NO13G02190, NO13G02190 (gene) Nannochloropsis oceanica

Overview
NameNO13G02190
Unique NameNO13G02190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr13:616032..616880 -

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Properties
Property NameValue
DescriptionSam-dependent methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:616032..616880 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Homology
BLAST of NO13G02190 vs. NCBI_GenBank
Match: EWM21873.1 (sam-dependent methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 294.7 bits (753), Expect = 3.100e-76
Identity = 163/297 (54.88%), Postives = 206/297 (69.36%), Query Frame = 0
Query:    1 MRWTRQL-----ATAAFAAHHLQHPSYSIFHKKLGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKY----ATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADKN------AGEDDSRQRKQSAILGETLRRRGQEDPQTLQVYGDYLAHHLAWFTAISRAQGGHVDITLSGNHVATFLVAIEQEMAALGV 283
            M WT  L     A AAFA       S +I  +KLGPRLSA Y LVP  A+G+VDVGCDHALL +ALAAGR HP+LR VIG+DKA +PL+VA QNLREH Y R E YPLTA L+LR G+GLEAL  ED   +DTLCMAG+GSGTI+ VL+SL KY    A  +YLVLQPFDSRP ++ EVRDCV+ Q F I++ERID+VN RWFVT+AA  N      AG+ +  +   + +LG+ L R  +ED +T Q+Y DYL HH  W+ +I +A+  +  +    ++V+ FL AIEQE++AL V
Sbjct:    1 MGWTGLLMPLKTAIAAFAFQKQASQSSTIL-QKLGPRLSAVYRLVPSHAKGIVDVGCDHALLGLALAAGRDHPNLRKVIGIDKALDPLDVARQNLREHAYSRIEKYPLTASLELRHGDGLEALIPEDVNLVDTLCMAGLGSGTIIEVLSSL-KYVREGAKFEYLVLQPFDSRPHYVNEVRDCVKSQGFSIQQERIDYVNSRWFVTMAASVNANKADKAGQCEKVRYNSTCMLGDALMRLAREDRRTHQIYADYLCHHRDWYASICKAR--NTRMPPEHDYVSQFLRAIEQEISALRV 293          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: WP_080840513.1 (SAM-dependent methyltransferase [Cohnella sp. 6021052837])

HSP 1 Score: 75.9 bits (185), Expect = 2.300e-10
Identity = 60/192 (31.25%), Postives = 98/192 (51.04%), Query Frame = 0
Query:   28 KLGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSL-SKYATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADKNAGEDDSRQRKQSAILG 219
            KL  RL+A  DLVP  AR + D+G DHALL + LAA  +   +   +  D  A P+  A + + E          L   + +R+G+G+  L   D G++DT+C+AG+G   IV +L +  S+   +  LVL P  +  Q    VR  +R + F++  E +   +G  +  + A K AG+    +R+ + + G
Sbjct:   12 KLSARLAALADLVPEGAR-LADIGTDHALLPVFLAATGK---ISFAVAGDVHAGPVEAARRQVAE--------AGLDGAISVRMGDGMSVL---DPGEVDTVCIAGMGGSLIVRILEAAGSRLDGVDTLVLSPHVAEDQ----VRRWLRERGFVLDIEELLEEDGEIYTLLRA-KRAGDGADAERRNAELYG 183          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: OFW76055.1 (hypothetical protein A2201_10330 [Alicyclobacillus sp. RIFOXYA1_FULL_53_8])

HSP 1 Score: 75.1 bits (183), Expect = 3.900e-10
Identity = 59/183 (32.24%), Postives = 101/183 (55.19%), Query Frame = 0
Query:   29 LGPRLSAAYDLVPHTARGVVDVGCDHALLCIALA-AGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSL-SKYATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWF--VTIAADKNAGEDD 208
            L  RL+A  + VP  +R +VDVG DHALL I+L  AG+    +   I  D A  P   A  N+R+H         L   + +R+G+GL ++     G++D + +AG+G    V +L+   +  ATL+ +V+QP ++    ++ VR  +R Q F + +E++ F +GR++  +T  + + AGE +
Sbjct:    4 LSMRLTALANQVPVGSR-IVDVGTDHALLPISLVEAGK----VSRAIATDVAQGPFQAAVANVRKH--------RLAEEISVRIGDGLASV---QPGEVDVVLIAGMGGSLAVQILSQTPAVTATLRRVVIQPMNA----VELVRIFLREQGFELVDEQVVFEDGRFYEILTAVSREEAGETE 166          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: AEG59456.1 (protein of unknown function DUF633 [Desulfotomaculum ruminis DSM 2154])

HSP 1 Score: 73.2 bits (178), Expect = 1.500e-9
Identity = 55/175 (31.43%), Postives = 84/175 (48.00%), Query Frame = 0
Query:   28 KLGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKYA-TLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADK 202
            KL  RL      VP  +  V D+G DH  L + L      P     +  D    PL  A  N+ EH          +  ++LRLG GLE L     G+++T+ +AG+G GTI  +LT+  + A T+K L+LQP         E+R  +    + +REE +   +GR +V + A++
Sbjct:   16 KLSNRLKLLASYVPQESI-VADIGTDHGYLPVYLVLKGICPR---AVAADINQGPLEAARSNILEH--------KASGLIELRLGNGLEVL---QPGEVETIIIAGMGGGTIRDILTASPEVAGTVKRLILQPMADE----MELRQYLLKSGWTLREEDLLLEDGRLYVVMVAER 171          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: CCZ27610.1 (putative uncharacterized protein [Firmicutes bacterium CAG:194])

HSP 1 Score: 73.2 bits (178), Expect = 1.500e-9
Identity = 60/211 (28.44%), Postives = 101/211 (47.87%), Query Frame = 0
Query:   29 LGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKYATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADKNAGEDDSRQRKQSAILGETLRRRGQEDPQTLQVYGDYL 240
            L  RL    D+V  T R V D+GCDH  + I L   ++  H   V+  D    PL+ A Q+++E          LT +++ RL +GL  +  ED  ++DT+ +AG+G   +  +L  L +   ++ LVLQP        +E+R  +  Q +LI EE +    G+++  + A +     ++  + Q A + E       E  Q +  +G YL
Sbjct:    7 LSNRLQTVADMV--TGRRVADIGCDHGFVSIYLVQAKKADH---VLAADVRPGPLSRAQQHIKE--------VQLTPYIETRLSDGLAGVTPED--RVDTVILAGMGGRLMRRILGELDR-LPVQELVLQPQSE----WEELRAFLYEQAYLIVEENMVLEEGKYYPVLRAVRK----ETAAKGQIAFI-EACENLPAEKRQVMHAFGPYL 192          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: WP_041275625.1 (SAM-dependent methyltransferase [Desulfotomaculum ruminis])

HSP 1 Score: 73.2 bits (178), Expect = 1.500e-9
Identity = 55/175 (31.43%), Postives = 84/175 (48.00%), Query Frame = 0
Query:   28 KLGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKYA-TLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADK 202
            KL  RL      VP  +  V D+G DH  L + L      P     +  D    PL  A  N+ EH          +  ++LRLG GLE L     G+++T+ +AG+G GTI  +LT+  + A T+K L+LQP         E+R  +    + +REE +   +GR +V + A++
Sbjct:    3 KLSNRLKLLASYVPQESI-VADIGTDHGYLPVYLVLKGICPR---AVAADINQGPLEAARSNILEH--------KASGLIELRLGNGLEVL---QPGEVETIIIAGMGGGTIRDILTASPEVAGTVKRLILQPMADE----MELRQYLLKSGWTLREEDLLLEDGRLYVVMVAER 158          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: OLA30027.1 (hypothetical protein BHW30_04980 [Firmicutes bacterium CAG_194_44_15])

HSP 1 Score: 73.2 bits (178), Expect = 1.500e-9
Identity = 60/211 (28.44%), Postives = 101/211 (47.87%), Query Frame = 0
Query:   29 LGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKYATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADKNAGEDDSRQRKQSAILGETLRRRGQEDPQTLQVYGDYL 240
            L  RL    D+V  T R V D+GCDH  + I L   ++  H   V+  D    PL+ A Q+++E          LT +++ RL +GL  +  ED  ++DT+ +AG+G   +  +L  L +   ++ LVLQP        +E+R  +  Q +LI EE +    G+++  + A +     ++  + Q A + E       E  Q +  +G YL
Sbjct:    6 LSNRLQTVADMV--TGRRVADIGCDHGFVSIYLVQAKKADH---VLAADVRPGPLSRAQQHIKE--------VQLTPYIETRLSDGLAGVTPED--RVDTVILAGMGGRLMRRILGELDR-LPVQELVLQPQSE----WEELRAFLYEQAYLIVEENMVLEEGKYYPVLRAVRK----ETAAKGQIAFI-EACENLPAEKRQVMHAFGPYL 191          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: CCY34338.1 (putative uncharacterized protein [Ruminococcus sp. CAG:60])

HSP 1 Score: 72.4 bits (176), Expect = 2.500e-9
Identity = 61/195 (31.28%), Postives = 94/195 (48.21%), Query Frame = 0
Query:   28 KLGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLT-SLSKYATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADKNAGEDDSRQRKQSAILGETL 222
            +L  RLSA  D+V  T   +VDVGCDH  L + L   ++ P   S I +D    PL+ A +++R+        Y L  ++  RL +GLE L A   G+ DTL +AG+G   +  +LT   S   +   ++LQP    P F    R  ++ Q F I EE++    G+++  +   +   E D  +   S     TL
Sbjct:    2 QLSLRLSAIADMVT-TGNRLVDVGCDHGYLPVYLIQQKKIP---SAIAMDVRKGPLSRAKEHIRQ--------YGLEEYIQTRLSDGLENLKA---GEGDTLVIAGMGGPLMERILTDGQSVRDSFSEMILQPQSDIPHF----RRFIQSQGFQIVEEKMVEEEGKFYPMMRVVRTCPEGDGNENLVSEAAPYTL 177          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: CEM11380.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 72.4 bits (176), Expect = 2.500e-9
Identity = 57/201 (28.36%), Postives = 95/201 (47.26%), Query Frame = 0
Query:   13 AAHHLQHPSYSIFHKKLGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVL--------------TSLSKYATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAA 200
            A    + P  S+  ++L  R     +L+P       D+GCDH LL   L    + P   + I +D+++     A   +        E + L+  +D+R G+GL AL A   G++DT+C+AG+G G I+ +L               SL +   ++ LV+QP   R   L  +R  +++  + I EER+  +  R +VTI A
Sbjct:   62 AGSSAEAPPLSLQEQRL-KRFITLAELIP-PGSPAADIGCDHGLLAAHLVHSGRCP---NAIAIDRSSSSCEAARSTV--------ERFALSHAVDVRQGDGLTALSA---GEVDTVCVAGMGVGGILDILKGPPQADSDPLSREDSLLRSLRIRTLVVQPQTPRLGSLYALRRWLQVHQWPINEERLVVIGKRLYVTIKA 246          
BLAST of NO13G02190 vs. NCBI_GenBank
Match: SCH86199.1 (tRNA (adenine(22)-N(1))-methyltransferase [uncultured Blautia sp.])

HSP 1 Score: 72.4 bits (176), Expect = 2.500e-9
Identity = 61/195 (31.28%), Postives = 94/195 (48.21%), Query Frame = 0
Query:   28 KLGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLT-SLSKYATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADKNAGEDDSRQRKQSAILGETL 222
            +L  RLSA  D+V  T   +VDVGCDH  L + L   ++ P   S I +D    PL+ A +++R+        Y L  ++  RL +GLE L A   G+ DTL +AG+G   +  +LT   S   +   ++LQP    P F    R  ++ Q F I EE++    G+++  +   +   E D  +   S     TL
Sbjct:    2 QLSLRLSAIADMVT-TGNRLVDVGCDHGYLPVYLIQQKKIP---SAIAMDVRKGPLSRAKEHIRQ--------YGLEEYIQARLSDGLENLKA---GEGDTLVIAGMGGPLMERILTDGQSVRDSFSEMILQPQSDIPHF----RRFIQSQGFQIVEEKMVEEEGKFYPMMRVVRTCPEGDGNENLVSEAAPYTL 177          
The following BLAST results are available for this feature:
BLAST of NO13G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21873.13.100e-7654.88sam-dependent methyltransferase [Nannochloropsis g... [more]
WP_080840513.12.300e-1031.25SAM-dependent methyltransferase [Cohnella sp. 6021... [more]
OFW76055.13.900e-1032.24hypothetical protein A2201_10330 [Alicyclobacillus... [more]
AEG59456.11.500e-931.43protein of unknown function DUF633 [Desulfotomacul... [more]
CCZ27610.11.500e-928.44putative uncharacterized protein [Firmicutes bacte... [more]
WP_041275625.11.500e-931.43SAM-dependent methyltransferase [Desulfotomaculum ... [more]
OLA30027.11.500e-928.44hypothetical protein BHW30_04980 [Firmicutes bacte... [more]
CCY34338.12.500e-931.28putative uncharacterized protein [Ruminococcus sp.... [more]
CEM11380.12.500e-928.36unnamed protein product [Vitrella brassicaformis C... [more]
SCH86199.12.500e-931.28tRNA (adenine(22)-N(1))-methyltransferase [uncultu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL135nonsL135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR071ngnoR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001677NSK001677Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02190.1NO13G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100159g12gene8551Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02190.1NO13G02190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02190 ID=NO13G02190|Name=NO13G02190|organism=Nannochloropsis oceanica|type=gene|length=849bp
ATGAGATGGACTCGCCAGCTTGCCACCGCGGCCTTTGCCGCGCACCATCT
GCAGCATCCGTCGTATTCCATCTTTCACAAGAAGCTGGGTCCTCGTCTGT
CGGCTGCCTACGACCTGGTGCCGCATACTGCTAGAGGAGTTGTCGATGTA
GGCTGTGATCATGCGTTGCTATGCATTGCCTTGGCCGCGGGTCGTCAACA
TCCCCATTTGCGCAGCGTCATTGGAGTTGATAAGGCAGCAGAACCTCTCA
ATGTGGCCAACCAAAATCTGCGAGAGCATTTGTATTTGCGCAGCGAGACA
TACCCACTCACTGCCCATCTTGACCTACGCTTAGGTGAAGGCCTTGAAGC
CTTGTGCGCCGAGGACGACGGGCAGATCGATACCTTGTGCATGGCCGGTA
TTGGCAGCGGCACAATTGTGAGTGTATTGACTTCGCTGAGCAAGTACGCG
ACGTTGAAGTACCTTGTGTTGCAGCCCTTTGACTCACGGCCGCAGTTTTT
AAAAGAAGTGCGGGACTGTGTCCGGATGCAAGACTTTCTTATTCGAGAGG
AACGGATTGACTTTGTGAATGGCCGGTGGTTTGTGACTATAGCGGCGGAT
AAAAATGCTGGAGAAGACGATTCAAGACAAAGAAAGCAATCCGCGATTTT
GGGAGAGACTTTGCGGCGGCGTGGACAAGAAGATCCTCAAACACTTCAAG
TTTACGGCGACTACCTTGCTCACCACCTTGCTTGGTTTACAGCCATCAGC
CGGGCACAAGGTGGCCATGTCGACATTACTTTGTCTGGCAATCATGTAGC
CACGTTTCTGGTGGCCATTGAGCAAGAAATGGCGGCATTGGGAGTTTAA
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protein sequence of NO13G02190.1

>NO13G02190.1-protein ID=NO13G02190.1-protein|Name=NO13G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MRWTRQLATAAFAAHHLQHPSYSIFHKKLGPRLSAAYDLVPHTARGVVDV
GCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSET
YPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKYA
TLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAAD
KNAGEDDSRQRKQSAILGETLRRRGQEDPQTLQVYGDYLAHHLAWFTAIS
RAQGGHVDITLSGNHVATFLVAIEQEMAALGV*
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Synonyms
Publications