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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:738444..741107 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02680.1 vs.
Match: EWM29088.1 (wsc domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 284.6 bits (727), Expect = 9.000e-73 Identity = 221/775 (28.52%), Postives = 351/775 (45.29%), Query Frame = 0
Query: 43 RLQEGMGDGHVEGCFDRFDALTEIPLTTSLIGLHNNRRCQAACGVQGYALAATCSKPLR-CFCGNDYPSAFHQVDVGKCNAPCNPDHVSCLLMTCCGSRDGQLFTVSFTGRQNILLQVLRQLSFDYRTSAPTFRRKIERSFV---DSSALEVVNSN----TQHSLLVTGRPCSLNSTNASNAWFQDACYSLYWASRLNYADAERKCQQENHDSRVVVPVSAEENQFVARLQCGCQGWLGIDTMLIDNSNVGPQLLHYQNWTASASVSEVGPCGQLRADGAWVKRPCIQNDGLLADNADDNKDDDYVEGSVKTPHSSNCFVCKRIRRQGEDRAVTLAAASTELSDAWRLERVMEGTRPNVIF--------MHVRHDSTGNYLACNPDDGGLHIVRADEGEAATFVAVINERDGSFTLEEH--SLYVALLDDNSLAC--LDAKKEGKRGYSSASE----------TPNAAVFKPTCMLRVLAAHFLRLSIVTL-----SNDLHYRGRRECSVAVFDTTPSTPSLRCQ-----SAPQFAGGESTADDELWLEQQALLVYDESRWLQPRTPLPFGRLKCINEHPRQSTICTLAYGQGFTVARALTIDWNNIIFDSITVRANSQAALQTKFRYR---------GFTGASDEDN----NESEDLSAASKEWANDFTTVFNNFYELAMVYAYVGTRNWQMTLLALPLTTHIVQFWLEVVMLRYRWRALFQARGSFRVMYFDQPI----GTQHDIGDVSNYDDIFFYIFGRYDFPVEASLITT 761
+L G D VEGCF+ F A + L + +N RCQA C +GYALAAT C+CGNDYP H+VD +C+ PC+ D +C L TCCG R+G LFT+S+ G N + +L +LS +YR+S FR+ I ++ + S+ ++ S+ L G C + + W CY +WA Y +A+ KCQ E +V S+ +N FV L GC GWL I++ G L QN+ +S + QL+ DG+W+ P +D +A CF C++ A +D W +E P+ + ++++ +T YL C D L++ E + I+ G+ T H ++ + N L C L + R + S + A+F P+ + + H+LR+++ +L S + RG +ECS+AV+D +P + + C+ +A G + L +Q+AL VYD+S ++ R PLP GR+ C+N++P ++ C LAYG+ + R ++ ++FD++ + + +FR++ G A E NE + LS K N T FN FY+ V R WQ+ + PLT +Q W+ L+YRWRA+FQ RG F + F + + G +GD+ +DI + ++G Y+ PVE +L T
Sbjct: 51 KLAIGGKDEQVEGCFNNFIAKFAVSLAQNNF---SNLRCQAICTERGYALAATGGGSQSICWCGNDYPGLPHEVDTFRCDRPCSLDKKTCHLFTCCGDRNGSLFTISWNGEVNPVKHLLGRLSEEYRSST-IFRQNIINDYLLSDNRSSFQLCASDKLPENPPLYLSVGNGCPVGWCK-RDGW----CYKQHWADPSTYDEAQDKCQLEG--GELVNVRSSVQNAFVLSLYAGCLGWLHIESYY-----EGATLHIDQNF---GEISHL----QLKPDGSWIALPGYDSDRRVA-----------------------CFACQKA------CTPPFPALRPHEADEWDIE---ISAYPSSTYAWCTDCADSYLKNVNTHLYL-CVDDQYHLYLSMQPESSWCIWTIKIDPDTGAITFLSHHNAILTYQAERNELTCRSLPSMYHVSRSFVSRNHLMFDGSFLNAPDGLAIFNPSSLPLSIKEHYLRIAVHSLNRRSKSAFIAPRGLQECSMAVWDMSPQSDTFMCRPLVVDNADIGVLGSAATISPLVFKQKALHVYDQSSYVTAREPLPNGRVTCLNQNPTETVSCVLAYGRAIILIRRFRTNFGILLFDTVADLFQVSSEQKQRFRFQTDLKTRRPEGNVVAGKERRRSRPNEVDFLSEQGKLVQNALTGSFNTFYQFLFFKELVDVRTWQLGINVAPLTALTIQLWMTTQYLKYRWRAVFQPRGGFTLTLFGRRLSGQKGATFSLGDLVVSNDILYSMYGSYEEPVEVALTMT 769
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02680.1 ID=NO13G02680.1|Name=NO13G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2575bp
ACAGGGTCCCTCCAGGTTCAGTCTACTGCCCGATCCACTGTCTCTCCCGT
TTCCAAGCTCGACCCGGATGGTCTTGCAGAGACGAGGGGAGCGCCCTCTC
AGTGCATGATTGACGCGTGCGGTTGCCGAAACATTACATCCTGTACTCTT
TTTGTTTTTGGGTGTGTGCTGTTTTGGATCTTGCGTATCGGCGTGGCAGC
TGATTCGAATTCGACGTCGTCATCCAGGAGGAGGCTGCAGGAGGGCATGG
GAGACGGGCATGTGGAGGGCTGCTTTGACCGTTTCGATGCCCTTACCGAG
ATCCCACTGACAACTTCTTTGATTGGATTGCACAATAATCGCCGCTGTCA
AGCTGCCTGTGGTGTGCAAGGGTACGCGCTTGCAGCCACCTGCTCAAAAC
CCCTCAGATGCTTTTGTGGGAATGACTACCCCAGTGCCTTCCACCAGGTG
GACGTGGGCAAGTGTAACGCTCCCTGCAACCCAGACCATGTTTCTTGTTT
GCTTATGACCTGCTGTGGTAGCCGTGACGGCCAACTTTTCACCGTGAGCT
TTACTGGCAGGCAGAATATCCTTCTTCAGGTGCTGCGACAACTATCTTTC
GACTACCGCACCAGCGCGCCGACCTTCCGCCGGAAAATAGAGCGCTCTTT
TGTGGATAGCTCGGCCCTTGAAGTCGTCAACAGCAACACACAACATTCGT
TGCTGGTCACCGGAAGGCCTTGTTCATTGAACTCAACCAATGCCTCCAAC
GCATGGTTTCAAGATGCATGTTACTCGCTGTATTGGGCTTCAAGATTGAA
CTACGCCGATGCCGAGCGCAAATGCCAACAGGAGAATCACGATTCGCGAG
TCGTAGTGCCTGTGTCTGCGGAAGAAAATCAGTTTGTGGCTCGGCTTCAG
TGTGGATGCCAAGGATGGCTGGGTATCGACACGATGTTAATCGACAATTC
CAATGTAGGGCCACAGCTTCTGCATTATCAGAACTGGACAGCATCTGCTT
CAGTGTCGGAAGTAGGTCCATGCGGGCAACTACGAGCCGACGGAGCGTGG
GTGAAGCGTCCTTGTATCCAAAATGACGGTCTCCTAGCCGACAATGCTGA
CGACAACAAGGACGATGACTACGTGGAAGGCAGTGTCAAGACTCCGCACA
GCAGCAATTGTTTTGTGTGCAAACGGATCCGACGACAAGGCGAAGACAGG
GCCGTGACTCTAGCAGCCGCTTCCACAGAACTTTCCGATGCGTGGCGATT
GGAGCGTGTGATGGAAGGTACCCGACCGAATGTAATCTTTATGCATGTGC
GTCATGATTCTACAGGCAACTACCTGGCCTGTAATCCTGACGACGGCGGT
TTACACATTGTGAGGGCTGATGAGGGTGAAGCGGCTACATTTGTCGCGGT
TATAAACGAAAGGGACGGGTCCTTTACGTTGGAGGAGCACTCTCTTTATG
TTGCCTTACTCGATGACAATAGTTTAGCTTGCCTAGACGCGAAAAAGGAG
GGGAAGAGAGGGTACTCCAGTGCTTCCGAGACCCCAAATGCGGCAGTATT
CAAGCCCACATGCATGCTGCGCGTTTTGGCCGCTCACTTTCTTCGGTTAT
CCATCGTGACATTAAGTAACGACCTGCACTATCGGGGCCGGCGTGAATGC
TCCGTGGCTGTCTTTGATACGACACCCTCTACTCCTTCATTACGTTGCCA
GTCGGCCCCGCAATTTGCTGGGGGTGAGTCTACCGCGGACGATGAGCTGT
GGCTGGAGCAGCAAGCTTTACTAGTCTATGACGAGAGCCGTTGGCTACAG
CCTCGAACCCCATTGCCCTTTGGCCGCCTCAAATGCATAAACGAACATCC
CCGACAGAGCACCATTTGTACCCTCGCCTACGGCCAAGGCTTTACGGTGG
CCCGCGCATTGACTATAGATTGGAACAACATCATCTTTGACTCCATCACC
GTCCGGGCAAATAGTCAAGCGGCCTTGCAAACTAAGTTTCGGTACCGGGG
CTTTACTGGGGCCAGCGACGAGGATAATAATGAGTCGGAGGACCTTTCGG
CTGCCTCGAAGGAGTGGGCAAATGACTTTACCACGGTTTTCAACAACTTC
TATGAATTAGCTATGGTGTATGCCTACGTCGGAACGCGCAATTGGCAAAT
GACCTTGCTGGCCTTGCCGCTGACAACGCACATAGTCCAGTTCTGGTTGG
AGGTGGTCATGCTAAGATATCGATGGAGGGCCTTGTTCCAGGCCCGGGGC
AGCTTCCGAGTCATGTATTTCGACCAGCCCATTGGTACACAGCACGACAT
CGGAGACGTGTCAAATTACGACGACATATTTTTCTACATTTTTGGACGTT
ATGATTTTCCTGTGGAAGCTTCACTTATTACCACGCTCGACAATCAGGAG
GAACGAAACTGGCCGGTGCCGCTGCCAACATCCAGTGTAGTCGAAGAAGG
ATCGGGGGGGTGACAGCAGGGGCGGCTCACTGGGTTTCCACGTTAGAGTA
GAGATGGAGGACTTAACATCATGCTTCCTATTTATTTTTTGAAGGGTATA
AAGAGAAGCAAAGCAAATATACCAT back to topprotein sequence of NO13G02680.1 >NO13G02680.1-protein ID=NO13G02680.1-protein|Name=NO13G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=786bp
MIDACGCRNITSCTLFVFGCVLFWILRIGVAADSNSTSSSRRRLQEGMGD
GHVEGCFDRFDALTEIPLTTSLIGLHNNRRCQAACGVQGYALAATCSKPL
RCFCGNDYPSAFHQVDVGKCNAPCNPDHVSCLLMTCCGSRDGQLFTVSFT
GRQNILLQVLRQLSFDYRTSAPTFRRKIERSFVDSSALEVVNSNTQHSLL
VTGRPCSLNSTNASNAWFQDACYSLYWASRLNYADAERKCQQENHDSRVV
VPVSAEENQFVARLQCGCQGWLGIDTMLIDNSNVGPQLLHYQNWTASASV
SEVGPCGQLRADGAWVKRPCIQNDGLLADNADDNKDDDYVEGSVKTPHSS
NCFVCKRIRRQGEDRAVTLAAASTELSDAWRLERVMEGTRPNVIFMHVRH
DSTGNYLACNPDDGGLHIVRADEGEAATFVAVINERDGSFTLEEHSLYVA
LLDDNSLACLDAKKEGKRGYSSASETPNAAVFKPTCMLRVLAAHFLRLSI
VTLSNDLHYRGRRECSVAVFDTTPSTPSLRCQSAPQFAGGESTADDELWL
EQQALLVYDESRWLQPRTPLPFGRLKCINEHPRQSTICTLAYGQGFTVAR
ALTIDWNNIIFDSITVRANSQAALQTKFRYRGFTGASDEDNNESEDLSAA
SKEWANDFTTVFNNFYELAMVYAYVGTRNWQMTLLALPLTTHIVQFWLEV
VMLRYRWRALFQARGSFRVMYFDQPIGTQHDIGDVSNYDDIFFYIFGRYD
FPVEASLITTLDNQEERNWPVPLPTSSVVEEGSGG* back to topmRNA from alignment at chr13:738444..741107+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02680.1 ID=NO13G02680.1|Name=NO13G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2664bp|location=Sequence derived from alignment at chr13:738444..741107+ (Nannochloropsis oceanica)
ACAGGGTCCCTCCAGGTTCAGTCTACTGCCCGATCCACTGTCTCTCCCGT
TTCCAAGCTCGACCCGGATGGTCTTGCAGAGACGAGGGGAGCGCCCTCTC
AGTGCATGATTGACGCGTGCGGTTGCCGAAACATTACATCCTGTACTCTT
TTTGTTTTTGGGTGTGTGCTGTTTTGGATCTTGCGTATCGGCGTGGCAGC
TGATTCGAATTCGACGTCGTCATCCAGGAGGAGGCTGCAGGAGGGCATGG
GAGACGGGCATGTGGAGGGCTGCTTTGACCGTTTCGATGCCCTTACCGAG
ATCCCACTGACAACTTCTTTGATTGGATTGCACAATAATCGCCGCTGTCA
AGCTGCCTGTGGTGTGCAAGGGTACGCGCTTGCAGCCACCTGCTCAAAAC
CCCTCAGATGCTTTTGTGGGAATGACTACCCCAGTGCCTTCCACCAGGTA
ATAATGCGGCCTGCGTGTTTGCCTTTCTATAGCTTTTACGCTACTTTTAT
ATTCAAACACTAAATACATCCCTTACACCCTATTAGGTGGACGTGGGCAA
GTGTAACGCTCCCTGCAACCCAGACCATGTTTCTTGTTTGCTTATGACCT
GCTGTGGTAGCCGTGACGGCCAACTTTTCACCGTGAGCTTTACTGGCAGG
CAGAATATCCTTCTTCAGGTGCTGCGACAACTATCTTTCGACTACCGCAC
CAGCGCGCCGACCTTCCGCCGGAAAATAGAGCGCTCTTTTGTGGATAGCT
CGGCCCTTGAAGTCGTCAACAGCAACACACAACATTCGTTGCTGGTCACC
GGAAGGCCTTGTTCATTGAACTCAACCAATGCCTCCAACGCATGGTTTCA
AGATGCATGTTACTCGCTGTATTGGGCTTCAAGATTGAACTACGCCGATG
CCGAGCGCAAATGCCAACAGGAGAATCACGATTCGCGAGTCGTAGTGCCT
GTGTCTGCGGAAGAAAATCAGTTTGTGGCTCGGCTTCAGTGTGGATGCCA
AGGATGGCTGGGTATCGACACGATGTTAATCGACAATTCCAATGTAGGGC
CACAGCTTCTGCATTATCAGAACTGGACAGCATCTGCTTCAGTGTCGGAA
GTAGGTCCATGCGGGCAACTACGAGCCGACGGAGCGTGGGTGAAGCGTCC
TTGTATCCAAAATGACGGTCTCCTAGCCGACAATGCTGACGACAACAAGG
ACGATGACTACGTGGAAGGCAGTGTCAAGACTCCGCACAGCAGCAATTGT
TTTGTGTGCAAACGGATCCGACGACAAGGCGAAGACAGGGCCGTGACTCT
AGCAGCCGCTTCCACAGAACTTTCCGATGCGTGGCGATTGGAGCGTGTGA
TGGAAGGTACCCGACCGAATGTAATCTTTATGCATGTGCGTCATGATTCT
ACAGGCAACTACCTGGCCTGTAATCCTGACGACGGCGGTTTACACATTGT
GAGGGCTGATGAGGGTGAAGCGGCTACATTTGTCGCGGTTATAAACGAAA
GGGACGGGTCCTTTACGTTGGAGGAGCACTCTCTTTATGTTGCCTTACTC
GATGACAATAGTTTAGCTTGCCTAGACGCGAAAAAGGAGGGGAAGAGAGG
GTACTCCAGTGCTTCCGAGACCCCAAATGCGGCAGTATTCAAGCCCACAT
GCATGCTGCGCGTTTTGGCCGCTCACTTTCTTCGGTTATCCATCGTGACA
TTAAGTAACGACCTGCACTATCGGGGCCGGCGTGAATGCTCCGTGGCTGT
CTTTGATACGACACCCTCTACTCCTTCATTACGTTGCCAGTCGGCCCCGC
AATTTGCTGGGGGTGAGTCTACCGCGGACGATGAGCTGTGGCTGGAGCAG
CAAGCTTTACTAGTCTATGACGAGAGCCGTTGGCTACAGCCTCGAACCCC
ATTGCCCTTTGGCCGCCTCAAATGCATAAACGAACATCCCCGACAGAGCA
CCATTTGTACCCTCGCCTACGGCCAAGGCTTTACGGTGGCCCGCGCATTG
ACTATAGATTGGAACAACATCATCTTTGACTCCATCACCGTCCGGGCAAA
TAGTCAAGCGGCCTTGCAAACTAAGTTTCGGTACCGGGGCTTTACTGGGG
CCAGCGACGAGGATAATAATGAGTCGGAGGACCTTTCGGCTGCCTCGAAG
GAGTGGGCAAATGACTTTACCACGGTTTTCAACAACTTCTATGAATTAGC
TATGGTGTATGCCTACGTCGGAACGCGCAATTGGCAAATGACCTTGCTGG
CCTTGCCGCTGACAACGCACATAGTCCAGTTCTGGTTGGAGGTGGTCATG
CTAAGATATCGATGGAGGGCCTTGTTCCAGGCCCGGGGCAGCTTCCGAGT
CATGTATTTCGACCAGCCCATTGGTACACAGCACGACATCGGAGACGTGT
CAAATTACGACGACATATTTTTCTACATTTTTGGACGTTATGATTTTCCT
GTGGAAGCTTCACTTATTACCACGCTCGACAATCAGGAGGAACGAAACTG
GCCGGTGCCGCTGCCAACATCCAGTGTAGTCGAAGAAGGATCGGGGGGGT
GACAGCAGGGGCGGCTCACTGGGTTTCCACGTTAGAGTAGAGATGGAGGA
CTTAACATCATGCTTCCTATTTATTTTTTGAAGGGTATAAAGAGAAGCAA
AGCAAATATACCAT back to topCoding sequence (CDS) from alignment at chr13:738444..741107+ >NO13G02680.1 ID=NO13G02680.1|Name=NO13G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at chr13:738444..741107+ (Nannochloropsis oceanica)
ATGATTGACGCGTGCGGTTGCCGAAACATTACATCCTGTACTCTTTTTGT
TTTTGGGTGTGTGCTGTTTTGGATCTTGCGTATCGGCGTGGCAGCTGATT
CGAATTCGACGTCGTCATCCAGGAGGAGGCTGCAGGAGGGCATGGGAGAC
GGGCATGTGGAGGGCTGCTTTGACCGTTTCGATGCCCTTACCGAGATCCC
ACTGACAACTTCTTTGATTGGATTGCACAATAATCGCCGCTGTCAAGCTG
CCTGTGGTGTGCAAGGGTACGCGCTTGCAGCCACCTGCTCAAAACCCCTC
AGATGCTTTTGTGGGAATGACTACCCCAGTGCCTTCCACCAGGTGGACGT
GGGCAAGTGTAACGCTCCCTGCAACCCAGACCATGTTTCTTGTTTGCTTA
TGACCTGCTGTGGTAGCCGTGACGGCCAACTTTTCACCGTGAGCTTTACT
GGCAGGCAGAATATCCTTCTTCAGGTGCTGCGACAACTATCTTTCGACTA
CCGCACCAGCGCGCCGACCTTCCGCCGGAAAATAGAGCGCTCTTTTGTGG
ATAGCTCGGCCCTTGAAGTCGTCAACAGCAACACACAACATTCGTTGCTG
GTCACCGGAAGGCCTTGTTCATTGAACTCAACCAATGCCTCCAACGCATG
GTTTCAAGATGCATGTTACTCGCTGTATTGGGCTTCAAGATTGAACTACG
CCGATGCCGAGCGCAAATGCCAACAGGAGAATCACGATTCGCGAGTCGTA
GTGCCTGTGTCTGCGGAAGAAAATCAGTTTGTGGCTCGGCTTCAGTGTGG
ATGCCAAGGATGGCTGGGTATCGACACGATGTTAATCGACAATTCCAATG
TAGGGCCACAGCTTCTGCATTATCAGAACTGGACAGCATCTGCTTCAGTG
TCGGAAGTAGGTCCATGCGGGCAACTACGAGCCGACGGAGCGTGGGTGAA
GCGTCCTTGTATCCAAAATGACGGTCTCCTAGCCGACAATGCTGACGACA
ACAAGGACGATGACTACGTGGAAGGCAGTGTCAAGACTCCGCACAGCAGC
AATTGTTTTGTGTGCAAACGGATCCGACGACAAGGCGAAGACAGGGCCGT
GACTCTAGCAGCCGCTTCCACAGAACTTTCCGATGCGTGGCGATTGGAGC
GTGTGATGGAAGGTACCCGACCGAATGTAATCTTTATGCATGTGCGTCAT
GATTCTACAGGCAACTACCTGGCCTGTAATCCTGACGACGGCGGTTTACA
CATTGTGAGGGCTGATGAGGGTGAAGCGGCTACATTTGTCGCGGTTATAA
ACGAAAGGGACGGGTCCTTTACGTTGGAGGAGCACTCTCTTTATGTTGCC
TTACTCGATGACAATAGTTTAGCTTGCCTAGACGCGAAAAAGGAGGGGAA
GAGAGGGTACTCCAGTGCTTCCGAGACCCCAAATGCGGCAGTATTCAAGC
CCACATGCATGCTGCGCGTTTTGGCCGCTCACTTTCTTCGGTTATCCATC
GTGACATTAAGTAACGACCTGCACTATCGGGGCCGGCGTGAATGCTCCGT
GGCTGTCTTTGATACGACACCCTCTACTCCTTCATTACGTTGCCAGTCGG
CCCCGCAATTTGCTGGGGGTGAGTCTACCGCGGACGATGAGCTGTGGCTG
GAGCAGCAAGCTTTACTAGTCTATGACGAGAGCCGTTGGCTACAGCCTCG
AACCCCATTGCCCTTTGGCCGCCTCAAATGCATAAACGAACATCCCCGAC
AGAGCACCATTTGTACCCTCGCCTACGGCCAAGGCTTTACGGTGGCCCGC
GCATTGACTATAGATTGGAACAACATCATCTTTGACTCCATCACCGTCCG
GGCAAATAGTCAAGCGGCCTTGCAAACTAAGTTTCGGTACCGGGGCTTTA
CTGGGGCCAGCGACGAGGATAATAATGAGTCGGAGGACCTTTCGGCTGCC
TCGAAGGAGTGGGCAAATGACTTTACCACGGTTTTCAACAACTTCTATGA
ATTAGCTATGGTGTATGCCTACGTCGGAACGCGCAATTGGCAAATGACCT
TGCTGGCCTTGCCGCTGACAACGCACATAGTCCAGTTCTGGTTGGAGGTG
GTCATGCTAAGATATCGATGGAGGGCCTTGTTCCAGGCCCGGGGCAGCTT
CCGAGTCATGTATTTCGACCAGCCCATTGGTACACAGCACGACATCGGAG
ACGTGTCAAATTACGACGACATATTTTTCTACATTTTTGGACGTTATGAT
TTTCCTGTGGAAGCTTCACTTATTACCACGCTCGACAATCAGGAGGAACG
AAACTGGCCGGTGCCGCTGCCAACATCCAGTGTAGTCGAAGAAGGATCGG
GGGGGTGA back to top
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