NO13G02550, NO13G02550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02550 vs. NCBI_GenBank
Match: EWM21904.1 (uncharacterized protein Naga_100070g13 [Nannochloropsis gaditana]) HSP 1 Score: 260.0 bits (663), Expect = 9.300e-66 Identity = 158/258 (61.24%), Postives = 190/258 (73.64%), Query Frame = 0 Query: 1 MAFRKNICCLALLATLAICASARRPSAATGFVLPTASHA------SLWTKSAMRPSASYLRVAETQEQEKQQ-PLY--PRNTKSSRRSSNLIPVPTQNLGPQSGGMEKKLGDSLIKGFKKASAVGLAVVLSGIILVGSMPVVSHAASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250 M+FRK ++LA + +C S R SA GFV H ++ T+ +R SA L+ +E+ E+E Q PLY ++ +S + + T++ + G +E+ LG ++KGFKK AVGLAV L+GI+L+ MP+ +HAASASLA+LTAGAS SYN+VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQ FHAIP GL GGFKFDQWVAV AFSYFGLKTLK Sbjct: 1 MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLK 258
BLAST of NO13G02550 vs. NCBI_GenBank
Match: OEU11457.1 (UPF0016-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 122.1 bits (305), Expect = 3.000e-24 Identity = 67/100 (67.00%), Postives = 79/100 (79.00%), Query Frame = 0 Query: 156 VAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGG-------FKFDQWVAVLAFSYFGLKTL 249 +AKLA +GF QAFSLVFVSEIGDKTFF+AGLLAMKTSR+ISF GSM AL VMT+ISV+IGQ FHA+P+GL GG D AV+AF++FG KT+ Sbjct: 1 MAKLADTGFYQAFSLVFVSEIGDKTFFMAGLLAMKTSRVISFIGSMGALFVMTLISVIIGQTFHAVPAGLLGGESSFLGSLPLDDIAAVIAFAFFGFKTI 100
BLAST of NO13G02550 vs. NCBI_GenBank
Match: XP_002180132.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC48323.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 120.2 bits (300), Expect = 1.200e-23 Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 0 Query: 163 GFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTL 249 GF QAFSLVF+SEIGDKTFF+AGLLA +TSR ISF GSM AL+ MT+ISVLIGQ+FH +P+GLA G D AV+AF++FG+KTL Sbjct: 1 GFYQAFSLVFLSEIGDKTFFVAGLLAAQTSRFISFVGSMGALATMTVISVLIGQIFHKVPAGLADGIPLDDIAAVIAFAFFGIKTL 86
BLAST of NO13G02550 vs. NCBI_GenBank
Match: CBN77341.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 115.5 bits (288), Expect = 2.800e-22 Identity = 67/122 (54.92%), Postives = 87/122 (71.31%), Query Frame = 0 Query: 129 SMPVVSHAASASLAELTAGASSSYN-SVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250 S ++ HAA A+ AS++ + ++V +L +SGF QAFSLVFVSEIGDKTFFIA LLA KTSRLISF GS+ AL+VMT+++VL+G FH++PS G D +A AF YFG+ TLK Sbjct: 104 SCQLLPHAAVAATETAVPIASAAVDGTLVERLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLK 225
BLAST of NO13G02550 vs. NCBI_GenBank
Match: GAX19824.1 (hypothetical protein FisN_11Lh307 [Fistulifera solaris]) HSP 1 Score: 108.2 bits (269), Expect = 4.500e-20 Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 0 Query: 159 LAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250 L +GF QAF+LVF+SEIGDKTFF+AGLL MK R ISF GS+ AL+VMT++SVLIGQVFH +PS G D A+ AF++FG+KTL+ Sbjct: 54 LTETGFYQAFTLVFLSEIGDKTFFVAGLLGMKLGRWISFVGSVGALAVMTVLSVLIGQVFHVMPSFGGGQIPLDDVAAIAAFAFFGIKTLQ 144
BLAST of NO13G02550 vs. NCBI_GenBank
Match: GAX12894.1 (hypothetical protein FisN_11Hh307 [Fistulifera solaris]) HSP 1 Score: 108.2 bits (269), Expect = 4.500e-20 Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 0 Query: 159 LAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250 L +GF QAF+LVF+SEIGDKTFF+AGLL MK R ISF GS+ AL+VMT++SVLIGQVFH +PS G D A+ AF++FG+KTL+ Sbjct: 65 LTETGFYQAFTLVFLSEIGDKTFFVAGLLGMKLGRWISFVGSVGALAVMTVLSVLIGQVFHVMPSFGGGQIPLDDVAAIAAFAFFGIKTLQ 155
BLAST of NO13G02550 vs. NCBI_GenBank
Match: EJK48658.1 (hypothetical protein THAOC_32528 [Thalassiosira oceanica]) HSP 1 Score: 101.7 bits (252), Expect = 4.200e-18 Identity = 64/126 (50.79%), Postives = 84/126 (66.67%), Query Frame = 0 Query: 125 ILVGSMPVVSHA--ASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTL 249 + V ++P S+A A A + +T GA++S+ LVF+SEIGDKTFF+A LLA K SR+ISF GS+ AL+VMTIISV+IGQVFHA+PS L+ G D AV+AF+YFG+K L Sbjct: 58 LAVFTVPSASNAVVALADIGAITGGAAASH--------------LVYLVFLSEIGDKTFFVAALLAAKLSRVISFVGSLGALAVMTIISVVIGQVFHAVPSELSNGLPLDDVAAVIAFTYFGVKIL 169
BLAST of NO13G02550 vs. NCBI_GenBank
Match: XP_005778960.1 (hypothetical protein EMIHUDRAFT_205610 [Emiliania huxleyi CCMP1516] >XP_005779012.1 hypothetical protein EMIHUDRAFT_205689 [Emiliania huxleyi CCMP1516] >EOD26531.1 hypothetical protein EMIHUDRAFT_205610 [Emiliania huxleyi CCMP1516] >EOD26583.1 hypothetical protein EMIHUDRAFT_205689 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 101.3 bits (251), Expect = 5.500e-18 Identity = 47/92 (51.09%), Postives = 70/92 (76.09%), Query Frame = 0 Query: 157 AKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTL 249 A + S F+Q+ SL+F+SE+GDKTFFIA LLA + S+L++F G AL++MT++SVLIGQ+FH +P+GL G D +VA+ +F +FG+K + Sbjct: 8 ASILDSAFVQSTSLIFISELGDKTFFIAALLAARASKLLTFAGCAGALALMTVVSVLIGQIFHQVPAGLTRGLPLDDYVAIASFVFFGIKAI 99
BLAST of NO13G02550 vs. NCBI_GenBank
Match: XP_009618080.1 (PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Nicotiana tomentosiformis] >XP_016444157.1 PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tabacum] >XP_018631171.1 PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Nicotiana tomentosiformis]) HSP 1 Score: 99.8 bits (247), Expect = 1.600e-17 Identity = 76/193 (39.38%), Postives = 104/193 (53.89%), Query Frame = 0 Query: 74 KSSRRSSNLIPVPTQNLGPQSGGMEKKLGDSLIK---------GFKKASA--------VGLAVVLSGIILVGSMPVVSHAASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250 K +R S +IP N+G SG E+ G+ K G K A + +A+VL G LV SL T G S S++A A SGF AFSL+FVSEIGDKTFFIA LLAM+ R++ GSM ALS+MT++SV+IG++FH++P+ ++ AV +FGLK++K Sbjct: 53 KLHQRHSRIIPY-ASNVGVGSGNFEESQGNESQKISMDQPSADGSSKIEALPTQIPYPLSIALVLCGCSLV-----------FSLIAFTKGGPS---SLIAAFAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKRILVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVALLFFFGLKSIK 230
BLAST of NO13G02550 vs. NCBI_GenBank
Match: XP_009771281.1 (PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Nicotiana sylvestris]) HSP 1 Score: 99.0 bits (245), Expect = 2.700e-17 Identity = 75/193 (38.86%), Postives = 104/193 (53.89%), Query Frame = 0 Query: 74 KSSRRSSNLIPVPTQNLGPQSGGMEKKLGDSLIK---------GFKKASA--------VGLAVVLSGIILVGSMPVVSHAASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLK 250 K +R S ++P N+G SG E+ G+ K G K A + +A+VL G LV SL T G S S++A A SGF AFSL+FVSEIGDKTFFIA LLAM+ R++ GSM ALS+MT++SV+IG++FH++P+ ++ AV +FGLK++K Sbjct: 53 KLHQRHSRIVPY-ASNVGVGSGNFEESQGNESQKFSIDQPSADGSSKIEALPSQIPYPLSIALVLCGCSLV-----------FSLIAFTKGGPS---SLIAAFAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKRVLVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVALLFFFGLKSIK 230 The following BLAST results are available for this feature:
BLAST of NO13G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02550 ID=NO13G02550|Name=NO13G02550|organism=Nannochloropsis oceanica|type=gene|length=2210bpback to top protein sequence of NO13G02550.2 >NO13G02550.2-protein ID=NO13G02550.2-protein|Name=NO13G02550.2|organism=Nannochloropsis oceanica|type=polypeptide|length=308bpback to top protein sequence of NO13G02550.1 >NO13G02550.1-protein ID=NO13G02550.1-protein|Name=NO13G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bpback to top Synonyms
Publications
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