NO13G02190.1, NO13G02190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02190.1
Unique NameNO13G02190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr13:616032..616880 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:616032..616880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02190.1 vs.
Match: EWM21873.1 (sam-dependent methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 294.7 bits (753), Expect = 3.100e-76
Identity = 163/297 (54.88%), Postives = 206/297 (69.36%), Query Frame = 0 
Query:    1 MRWTRQL-----ATAAFAAHHLQHPSYSIFHKKLGPRLSAAYDLVPHTARGVVDVGCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSETYPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKY----ATLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAADKN------AGEDDSRQRKQSAILGETLRRRGQEDPQTLQVYGDYLAHHLAWFTAISRAQGGHVDITLSGNHVATFLVAIEQEMAALGV 283
            M WT  L     A AAFA       S +I  +KLGPRLSA Y LVP  A+G+VDVGCDHALL +ALAAGR HP+LR VIG+DKA +PL+VA QNLREH Y R E YPLTA L+LR G+GLEAL  ED   +DTLCMAG+GSGTI+ VL+SL KY    A  +YLVLQPFDSRP ++ EVRDCV+ Q F I++ERID+VN RWFVT+AA  N      AG+ +  +   + +LG+ L R  +ED +T Q+Y DYL HH  W+ +I +A+  +  +    ++V+ FL AIEQE++AL V
Sbjct:    1 MGWTGLLMPLKTAIAAFAFQKQASQSSTIL-QKLGPRLSAVYRLVPSHAKGIVDVGCDHALLGLALAAGRDHPNLRKVIGIDKALDPLDVARQNLREHAYSRIEKYPLTASLELRHGDGLEALIPEDVNLVDTLCMAGLGSGTIIEVLSSL-KYVREGAKFEYLVLQPFDSRPHYVNEVRDCVKSQGFSIQQERIDYVNSRWFVTMAASVNANKADKAGQCEKVRYNSTCMLGDALMRLAREDRRTHQIYADYLCHHRDWYASICKAR--NTRMPPEHDYVSQFLRAIEQEISALRV 293
The following BLAST results are available for this feature:
BLAST of NO13G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21873.13.100e-7654.88sam-dependent methyltransferase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02190NO13G02190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02190.1NO13G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02190.1.cds1NO13G02190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02190.1 ID=NO13G02190.1|Name=NO13G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ATGAGATGGACTCGCCAGCTTGCCACCGCGGCCTTTGCCGCGCACCATCT
GCAGCATCCGTCGTATTCCATCTTTCACAAGAAGCTGGGTCCTCGTCTGT
CGGCTGCCTACGACCTGGTGCCGCATACTGCTAGAGGAGTTGTCGATGTA
GGCTGTGATCATGCGTTGCTATGCATTGCCTTGGCCGCGGGTCGTCAACA
TCCCCATTTGCGCAGCGTCATTGGAGTTGATAAGGCAGCAGAACCTCTCA
ATGTGGCCAACCAAAATCTGCGAGAGCATTTGTATTTGCGCAGCGAGACA
TACCCACTCACTGCCCATCTTGACCTACGCTTAGGTGAAGGCCTTGAAGC
CTTGTGCGCCGAGGACGACGGGCAGATCGATACCTTGTGCATGGCCGGTA
TTGGCAGCGGCACAATTGTGAGTGTATTGACTTCGCTGAGCAAGTACGCG
ACGTTGAAGTACCTTGTGTTGCAGCCCTTTGACTCACGGCCGCAGTTTTT
AAAAGAAGTGCGGGACTGTGTCCGGATGCAAGACTTTCTTATTCGAGAGG
AACGGATTGACTTTGTGAATGGCCGGTGGTTTGTGACTATAGCGGCGGAT
AAAAATGCTGGAGAAGACGATTCAAGACAAAGAAAGCAATCCGCGATTTT
GGGAGAGACTTTGCGGCGGCGTGGACAAGAAGATCCTCAAACACTTCAAG
TTTACGGCGACTACCTTGCTCACCACCTTGCTTGGTTTACAGCCATCAGC
CGGGCACAAGGTGGCCATGTCGACATTACTTTGTCTGGCAATCATGTAGC
CACGTTTCTGGTGGCCATTGAGCAAGAAATGGCGGCATTGGGAGTTTAA
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protein sequence of NO13G02190.1

>NO13G02190.1-protein ID=NO13G02190.1-protein|Name=NO13G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MRWTRQLATAAFAAHHLQHPSYSIFHKKLGPRLSAAYDLVPHTARGVVDV
GCDHALLCIALAAGRQHPHLRSVIGVDKAAEPLNVANQNLREHLYLRSET
YPLTAHLDLRLGEGLEALCAEDDGQIDTLCMAGIGSGTIVSVLTSLSKYA
TLKYLVLQPFDSRPQFLKEVRDCVRMQDFLIREERIDFVNGRWFVTIAAD
KNAGEDDSRQRKQSAILGETLRRRGQEDPQTLQVYGDYLAHHLAWFTAIS
RAQGGHVDITLSGNHVATFLVAIEQEMAALGV*
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mRNA from alignment at chr13:616032..616880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02190.1 ID=NO13G02190.1|Name=NO13G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp|location=Sequence derived from alignment at chr13:616032..616880- (Nannochloropsis oceanica)
ATGAGATGGACTCGCCAGCTTGCCACCGCGGCCTTTGCCGCGCACCATCT
GCAGCATCCGTCGTATTCCATCTTTCACAAGAAGCTGGGTCCTCGTCTGT
CGGCTGCCTACGACCTGGTGCCGCATACTGCTAGAGGAGTTGTCGATGTA
GGCTGTGATCATGCGTTGCTATGCATTGCCTTGGCCGCGGGTCGTCAACA
TCCCCATTTGCGCAGCGTCATTGGAGTTGATAAGGCAGCAGAACCTCTCA
ATGTGGCCAACCAAAATCTGCGAGAGCATTTGTATTTGCGCAGCGAGACA
TACCCACTCACTGCCCATCTTGACCTACGCTTAGGTGAAGGCCTTGAAGC
CTTGTGCGCCGAGGACGACGGGCAGATCGATACCTTGTGCATGGCCGGTA
TTGGCAGCGGCACAATTGTGAGTGTATTGACTTCGCTGAGCAAGTACGCG
ACGTTGAAGTACCTTGTGTTGCAGCCCTTTGACTCACGGCCGCAGTTTTT
AAAAGAAGTGCGGGACTGTGTCCGGATGCAAGACTTTCTTATTCGAGAGG
AACGGATTGACTTTGTGAATGGCCGGTGGTTTGTGACTATAGCGGCGGAT
AAAAATGCTGGAGAAGACGATTCAAGACAAAGAAAGCAATCCGCGATTTT
GGGAGAGACTTTGCGGCGGCGTGGACAAGAAGATCCTCAAACACTTCAAG
TTTACGGCGACTACCTTGCTCACCACCTTGCTTGGTTTACAGCCATCAGC
CGGGCACAAGGTGGCCATGTCGACATTACTTTGTCTGGCAATCATGTAGC
CACGTTTCTGGTGGCCATTGAGCAAGAAATGGCGGCATTGGGAGTTTAA
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Coding sequence (CDS) from alignment at chr13:616032..616880-

>NO13G02190.1 ID=NO13G02190.1|Name=NO13G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr13:616032..616880- (Nannochloropsis oceanica)
ATGAGATGGACTCGCCAGCTTGCCACCGCGGCCTTTGCCGCGCACCATCT
GCAGCATCCGTCGTATTCCATCTTTCACAAGAAGCTGGGTCCTCGTCTGT
CGGCTGCCTACGACCTGGTGCCGCATACTGCTAGAGGAGTTGTCGATGTA
GGCTGTGATCATGCGTTGCTATGCATTGCCTTGGCCGCGGGTCGTCAACA
TCCCCATTTGCGCAGCGTCATTGGAGTTGATAAGGCAGCAGAACCTCTCA
ATGTGGCCAACCAAAATCTGCGAGAGCATTTGTATTTGCGCAGCGAGACA
TACCCACTCACTGCCCATCTTGACCTACGCTTAGGTGAAGGCCTTGAAGC
CTTGTGCGCCGAGGACGACGGGCAGATCGATACCTTGTGCATGGCCGGTA
TTGGCAGCGGCACAATTGTGAGTGTATTGACTTCGCTGAGCAAGTACGCG
ACGTTGAAGTACCTTGTGTTGCAGCCCTTTGACTCACGGCCGCAGTTTTT
AAAAGAAGTGCGGGACTGTGTCCGGATGCAAGACTTTCTTATTCGAGAGG
AACGGATTGACTTTGTGAATGGCCGGTGGTTTGTGACTATAGCGGCGGAT
AAAAATGCTGGAGAAGACGATTCAAGACAAAGAAAGCAATCCGCGATTTT
GGGAGAGACTTTGCGGCGGCGTGGACAAGAAGATCCTCAAACACTTCAAG
TTTACGGCGACTACCTTGCTCACCACCTTGCTTGGTTTACAGCCATCAGC
CGGGCACAAGGTGGCCATGTCGACATTACTTTGTCTGGCAATCATGTAGC
CACGTTTCTGGTGGCCATTGAGCAAGAAATGGCGGCATTGGGAGTTTAA
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Synonyms
Publications