTGCCCTGCGCAATCTACTC
GCCATGCTCGATCTCTCTCGATTCTAAAGGCGGAGTTTGGCACAGCCAGG
AAGGTGGTGTCTGCCATCTTCAAGCTTAAAACACTCATGGCTGCTGAGAG
GGTCGTTCTTGCCACCTGTGTCAGGGCCAGACCATCCTGGGTCCAGTGCC
GAGGTTGTTGCTACGGACCTCTACAGCGGTGTCCAGAAAGTCCGCCAGCA
TATGTCAAAGACTCGTTCCGGGTGTTTCTCATACCTCTGTGGATCAACGC
TCTGTATAAACTCCATTAG
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protein sequence of NO13G03170.1

>NO13G03170.1-protein ID=NO13G03170.1-protein|Name=NO13G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MSKLSSEEGSSASSTTRNAARSLPVAALEADAEERAKRAQISTCTPQPNG
SKVQTKLHHHQYWWGQALQHVHNYLKGRPKAFELISLVHEVILREHSHER
FWRYSKHLRDLARSRRRPLVLDILLDARFARSLRPFNLGNDQAFEYFVST
IAPRNRLPTTQTVRKHVGVMFVQCKVLIKGYIAPRGSDEGFGPACCLTAC
LQTAWAGRNDRSYNGTLANMQNDDFRPRLVCLDMVKCLIKHHTAAMITEM
LAKTIEHFNIPHAAIFGTVLDTRSNVKEGVLDVGLKSSSCSTNALQRTVI
NSLNAAFNIKIMLSRMKSAVAIMRMSHSQTAYLREAQRAAGMFDHQLIQS
MQHGGAQSLCHRGPARAAAHNRSRRLQCPAQSTRHARSLSILKAEFGTAR
KVVSAIFKLKTLMAAERVVLATCVRARPSWVQCRGCCYGPLQRCPESPPA
YVKDSFRVFLIPLWINALYKLH*
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mRNA from alignment at chr13:921053..922948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03170.1 ID=NO13G03170.1|Name=NO13G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp|location=Sequence derived from alignment at chr13:921053..922948+ (Nannochloropsis oceanica)
ATGTCTAAATTGTCGTCGGAAGAAGGCTCTAGTGCCTCGTCCACTACAAG
GAATGCTGCCAGGAGCCTGCCAGTGGCTGCTCTGGAGGCAGATGCGGAGG
AGCGGGCCAAGCGCGCCCAGATCTCAACCTGTACACCACAGCCCAACGGG
TGGAGTAGGAGATTTTTTTTGTGTGGCGCTCCCCCCTCCTGTTCAAGCCC
TTCAATAACGATAAAGGGGTGGCTATTACTGTGTGGGCTGCAACGAGTGG
AAGAGAGGAAACTCCTTGCAGGCGGACGACCACCTGAGGAATCGCTATCC
AGACGAATGGACTCGCGTCAAACGCCTCTCTAACGCAGAGGCGAGTGATA
TCGTGTAGGCCTCGTCTTCTAGATCGAAGGTGCAGACCAAACTTCACCAC
CATCAATACTGGTGGGGCCAGGCCCTCCAACACGTGCACAATTACCTTAA
AGGCAGACCAAAGGCATTCGAGCTCATTTCCTTGGTGCACGAGGTGATTT
TACGGGAGCATAGCCACGAAAGATTTTGGAGGTATTCAAAGCACTTGAGA
GACCTGGCCCGTTCAAGGAGACGGCCCCTAGTGCTCGACATTTTGTTGGA
TGCCAGGTTTGCCCGCAGCCTCCGACCCTTTAACCTCGGCAACGACCAAG
CGTTTGAGTATTTTGTGTCGACCATCGCCCCCCGAAATAGGCTGCCGACA
ACCCAGACTGTACGCAAGCATGTGGGGGTAATGTTTGTCCAATGCAAGGT
GCTCATCAAGGGCTATATCGCCCCGCGGGGCTCGGATGAGGGGTTTGGTC
CAGCATGTTGTCTGACCGCCTGCCTTCAAACCGCTTGGGCCGGACGCAAC
GACAGATCCTACAACGGCACACTTGCCAACATGCAGAACGACGACTTCAG
GCCCCGCCTCGTCTGCTTGGACATGGTGAAGTGCTTGATAAAGCACCACA
CGGCTGCCATGATCACCGAGATGCTGGCCAAGACAATTGAACACTTCAAT
ATTCCTCATGCCGCTATCTTCGGCACGGTCCTAGACACTCGGTCGAATGT
AAAGGAAGGTGCATGAGCGCCATTTTTTTAAAATATTTTTTTTATTGCGA
TTTGATTTGATCTATTCATTCATTTACTTATCGATCGAAAGACACGTATA
CGTGTGTGTCTTTCCAAGATGTTTTGATTAAAGAAGGGCACTTCCCCATT
GCTTCTGTCCTTGCATGATCATGCATGATTCCTGCTGAGCCAGTTGGATG
GATCTCTTCGATATGCGTGACAAACATTATATTTAACTTTGTTCCACATA
CATATTTTCCAGGCGTGCTAGACGTTGGTCTCAAGTCCTCCTCATGTTCT
ACAAATGCCTTACAGCGGACCGTCATCAACTCCCTGAACGCTGCCTTTAA
CATTAAGATTATGCTGAGCAGGATGAAGTCAGCTGTGGCCATCATGCGCA
TGAGCCACTCCCAAACGGCTTACCTTAGGGAGGCACAGCGGGCAGCAGGC
ATGTTTGATCACCAGCTCATTCAGTCTATGCAACACGGTGGAGCTCAGTC
GCTTTGCCATCGAGGGCCTGCTAGAGCAGCGGCTCACAATCGATCCAGAC
GCCTTCAGTGCCCTGCGCAATCTACTCGCCATGCTCGATCTCTCTCGATT
CTAAAGGCGGAGTTTGGCACAGCCAGGAAGGTGGTGTCTGCCATCTTCAA
GCTTAAAACACTCATGGCTGCTGAGAGGGTCGTTCTTGCCACCTGTGTCA
GGGCCAGACCATCCTGGGTCCAGTGCCGAGGTTGTTGCTACGGACCTCTA
CAGCGGTGTCCAGAAAGTCCGCCAGCATATGTCAAAGACTCGTTCCGGGT
GTTTCTCATACCTCTGTGGATCAACGCTCTGTATAAACTCCATTAG
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Coding sequence (CDS) from alignment at chr13:921053..922948+

>NO13G03170.1 ID=NO13G03170.1|Name=NO13G03170.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr13:921053..922948+ (Nannochloropsis oceanica)
ATGTCTAAATTGTCGTCGGAAGAAGGCTCTAGTGCCTCGTCCACTACAAG
GAATGCTGCCAGGAGCCTGCCAGTGGCTGCTCTGGAGGCAGATGCGGAGG
AGCGGGCCAAGCGCGCCCAGATCTCAACCTGTACACCACAGCCCAACGGA
TCGAAGGTGCAGACCAAACTTCACCACCATCAATACTGGTGGGGCCAGGC
CCTCCAACACGTGCACAATTACCTTAAAGGCAGACCAAAGGCATTCGAGC
TCATTTCCTTGGTGCACGAGGTGATTTTACGGGAGCATAGCCACGAAAGA
TTTTGGAGGTATTCAAAGCACTTGAGAGACCTGGCCCGTTCAAGGAGACG
GCCCCTAGTGCTCGACATTTTGTTGGATGCCAGGTTTGCCCGCAGCCTCC
GACCCTTTAACCTCGGCAACGACCAAGCGTTTGAGTATTTTGTGTCGACC
ATCGCCCCCCGAAATAGGCTGCCGACAACCCAGACTGTACGCAAGCATGT
GGGGGTAATGTTTGTCCAATGCAAGGTGCTCATCAAGGGCTATATCGCCC
CGCGGGGCTCGGATGAGGGGTTTGGTCCAGCATGTTGTCTGACCGCCTGC
CTTCAAACCGCTTGGGCCGGACGCAACGACAGATCCTACAACGGCACACT
TGCCAACATGCAGAACGACGACTTCAGGCCCCGCCTCGTCTGCTTGGACA
TGGTGAAGTGCTTGATAAAGCACCACACGGCTGCCATGATCACCGAGATG
CTGGCCAAGACAATTGAACACTTCAATATTCCTCATGCCGCTATCTTCGG
CACGGTCCTAGACACTCGGTCGAATGTAAAGGAAGGCGTGCTAGACGTTG
GTCTCAAGTCCTCCTCATGTTCTACAAATGCCTTACAGCGGACCGTCATC
AACTCCCTGAACGCTGCCTTTAACATTAAGATTATGCTGAGCAGGATGAA
GTCAGCTGTGGCCATCATGCGCATGAGCCACTCCCAAACGGCTTACCTTA
GGGAGGCACAGCGGGCAGCAGGCATGTTTGATCACCAGCTCATTCAGTCT
ATGCAACACGGTGGAGCTCAGTCGCTTTGCCATCGAGGGCCTGCTAGAGC
AGCGGCTCACAATCGATCCAGACGCCTTCAGTGCCCTGCGCAATCTACTC
GCCATGCTCGATCTCTCTCGATTCTAAAGGCGGAGTTTGGCACAGCCAGG
AAGGTGGTGTCTGCCATCTTCAAGCTTAAAACACTCATGGCTGCTGAGAG
GGTCGTTCTTGCCACCTGTGTCAGGGCCAGACCATCCTGGGTCCAGTGCC
GAGGTTGTTGCTACGGACCTCTACAGCGGTGTCCAGAAAGTCCGCCAGCA
TATGTCAAAGACTCGTTCCGGGTGTTTCTCATACCTCTGTGGATCAACGC
TCTGTATAAACTCCATTAG
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Synonyms
Publications