NO13G02550, NO13G02550 (gene) Nannochloropsis oceanica

Overview
NameNO13G02550
Unique NameNO13G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2210
Alignment locationchr13:708606..710815 -

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Properties
Property NameValue
DescriptionGDT1-like protein 2, chloroplastic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:708606..710815 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001727UPF0016
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO13G02550 vs. NCBI_GenBank
Match: EWM21904.1 (uncharacterized protein Naga_100070g13 [Nannochloropsis gaditana])

HSP 1 Score: 260.0 bits (663), Expect = 9.300e-66
Identity = 158/258 (61.24%), Postives = 190/258 (73.64%), Query Frame = 0
Query:    1 MAFRKNICCLALLATLAICASARRPSAATGFVLPTASHA------SLWTKSAMRPSASYLRVAETQEQEKQQ-PLY--PRNTKSSRRSSNLIPVPTQNLGPQSGGMEKKLGDSLIKGFKKASAVGLAVVLSGIILVGSMPVVSHAASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250
            M+FRK     ++LA + +C S R  SA  GFV     H       ++ T+  +R SA  L+ +E+ E+E Q  PLY       ++  +S  + + T++   + G +E+ LG  ++KGFKK  AVGLAV L+GI+L+  MP+ +HAASASLA+LTAGAS SYN+VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQ FHAIP GL GGFKFDQWVAV AFSYFGLKTLK
Sbjct:    1 MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLK 258          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: OEU11457.1 (UPF0016-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 122.1 bits (305), Expect = 3.000e-24
Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 0
Query:  156 VAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGG-------FKFDQWVAVLAFSYFGLKTL 249
            +AKLA +GF QAFSLVFVSEIGDKTFF+AGLLAMKTSR+ISF GSM AL VMT+ISV+IGQ FHA+P+GL GG          D   AV+AF++FG KT+
Sbjct:    1 MAKLADTGFYQAFSLVFVSEIGDKTFFMAGLLAMKTSRVISFIGSMGALFVMTLISVIIGQTFHAVPAGLLGGESSFLGSLPLDDIAAVIAFAFFGFKTI 100          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: XP_002180132.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC48323.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 120.2 bits (300), Expect = 1.200e-23
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 0
Query:  163 GFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTL 249
            GF QAFSLVF+SEIGDKTFF+AGLLA +TSR ISF GSM AL+ MT+ISVLIGQ+FH +P+GLA G   D   AV+AF++FG+KTL
Sbjct:    1 GFYQAFSLVFLSEIGDKTFFVAGLLAAQTSRFISFVGSMGALATMTVISVLIGQIFHKVPAGLADGIPLDDIAAVIAFAFFGIKTL 86          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: CBN77341.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.5 bits (288), Expect = 2.800e-22
Identity = 67/122 (54.92%), Postives = 87/122 (71.31%), Query Frame = 0
Query:  129 SMPVVSHAASASLAELTAGASSSYN-SVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250
            S  ++ HAA A+       AS++ + ++V +L +SGF QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+ AL+VMT+++VL+G  FH++PS    G   D  +A  AF YFG+ TLK
Sbjct:  104 SCQLLPHAAVAATETAVPIASAAVDGTLVERLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLK 225          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: GAX19824.1 (hypothetical protein FisN_11Lh307 [Fistulifera solaris])

HSP 1 Score: 108.2 bits (269), Expect = 4.500e-20
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 0
Query:  159 LAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250
            L  +GF QAF+LVF+SEIGDKTFF+AGLL MK  R ISF GS+ AL+VMT++SVLIGQVFH +PS   G    D   A+ AF++FG+KTL+
Sbjct:   54 LTETGFYQAFTLVFLSEIGDKTFFVAGLLGMKLGRWISFVGSVGALAVMTVLSVLIGQVFHVMPSFGGGQIPLDDVAAIAAFAFFGIKTLQ 144          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: GAX12894.1 (hypothetical protein FisN_11Hh307 [Fistulifera solaris])

HSP 1 Score: 108.2 bits (269), Expect = 4.500e-20
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 0
Query:  159 LAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250
            L  +GF QAF+LVF+SEIGDKTFF+AGLL MK  R ISF GS+ AL+VMT++SVLIGQVFH +PS   G    D   A+ AF++FG+KTL+
Sbjct:   65 LTETGFYQAFTLVFLSEIGDKTFFVAGLLGMKLGRWISFVGSVGALAVMTVLSVLIGQVFHVMPSFGGGQIPLDDVAAIAAFAFFGIKTLQ 155          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: EJK48658.1 (hypothetical protein THAOC_32528 [Thalassiosira oceanica])

HSP 1 Score: 101.7 bits (252), Expect = 4.200e-18
Identity = 64/126 (50.79%), Postives = 84/126 (66.67%), Query Frame = 0
Query:  125 ILVGSMPVVSHA--ASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTL 249
            + V ++P  S+A  A A +  +T GA++S+                 LVF+SEIGDKTFF+A LLA K SR+ISF GS+ AL+VMTIISV+IGQVFHA+PS L+ G   D   AV+AF+YFG+K L
Sbjct:   58 LAVFTVPSASNAVVALADIGAITGGAAASH--------------LVYLVFLSEIGDKTFFVAALLAAKLSRVISFVGSLGALAVMTIISVVIGQVFHAVPSELSNGLPLDDVAAVIAFTYFGVKIL 169          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: XP_005778960.1 (hypothetical protein EMIHUDRAFT_205610 [Emiliania huxleyi CCMP1516] >XP_005779012.1 hypothetical protein EMIHUDRAFT_205689 [Emiliania huxleyi CCMP1516] >EOD26531.1 hypothetical protein EMIHUDRAFT_205610 [Emiliania huxleyi CCMP1516] >EOD26583.1 hypothetical protein EMIHUDRAFT_205689 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 101.3 bits (251), Expect = 5.500e-18
Identity = 47/92 (51.09%), Postives = 70/92 (76.09%), Query Frame = 0
Query:  157 AKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTL 249
            A +  S F+Q+ SL+F+SE+GDKTFFIA LLA + S+L++F G   AL++MT++SVLIGQ+FH +P+GL  G   D +VA+ +F +FG+K +
Sbjct:    8 ASILDSAFVQSTSLIFISELGDKTFFIAALLAARASKLLTFAGCAGALALMTVVSVLIGQIFHQVPAGLTRGLPLDDYVAIASFVFFGIKAI 99          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: XP_009618080.1 (PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Nicotiana tomentosiformis] >XP_016444157.1 PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tabacum] >XP_018631171.1 PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 99.8 bits (247), Expect = 1.600e-17
Identity = 76/193 (39.38%), Postives = 104/193 (53.89%), Query Frame = 0
Query:   74 KSSRRSSNLIPVPTQNLGPQSGGMEKKLGDSLIK---------GFKKASA--------VGLAVVLSGIILVGSMPVVSHAASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250
            K  +R S +IP    N+G  SG  E+  G+   K         G  K  A        + +A+VL G  LV            SL   T G  S   S++A  A SGF  AFSL+FVSEIGDKTFFIA LLAM+  R++   GSM ALS+MT++SV+IG++FH++P+         ++ AV    +FGLK++K
Sbjct:   53 KLHQRHSRIIPY-ASNVGVGSGNFEESQGNESQKISMDQPSADGSSKIEALPTQIPYPLSIALVLCGCSLV-----------FSLIAFTKGGPS---SLIAAFAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKRILVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVALLFFFGLKSIK 230          
BLAST of NO13G02550 vs. NCBI_GenBank
Match: XP_009771281.1 (PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 99.0 bits (245), Expect = 2.700e-17
Identity = 75/193 (38.86%), Postives = 104/193 (53.89%), Query Frame = 0
Query:   74 KSSRRSSNLIPVPTQNLGPQSGGMEKKLGDSLIK---------GFKKASA--------VGLAVVLSGIILVGSMPVVSHAASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250
            K  +R S ++P    N+G  SG  E+  G+   K         G  K  A        + +A+VL G  LV            SL   T G  S   S++A  A SGF  AFSL+FVSEIGDKTFFIA LLAM+  R++   GSM ALS+MT++SV+IG++FH++P+         ++ AV    +FGLK++K
Sbjct:   53 KLHQRHSRIVPY-ASNVGVGSGNFEESQGNESQKFSIDQPSADGSSKIEALPSQIPYPLSIALVLCGCSLV-----------FSLIAFTKGGPS---SLIAAFAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKRVLVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVALLFFFGLKSIK 230          
The following BLAST results are available for this feature:
BLAST of NO13G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21904.19.300e-6661.24uncharacterized protein Naga_100070g13 [Nannochlor... [more]
OEU11457.13.000e-2467.00UPF0016-domain-containing protein [Fragilariopsis ... [more]
XP_002180132.11.200e-2369.77predicted protein, partial [Phaeodactylum tricornu... [more]
CBN77341.12.800e-2254.92conserved unknown protein [Ectocarpus siliculosus][more]
GAX19824.14.500e-2061.54hypothetical protein FisN_11Lh307 [Fistulifera sol... [more]
GAX12894.14.500e-2061.54hypothetical protein FisN_11Hh307 [Fistulifera sol... [more]
EJK48658.14.200e-1850.79hypothetical protein THAOC_32528 [Thalassiosira oc... [more]
XP_005778960.15.500e-1851.09hypothetical protein EMIHUDRAFT_205610 [Emiliania ... [more]
XP_009618080.11.600e-1739.38PREDICTED: GDT1-like protein 2, chloroplastic isof... [more]
XP_009771281.12.700e-1738.86PREDICTED: GDT1-like protein 2, chloroplastic isof... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02550.2NO13G02550.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO13G02550.1NO13G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|111961gene_6755Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100070g13gene8519Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02550.2NO13G02550.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO13G02550.1NO13G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02550 ID=NO13G02550|Name=NO13G02550|organism=Nannochloropsis oceanica|type=gene|length=2210bp
ACAGGCATTTGGACGTTACCATGGCATTTCGTAAGAATATCTGTTGCCTC
GCCCTCCTTGCCACGCTTGCTATTTGTGCCAGgtaagtggatgcgaatgg
ggtcactcgggccatgcccgcctccttgtgactaagcacgattctcttta
cttcattgagcgcttacttactgcaattacacacctccttttccttcagT
GCGCGAAGACCAAGCGCAGCAACGGGTTTTGTCCTTCCTACCGCCAGCCA
CGCCTCTCTATgtaagtttctctgtgtgcttttccccagctaaaacgatc
ctgggggatcgaggacgatttatagctccctttcccctcccctacattta
ccaccattgccacattcaaccccacgtgatcctaacagGGACTAAATCTG
CCATGCGTCCTTCTGCATCCTACTTGCGGGTAGCCGAGgtgagttcttgt
gtattccctgcgatcggatggtgggaggagatctgcgaccaatgctagcg
agaagggaatattcttggggcaagcacaaaacaagcaagccgctcccgct
ccatgtcacatatcacatatagggtagagaattttctacttgccgcgcca
ctcactttgtcgttttccccttctatgaacagACGCAGGAACAGGAGAAG
CAGCAACCACTCTACCCAAGGAATACCAAGAGCAGCAGACGCAGCAGCAA
TTTGATCCCCGTCCCAACTCAAAATCTTGGCCCCCAAAGTGGAGGCATGG
AGAAAAAATTGGGGGACTCACTTATTAAGGGAgtaagtttatgtctgctg
ggagaaatatatcaaaacataaacataagtagaagacgaacgggttgggg
gtgtgcaaccgagatgagaccaatgagccacatgcaccctaacatgggcc
cttctatctctttctcccctctcctttcgaattatagTTCAAGAAGGCTA
GCGCCGTGGGCCTGGCTGTGGTGCTAAGCGGCATCATCTTAGTGGGGAGC
ATGCCGGTGGTCTCCCATGCTGCCTCCGCCTCACTAGCGGAATTAACGGC
CGGCGCTTCCTCCTCCTATAACAGCGTGGTGGCCAAGCTGGCTGCCTCGG
GGTTCTTGCAGgtaattagtagtacttaagaggctgtagaaacgtggact
gtgaggaaatttagggcaagaataaccctctttcattccctcccctcccc
tccccccccagGCCTTCTCCCTGGTGTTCGTCTCCGAGATTGGGGACAAG
ACCTTTTTCATCGCCGGTTTGTTGGCCATGAAGACGTCGAGGCTCATTTC
TTTCACCGGCTCGATGGCTGCGTTGTCAGTGATGACCATTATCTCAGTTT
TGATCGGCCAGGTGTTCCACGCTATCCCGTCGGGCCTGGCGGGCGGTTTC
AAATTTGACCAGTGGGTTGCTGTCCTAGCTTTTTCGTACTTTGGACTTAA
GACGCTCAAGGTAGGCAGGATAGGATGCATGCGAGTCTTCTCTTGGTCAT
TCCACCATAATTTCTTGCTCTTTGTGGCCGCTTCCCCCCCCGAAAAAAGC
TTTATACCACTCTTCTTGTTTCCCCATTCCTCTTTCATCTTCCCTCTTTC
TGCCACGTCAGGATTCGTACGAAATGGCGGACGGTGACTCTTCTGGCATG
GACGAAGAGCGGTCCGAGGCCGAGAAGGCCGTCGAGGAGTCCAGCGCCCC
GGAGCAGAGGACCCCCTGGGGCACCATCCTCCAAATTTTCTCCCTTGTTT
TCGCTGCTGAATTTGGTGACCGTTCGTTTTTGTCAACGATTGCCTTGGGT
GCTGCCCAGAACCCTTTTTCTGTGGCCACAGGGGCGATTGGAGCGCATGC
GACAGCTACGGGGATTGCAGTAGTCAGCGGGGCGTTCCTATCAAAGTACT
TTTCTGAAAAGGTTATTGGCTTTGTCGGTGGCTCACTTTTTGTCATTTTT
GCCGTGACCACCGCTTTGGGCATTTTCTAAAGTTCACTTGCTAAGTTGAA
GGGATAGGAGAGTGTCGGCGGGGGGAGGTCAAGGGAGGAAGACGTGAGGC
GTGGCGAGAAGCCAGATGCCAAAACTACAACAAATCTGATGCACAACTGA
CTGTAACAACGCGTTATGTCTATGCGCACACGCAACACAAAAGAATTTGA
ACACAATTAACACATTACGCTGATTAGGTGCCTTGTTTCTGCCTCCGCTT
TCTCGCTTCC
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protein sequence of NO13G02550.2

>NO13G02550.2-protein ID=NO13G02550.2-protein|Name=NO13G02550.2|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MAFRKNICCLALLATLAICASARRPSAATGFVLPTASHASLWTKSAMRPS
ASYLRVAETQEQEKQQPLYPRNTKSSRRSSNLIPVPTQNLGPQSGGMEKK
LGDSLIKGFKKASAVGLAVVLSGIILVGSMPVVSHAASASLAELTAGASS
SYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGS
MAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLKV
GRIGCMRVFSWSFHHNFLLFVAASPPEKSFIPLFLFPHSSFIFPLSATSG
FVRNGGR*
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protein sequence of NO13G02550.1

>NO13G02550.1-protein ID=NO13G02550.1-protein|Name=NO13G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MAFRKNICCLALLATLAICASARRPSAATGFVLPTASHASLWTKSAMRPS
ASYLRVAETQEQEKQQPLYPRNTKSSRRSSNLIPVPTQNLGPQSGGMEKK
LGDSLIKGFKKASAVGLAVVLSGIILVGSMPVVSHAASASLAELTAGASS
SYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGS
MAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLKD
SYEMADGDSSGMDEERSEAEKAVEESSAPEQRTPWGTILQIFSLVFAAEF
GDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVVSGAFLSKYFSEKV
IGFVGGSLFVIFAVTTALGIF*
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Synonyms
Publications