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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:708606..710815 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02550.1 vs.
Match: EWM21904.1 (uncharacterized protein Naga_100070g13 [Nannochloropsis gaditana]) HSP 1 Score: 466.8 bits (1200), Expect = 6.100e-128 Identity = 268/380 (70.53%), Postives = 311/380 (81.84%), Query Frame = 0
Query: 1 MAFRKNICCLALLATLAICASARRPSAATGFVLPTASHAS------LWTKSAMRPSASYLRVAETQEQEKQQ-PLY--PRNTKSSRRSSNLIPVPTQNLGPQSGGMEKKLGDSLIKGFKKASAVGLAVVLSGIILVGSMPVVSHAASASLAELTAGASSSYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLKDSYEMADGDSSGMDEERSEAEKAVEESSAPEQRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVVSGAFLSKYFSEKVIGFVGGSLFVIFAVTTALGIF 372
M+FRK ++LA + +C S R SA GFV H + + T+ +R SA L+ +E+ E+E Q PLY ++ +S + + T++ + G +E+ LG ++KGFKK AVGLAV L+GI+L+ MP+ +HAASASLA+LTAGAS SYN+VVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQ FHAIP GL GGFKFDQWVAV AFSYFGLKTLKDSY+MADGDSSG+DEER+EAEKAV+ESSAPE+RTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAV SGAFLSKYFSEK+IG++GG+LF+IFA+TTALGIF
Sbjct: 1 MSFRKIFRGFSVLAAVLVCFSGRSGSAPVGFVTSPVHHTAALSFNAIGTRPGLRQSAFILQASESHEREGQHAPLYFWKEQHSATIAASKQLHMLTKHSEEKHGAVERSLGGVIVKGFKKVGAVGLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02550.1 ID=NO13G02550.1|Name=NO13G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp
ACAGGCATTTGGACGTTACCATGGCATTTCGTAAGAATATCTGTTGCCTC
GCCCTCCTTGCCACGCTTGCTATTTGTGCCAGTGCGCGAAGACCAAGCGC
AGCAACGGGTTTTGTCCTTCCTACCGCCAGCCACGCCTCTCTATGGACTA
AATCTGCCATGCGTCCTTCTGCATCCTACTTGCGGGTAGCCGAGACGCAG
GAACAGGAGAAGCAGCAACCACTCTACCCAAGGAATACCAAGAGCAGCAG
ACGCAGCAGCAATTTGATCCCCGTCCCAACTCAAAATCTTGGCCCCCAAA
GTGGAGGCATGGAGAAAAAATTGGGGGACTCACTTATTAAGGGATTCAAG
AAGGCTAGCGCCGTGGGCCTGGCTGTGGTGCTAAGCGGCATCATCTTAGT
GGGGAGCATGCCGGTGGTCTCCCATGCTGCCTCCGCCTCACTAGCGGAAT
TAACGGCCGGCGCTTCCTCCTCCTATAACAGCGTGGTGGCCAAGCTGGCT
GCCTCGGGGTTCTTGCAGGCCTTCTCCCTGGTGTTCGTCTCCGAGATTGG
GGACAAGACCTTTTTCATCGCCGGTTTGTTGGCCATGAAGACGTCGAGGC
TCATTTCTTTCACCGGCTCGATGGCTGCGTTGTCAGTGATGACCATTATC
TCAGTTTTGATCGGCCAGGTGTTCCACGCTATCCCGTCGGGCCTGGCGGG
CGGTTTCAAATTTGACCAGTGGGTTGCTGTCCTAGCTTTTTCGTACTTTG
GACTTAAGACGCTCAAGGATTCGTACGAAATGGCGGACGGTGACTCTTCT
GGCATGGACGAAGAGCGGTCCGAGGCCGAGAAGGCCGTCGAGGAGTCCAG
CGCCCCGGAGCAGAGGACCCCCTGGGGCACCATCCTCCAAATTTTCTCCC
TTGTTTTCGCTGCTGAATTTGGTGACCGTTCGTTTTTGTCAACGATTGCC
TTGGGTGCTGCCCAGAACCCTTTTTCTGTGGCCACAGGGGCGATTGGAGC
GCATGCGACAGCTACGGGGATTGCAGTAGTCAGCGGGGCGTTCCTATCAA
AGTACTTTTCTGAAAAGGTTATTGGCTTTGTCGGTGGCTCACTTTTTGTC
ATTTTTGCCGTGACCACCGCTTTGGGCATTTTCTAAAGTTCACTTGCTAA
GTTGAAGGGATAGGAGAGTGTCGGCGGGGGGAGGTCAAGGGAGGAAGACG
TGAGGCGTGGCGAGAAGCCAGATGCCAAAACTACAACAAATCTGATGCAC
AACTGACTGTAACAACGCGTTATGTCTATGCGCACACGCAACACAAAAGA
ATTTGAACACAATTAACACATTACGCTGATTAGGTGCCTTGTTTCTGCCT
CCGCTTTCTCGCTTCC back to topprotein sequence of NO13G02550.1 >NO13G02550.1-protein ID=NO13G02550.1-protein|Name=NO13G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MAFRKNICCLALLATLAICASARRPSAATGFVLPTASHASLWTKSAMRPS
ASYLRVAETQEQEKQQPLYPRNTKSSRRSSNLIPVPTQNLGPQSGGMEKK
LGDSLIKGFKKASAVGLAVVLSGIILVGSMPVVSHAASASLAELTAGASS
SYNSVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGS
MAALSVMTIISVLIGQVFHAIPSGLAGGFKFDQWVAVLAFSYFGLKTLKD
SYEMADGDSSGMDEERSEAEKAVEESSAPEQRTPWGTILQIFSLVFAAEF
GDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVVSGAFLSKYFSEKV
IGFVGGSLFVIFAVTTALGIF* back to topmRNA from alignment at chr13:708606..710815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02550.1 ID=NO13G02550.1|Name=NO13G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp|location=Sequence derived from alignment at chr13:708606..710815- (Nannochloropsis oceanica)
ACAGGCATTTGGACGTTACCATGGCATTTCGTAAGAATATCTGTTGCCTC
GCCCTCCTTGCCACGCTTGCTATTTGTGCCAGGTAAGTGGATGCGAATGG
GGTCACTCGGGCCATGCCCGCCTCCTTGTGACTAAGCACGATTCTCTTTA
CTTCATTGAGCGCTTACTTACTGCAATTACACACCTCCTTTTCCTTCAGT
GCGCGAAGACCAAGCGCAGCAACGGGTTTTGTCCTTCCTACCGCCAGCCA
CGCCTCTCTATGTAAGTTTCTCTGTGTGCTTTTCCCCAGCTAAAACGATC
CTGGGGGATCGAGGACGATTTATAGCTCCCTTTCCCCTCCCCTACATTTA
CCACCATTGCCACATTCAACCCCACGTGATCCTAACAGGGACTAAATCTG
CCATGCGTCCTTCTGCATCCTACTTGCGGGTAGCCGAGGTGAGTTCTTGT
GTATTCCCTGCGATCGGATGGTGGGAGGAGATCTGCGACCAATGCTAGCG
AGAAGGGAATATTCTTGGGGCAAGCACAAAACAAGCAAGCCGCTCCCGCT
CCATGTCACATATCACATATAGGGTAGAGAATTTTCTACTTGCCGCGCCA
CTCACTTTGTCGTTTTCCCCTTCTATGAACAGACGCAGGAACAGGAGAAG
CAGCAACCACTCTACCCAAGGAATACCAAGAGCAGCAGACGCAGCAGCAA
TTTGATCCCCGTCCCAACTCAAAATCTTGGCCCCCAAAGTGGAGGCATGG
AGAAAAAATTGGGGGACTCACTTATTAAGGGAGTAAGTTTATGTCTGCTG
GGAGAAATATATCAAAACATAAACATAAGTAGAAGACGAACGGGTTGGGG
GTGTGCAACCGAGATGAGACCAATGAGCCACATGCACCCTAACATGGGCC
CTTCTATCTCTTTCTCCCCTCTCCTTTCGAATTATAGTTCAAGAAGGCTA
GCGCCGTGGGCCTGGCTGTGGTGCTAAGCGGCATCATCTTAGTGGGGAGC
ATGCCGGTGGTCTCCCATGCTGCCTCCGCCTCACTAGCGGAATTAACGGC
CGGCGCTTCCTCCTCCTATAACAGCGTGGTGGCCAAGCTGGCTGCCTCGG
GGTTCTTGCAGGTAATTAGTAGTACTTAAGAGGCTGTAGAAACGTGGACT
GTGAGGAAATTTAGGGCAAGAATAACCCTCTTTCATTCCCTCCCCTCCCC
TCCCCCCCCAGGCCTTCTCCCTGGTGTTCGTCTCCGAGATTGGGGACAAG
ACCTTTTTCATCGCCGGTTTGTTGGCCATGAAGACGTCGAGGCTCATTTC
TTTCACCGGCTCGATGGCTGCGTTGTCAGTGATGACCATTATCTCAGTTT
TGATCGGCCAGGTGTTCCACGCTATCCCGTCGGGCCTGGCGGGCGGTTTC
AAATTTGACCAGTGGGTTGCTGTCCTAGCTTTTTCGTACTTTGGACTTAA
GACGCTCAAGGTAGGCAGGATAGGATGCATGCGAGTCTTCTCTTGGTCAT
TCCACCATAATTTCTTGCTCTTTGTGGCCGCTTCCCCCCCCGAAAAAAGC
TTTATACCACTCTTCTTGTTTCCCCATTCCTCTTTCATCTTCCCTCTTTC
TGCCACGTCAGGATTCGTACGAAATGGCGGACGGTGACTCTTCTGGCATG
GACGAAGAGCGGTCCGAGGCCGAGAAGGCCGTCGAGGAGTCCAGCGCCCC
GGAGCAGAGGACCCCCTGGGGCACCATCCTCCAAATTTTCTCCCTTGTTT
TCGCTGCTGAATTTGGTGACCGTTCGTTTTTGTCAACGATTGCCTTGGGT
GCTGCCCAGAACCCTTTTTCTGTGGCCACAGGGGCGATTGGAGCGCATGC
GACAGCTACGGGGATTGCAGTAGTCAGCGGGGCGTTCCTATCAAAGTACT
TTTCTGAAAAGGTTATTGGCTTTGTCGGTGGCTCACTTTTTGTCATTTTT
GCCGTGACCACCGCTTTGGGCATTTTCTAAAGTTCACTTGCTAAGTTGAA
GGGATAGGAGAGTGTCGGCGGGGGGAGGTCAAGGGAGGAAGACGTGAGGC
GTGGCGAGAAGCCAGATGCCAAAACTACAACAAATCTGATGCACAACTGA
CTGTAACAACGCGTTATGTCTATGCGCACACGCAACACAAAAGAATTTGA
ACACAATTAACACATTACGCTGATTAGGTGCCTTGTTTCTGCCTCCGCTT
TCTCGCTTCC back to topCoding sequence (CDS) from alignment at chr13:708606..710815- >NO13G02550.1 ID=NO13G02550.1|Name=NO13G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr13:708606..710815- (Nannochloropsis oceanica)
ATGGCATTTCGTAAGAATATCTGTTGCCTCGCCCTCCTTGCCACGCTTGC
TATTTGTGCCAGTGCGCGAAGACCAAGCGCAGCAACGGGTTTTGTCCTTC
CTACCGCCAGCCACGCCTCTCTATGGACTAAATCTGCCATGCGTCCTTCT
GCATCCTACTTGCGGGTAGCCGAGACGCAGGAACAGGAGAAGCAGCAACC
ACTCTACCCAAGGAATACCAAGAGCAGCAGACGCAGCAGCAATTTGATCC
CCGTCCCAACTCAAAATCTTGGCCCCCAAAGTGGAGGCATGGAGAAAAAA
TTGGGGGACTCACTTATTAAGGGATTCAAGAAGGCTAGCGCCGTGGGCCT
GGCTGTGGTGCTAAGCGGCATCATCTTAGTGGGGAGCATGCCGGTGGTCT
CCCATGCTGCCTCCGCCTCACTAGCGGAATTAACGGCCGGCGCTTCCTCC
TCCTATAACAGCGTGGTGGCCAAGCTGGCTGCCTCGGGGTTCTTGCAGGC
CTTCTCCCTGGTGTTCGTCTCCGAGATTGGGGACAAGACCTTTTTCATCG
CCGGTTTGTTGGCCATGAAGACGTCGAGGCTCATTTCTTTCACCGGCTCG
ATGGCTGCGTTGTCAGTGATGACCATTATCTCAGTTTTGATCGGCCAGGT
GTTCCACGCTATCCCGTCGGGCCTGGCGGGCGGTTTCAAATTTGACCAGT
GGGTTGCTGTCCTAGCTTTTTCGTACTTTGGACTTAAGACGCTCAAGGAT
TCGTACGAAATGGCGGACGGTGACTCTTCTGGCATGGACGAAGAGCGGTC
CGAGGCCGAGAAGGCCGTCGAGGAGTCCAGCGCCCCGGAGCAGAGGACCC
CCTGGGGCACCATCCTCCAAATTTTCTCCCTTGTTTTCGCTGCTGAATTT
GGTGACCGTTCGTTTTTGTCAACGATTGCCTTGGGTGCTGCCCAGAACCC
TTTTTCTGTGGCCACAGGGGCGATTGGAGCGCATGCGACAGCTACGGGGA
TTGCAGTAGTCAGCGGGGCGTTCCTATCAAAGTACTTTTCTGAAAAGGTT
ATTGGCTTTGTCGGTGGCTCACTTTTTGTCATTTTTGCCGTGACCACCGC
TTTGGGCATTTTCTAA back to top
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