NO13G02680, NO13G02680 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02680 vs. NCBI_GenBank
Match: EWM29088.1 (wsc domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 271.9 bits (694), Expect = 6.000e-69 Identity = 218/774 (28.17%), Postives = 347/774 (44.83%), Query Frame = 0 Query: 43 RLQEGMGDGHVEGCFDRFDALTEIPLTTSLIGLHNNRRCQAACGVQGYALAAT-CSKPLRCFCGNDYPSAFHQVDVGKCNAPCNPDHVSCLLMTCCGSRDGQLFTVSFTGRQNILLQVLRQLSFDYRTSAPTFRRKIERSFV---DSSALEVVNSNTQHSLLVTGRPCSLNSTNASNAWF---QDACYSLYWASRLNYADAERKCQQENHDSRVVVPVSAEENQFVARLQCGCQGWLGIDTMLIDNSNVGPQLLHYQNWTASASVSEVGPCGQLRADGAWVKRPCIQNDGLLADNADDNKDDDYVEGSVKTPHSSNCFVCKRIRRQGEDRAVTLAAASTELSDAWRLERVMEGTRPNVIF--------MHVRHDSTGNYLACNPDDGGLHIVRADEGEAATFVAVINERDGSFTLEEH--SLYVALLDDNSLAC--LDAKKEGKRGYSSASE----------TPNAAVFKPTCMLRVLAAHFLRLSIVTL-----SNDLHYRGRRECSVAVFDTTPSTPSLRCQ-----SAPQFAGGESTADDELWLEQQALLVYDESRWLQPRTPLPFGRLKCINEHPRQSTICTLAYGQGFTVARALTIDWNNIIFDSITVRANSQAALQTKFRYR---------GFTGASDEDN----NESEDLSAASKEWANDFTTVFNNFYELAMVYAYVGTRNWQMTLLALPLTTHIVQFWLEVVMLRYRWRALFQARGSFRVMYFDQPI----GTQHDIGDVSNYDDIFFYIFGRYDFPVEASLITT 761 +L G D VEGCF+ F A + L + +N RCQA C +GYALAAT C+CGNDYP H+VD +C+ PC+ D +C L TCCG R+G LFT+S+ G N + +L +LS +YR+S FR+ I ++ + S+ ++ S+ L P L+ N + A Y +A+ KCQ E +V S+ +N FV L GC GWL I++ G L QN+ +S + QL+ DG+W+ P +D +A CF C++ A +D W +E P+ + ++++ +T YL C D L++ E + I+ G+ T H ++ + N L C L + R + S + A+F P+ + + H+LR+++ +L S + RG +ECS+AV+D +P + + C+ +A G + L +Q+AL VYD+S ++ R PLP GR+ C+N++P ++ C LAYG+ + R ++ ++FD++ + + +FR++ G A E NE + LS K N T FN FY+ V R WQ+ + PLT +Q W+ L+YRWRA+FQ RG F + F + + G +GD+ +DI + ++G Y+ PVE +L T Sbjct: 51 KLAIGGKDEQVEGCFNNFIAKFAVSLAQNNF---SNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSST-IFRQNIINDYLLSDNRSSFQLCASDK----LPENPPLYLSVGNGCPVGWCKRDXXXXXXXXADPSTYDEAQDKCQLEG--GELVNVRSSVQNAFVLSLYAGCLGWLHIESYY-----EGATLHIDQNF---GEISHL----QLKPDGSWIALPGYDSDRRVA-----------------------CFACQKA------CTPPFPALRPHEADEWDIE---ISAYPSSTYAWCTDCADSYLKNVNTHLYL-CVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMT 769
BLAST of NO13G02680 vs. NCBI_GenBank
Match: EWM26794.1 (low affinity immunoglobulin epsilon fc receptor [Nannochloropsis gaditana]) HSP 1 Score: 214.5 bits (545), Expect = 1.100e-51 Identity = 219/907 (24.15%), Postives = 345/907 (38.04%), Query Frame = 0 Query: 51 GHVEGCFDRFDALTEIPLTTSLIGLHNNRRCQAACGVQGYALAATCSKPLRCFCGNDYPSAFHQVDVGKCNAPCNPDHVSCLLMTCCGSRDGQLFTVSFTGRQNILLQVLRQLSFDYRTSAPTFRRKIERSFVDSSALEVVNSNTQHSLLVTGRPCSL---NSTNASNAWFQDACYSLYWASRLNYADAERKCQQENHDSRVVVPVSAEENQFVARLQCGCQGWLGIDTMLIDNSNVGP-QLLHYQNWTASASVSEVGPCGQLRADGAWVKRPC------------------------------------------------------------------IQNDGLLADN--ADDNKDDDYVEGSVKTPHSSNC--------------FVCKRIRRQGEDRAVTLAAASTELSDAWRLERVMEGTRPNVIFMHVRHDSTGNYLACN-----------PDDGGLHIVRA---------------------DEGEAATF-VAVINERDGSFTLEEHSLYVALL----------------------------------DDNSLACLDAKKEGKRG---------------YSSASETP---------------NAAVFKPTCMLRVLAAHFLRLSIVTLSNDLHYRGRRECSVAVFDTTPSTPSLRCQSAPQFAGGESTADDELWLEQQALLVYDESRWLQPRTPLPFGRLKCINEHPRQSTICTLAYGQGFTVARALTIDWNNIIFDSITVRANSQAALQTKFRYRGFTGASDEDNNESEDLSAASKEWANDFTTVFNNFYELAMVYAYVGTRNWQMTLLALPLTTHIVQFWLEVVMLRYRWRALFQARGSFRVMYFDQPIGTQHDIGDVSNYDDIFFYIFGRYDFPVEASLITTLDNQEERNWPVPLP 775 G EGCF +FD L + T + + +NR CQA C Q ++++AT C+CGN+YPSAF +V C+ PC+PD C + CCGSRDG FTV+F G Q+LRQL++DYR S P R I+ S+ L+V++SN + +V + S + F+ ACYS + ++Y A+ +CQ++ + + V S EEN ++ R+ GW+G + N +VG Q Y NW S G +L GA + ND L + N D K + G TP S F + + L + E +++ +E + ++++H +TG YL + +D L +V A DEG T +VI+ D S+ EH V + DD++ + A+K R +++ + TP +VF T ++ L++ VT+ R CS+ ++D T ++ S C + G+++ + L QA + D++ ++PRTPL GR KC NE P + CT +YG+G T + AL++ W N Q + RY T W N + ++N Y YV +RNW + + PLT +Q+WL V + Y W A+ +A GSF + GT H + DVS+ D+ Y +GRY +A +I T D + + + +P Sbjct: 144 GKTEGCFSKFDFL--LSQTYPAVEI-DNRVCQAFCASQRFSVSATSLN--TCYCGNNYPSAFFKVKDDICDNPCSPDKTYCFVYACCGSRDGTYFTVAFAG------QLLRQLTYDYRMSNPRLRDHIKTLMGASAPLQVMSSNGLSTGVVMSGGAGIGLQGSCPDHYSEFKGACYSRVYGKMMSYIQAKERCQEDG--ASLAVITSREENDYLTRMLFQRPGWIG-----LSNRDVGGFQWDDYTNWGPGEPNSLNGFVTKLPVSGAATGDAFDDLQAGVRNIRQLAVYSSSRLLGVQGRYLYTNGSEIIGNVMGTNKGGDTAVISLSYGQYFASAFGDVVNDKLQSLNLVVKDVKGNSITYGPYGTPGGSGAKSWIVNATGLLVGFFGFNSPQGINQLGFYDLQSPRCEEFTMLAVDQDVEPRWGTPLDVYLQHSATGAYLGIDGAGNVFTSTSRSNDAQLQVVGAVNTTGFTIKSKNYGFYLKLDPDEGHLKTLDSSVIDADDFSYYRREHQRRVPVAATENRRERNDAGAEDLRADESFMQSDSLSPKNSEDDSNEEGIFARKRRARNRRHQALDRSRREVLTFNAGTATPVPTPAGMKFDSNEANKPSVFSSTKSFGPVSVQNLQIG-VTVQKSESMPNPRYCSLKIYDLTATSDSFSC----YYIQGDTSNLPMVDLSVQAFTIQDKTTNMKPRTPLQNGRTKCENESPTDTLTCTFSYGEGLTFSTALSVTWGQ----------NYANQFQMERRYGENTAI-----------------WYN-YLYAYDNQYTSITTNTYVESRNWAVNVPVPPLTVCTIQYWLTSVDVNYVWLAILKATGSFELSANGVYFGTNHALSDVSDPWDLNVYQWGRYSAASQAEVIITTDEMQAAKYQLQVP 999
BLAST of NO13G02680 vs. NCBI_GenBank
Match: EWM26828.1 (macrophage mannose receptor 1 [Nannochloropsis gaditana]) HSP 1 Score: 141.7 bits (356), Expect = 9.400e-30 Identity = 86/327 (26.30%), Postives = 151/327 (46.18%), Query Frame = 0 Query: 466 GKRGYSSASETP-------------NAAVFKPTCMLRVLAAHFLRLSIVTLSNDLHYRGRRECSVAVFDTTPSTPSLRCQSAPQFAGGESTADDELWLEQQALLVYDESRWLQPRTPLPFGRLKCINEHPRQSTICTLAYGQGFTVARALTIDWNNIIFDSITVRANSQAALQTKFRYRGFTGASDEDNNESEDLSAASKEWANDFTTVFNNFYELAMVYAYVGTRNWQMTLLALPLTTHIVQFWLEVVMLRYRWRALFQARGSFRVMYFDQPIGTQHDIGDVSNYDDIFFYIFGRYDFPVEASLITTLDNQEERNWPVPLPTSSVV 780 G G++ A TP A VF + ++ LA L++S+ D R C++ ++D TP++ S C G+ T + +E A + D++ L PR+PL GR +C N P ++ C +AYG+G T R L I + + + + N +A + + G+ +F + N Y ++ +Y+ TRNW + + P + VQFW+ V + Y W+A+ A+GSF + + T + +S +D+FFY FG + +P +A +I T+D+ E + +P P+P+ + V Sbjct: 969 GGAGFTLAGNTPASTMAPFQKYANLPATVFMASTLIAPLALQNLQISVAVFREDT-MESPRLCTMFIYDLTPNSDSYTCYQVQ----GDPTGLPLVEMEMAAWITQDKTSILSPRSPLENGRTRCENSAPAETVTCNVAYGEGLTFQRELDITFGQ--YYAFFFQINQGSAAGSGGNFGGY----------------------YNFQAAYTNVYTSQVIRSYIETRNWAVVVPVSPQSLATVQFWISTVDINYVWQAILNAQGSFDISSMGLYLSTGQSLTTLSYLEDLFFYTFGTFAYPSQAEIIITVDDVENQKYPFPVPSMTNV 1266 HSP 2 Score: 129.4 bits (324), Expect = 4.800e-26 Identity = 76/229 (33.19%), Postives = 115/229 (50.22%), Query Frame = 0 Query: 54 EGCFDRFDALTEIPLTTSLIGLHNNRRCQAACGVQGYALAATCSKPLRCFCGNDYPSAFHQVDVGKCNAPCNPDHVSCLLMTCCGSRDGQLFTVSFTGRQNILLQVLRQLSFDYRTSAPTFRRKIERSFVDSSAL--------EVVNSNTQHSLLVTGRPCSLNSTNASNAWFQDACYSLYWASRLNYADAERKCQQENHDSRVVVPVSAEENQFVARLQCGCQGWLGI 275 EGCF+ F L +I + NN RC+A C G++++AT ++ C CGN+YPS FH+V +C+ PC+PD C CCG G+ FTVSF ++ LQ+LR L+FDYR F++ +E +++L E ++S + V G N A + ACY +++ A+ CQ N + + + +EN FV L G GWLG+ Sbjct: 89 EGCFNDFFTLLQISYGGAGQESLNNIRCRARCAASGFSMSATSAQ--SCHCGNNYPSVFHRVRDTQCSQPCSPDRTVCEESGCCGDAKGKYFTVSFAREIDVTLQLLRTLTFDYRVQNKLFQQHVEGRLASAASLMVASFDGVEAMSSTASTNAQVDGVIGFGNGCPTGWAVHKRACYKRVSGRLTDFSTAQATCQ--NMGGNLPMLKTVDENDFVRSLLNGQAGWLGM 313 The following BLAST results are available for this feature:
BLAST of NO13G02680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3 Position : 0 Zoom : x 1
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02680 ID=NO13G02680|Name=NO13G02680|organism=Nannochloropsis oceanica|type=gene|length=2664bpback to top protein sequence of NO13G02680.1 >NO13G02680.1-protein ID=NO13G02680.1-protein|Name=NO13G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=786bpback to top Synonyms
Publications
|