NO13G02140, NO13G02140 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO13G02140 vs. NCBI_GenBank
Match: EWM21882.1 (epidermal retinol dehydrogenase 2 [Nannochloropsis gaditana]) HSP 1 Score: 413.3 bits (1061), Expect = 5.100e-112 Identity = 200/236 (84.75%), Postives = 222/236 (94.07%), Query Frame = 0 Query: 1 MQAVAKEIEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGVPALVRDFIYDFMGVGENMTDFKQTRTKTLKEQ 237 M+AVA+E+E GA+ TYKVDV+KRERVYEVAKQMR ++GK V+VLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWT+KAFLPAMV+ NHGHIIT+ASTAGLVGVDGLADYCTSK+AAI+FHEGIRTE+RRLK PG+RMTLVNPYFIDTGMFTGAKTKAPILLPILQP+YV SI++AAEKNRNLL +PRY YIL +TNGVPALVRDFIYDFMG+GENM DFKQTRTK+LKEQ Sbjct: 153 MKAVAREVEGIGARVFTYKVDVSKRERVYEVAKQMRKDVGKSVSVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTIKAFLPAMVEANHGHIITVASTAGLVGVDGLADYCTSKAAAISFHEGIRTEVRRLKRPGIRMTLVNPYFIDTGMFTGAKTKAPILLPILQPEYVATSIIDAAEKNRNLLNLPRYTYILMVTNGVPALVRDFIYDFMGIGENMADFKQTRTKSLKEQ 388
BLAST of NO13G02140 vs. NCBI_GenBank
Match: XP_005856330.1 (epidermal retinol dehydrogenase 2-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20033.1 epidermal retinol dehydrogenase 2-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 411.8 bits (1057), Expect = 1.500e-111 Identity = 199/236 (84.32%), Postives = 222/236 (94.07%), Query Frame = 0 Query: 1 MQAVAKEIEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGVPALVRDFIYDFMGVGENMTDFKQTRTKTLKEQ 237 M+AVA+E+E GA+ TYKVDV++RERVYEVAKQMR ++GK V+VLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWT+KAFLPAMV+ NHGHIIT+ASTAGLVGVDGLADYCTSK+AAI+FHEGIRTE+RRLK PG+RMTLVNPYFIDTGMFTGAKTKAPILLPILQP+YV SI++AAEKNRNLL +PRY YIL +TNGVPALVRDFIYDFMG+GENM DFKQTRTK+LKEQ Sbjct: 96 MKAVAREVEGIGARVFTYKVDVSERERVYEVAKQMRKDVGKSVSVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTIKAFLPAMVEANHGHIITVASTAGLVGVDGLADYCTSKAAAISFHEGIRTEVRRLKRPGIRMTLVNPYFIDTGMFTGAKTKAPILLPILQPEYVATSIIDAAEKNRNLLNLPRYTYILMVTNGVPALVRDFIYDFMGIGENMADFKQTRTKSLKEQ 331
BLAST of NO13G02140 vs. NCBI_GenBank
Match: XP_004988364.1 (epidermal retinol dehydrogenase 2 [Salpingoeca rosetta] >EGD80039.1 epidermal retinol dehydrogenase 2 [Salpingoeca rosetta]) HSP 1 Score: 235.7 bits (600), Expect = 1.400e-58 Identity = 121/226 (53.54%), Postives = 154/226 (68.14%), Query Frame = 0 Query: 3 AVAKEIEAQGAQ--ALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGV-PALVRDFIYDFMGVGENMTDF 226 AV EI + Q A Y +D+T RE+VY +AKQ++ E+G VT+LVNNAGIV GKPFLE DD+ +KTMEVN IAHFWT KAFLP M++ NHGHI+T+AS+AG VGV LADYC SK A+ F E IR E+R++ GV T V P+FIDTGMF GAKTK P LLPIL+P+ VV+ + A N+ + +PR+ Y G+ P + D I D G ++M DF Sbjct: 77 AVVAEIREKHGQDRAHAYAIDITDREKVYALAKQVKREVGA-VTILVNNAGIVTGKPFLEADDSKMVKTMEVNTIAHFWTTKAFLPDMLEKNHGHIVTVASSAGKVGVASLADYCASKFGAVGFDESIRFELRKMGKTGVHTTCVCPFFIDTGMFEGAKTKVPWLLPILKPELVVDRTIRAIRMNQATVAIPRFLYFGQFLQGILPPSISDAIVDLFGANDSMDDF 301
BLAST of NO13G02140 vs. NCBI_GenBank
Match: XP_009052697.1 (hypothetical protein LOTGIDRAFT_180616 [Lottia gigantea] >ESO96613.1 hypothetical protein LOTGIDRAFT_180616 [Lottia gigantea]) HSP 1 Score: 229.6 bits (584), Expect = 1.000e-56 Identity = 116/226 (51.33%), Postives = 155/226 (68.58%), Query Frame = 0 Query: 2 QAVAKEIEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGV-PALVRDFIYDFMGVGENMTDFK 227 +A AKE+ +G TY VD++ RE +Y+ A+++R E+G+ V VLVNNAGIV G+ FL+ D+ KTMEVN +AHFWTVKAFLP M+Q NHGHI+T+AS+AGLVGV GLADYC SK AA+ F E IR E+ +L GV T+V P+ I+TGMF G K P+LLPIL PDY V+SI+ A N+ ++V+P+ Y++ G+ P + +F V M DFK Sbjct: 76 EATAKEMRKRGVTVRTYTVDLSNREDIYKAAEKVRTEVGQ-VDVLVNNAGIVTGRKFLDCPDSLIQKTMEVNSVAHFWTVKAFLPTMIQRNHGHIVTLASSAGLVGVSGLADYCASKYAAVGFDESIRFELEKLGKDGVHTTVVCPFLINTGMFDGCIAKFPLLLPILDPDYAVDSIMTAILINQEIIVLPKSLYLVFALKGILPTKCSHILSNFFEVSNCMDDFK 300
BLAST of NO13G02140 vs. NCBI_GenBank
Match: XP_005108793.2 (PREDICTED: epidermal retinol dehydrogenase 2-like [Aplysia californica]) HSP 1 Score: 225.7 bits (574), Expect = 1.500e-55 Identity = 113/230 (49.13%), Postives = 161/230 (70.00%), Query Frame = 0 Query: 5 AKEIEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGV-PALVRDFIYDFMGVGENMTDF-KQTRTKT 233 A++IEA+G++ Y VD++ +E +YE A +++A++G +V VLVNNAGIV G+ FL+ D KTMEVN AHFWT K+FLP M++ NHGHI+TIAS+AGL GV LADYC SK A+ F E IR+E+ + + GV T+V P+FI TGMF GAK++ P LLP+L+P+Y + I++A N+ +L PR Y+L GV P+ V D + +F+G+ +M DF +T+ KT Sbjct: 80 ARQIEAKGSKVKAYTVDLSNKESIYETAAKVKADVG-NVDVLVNNAGIVTGRKFLDCPDGLVEKTMEVNTNAHFWTTKSFLPEMMERNHGHIVTIASSAGLFGVATLADYCASKFGAVGFDESIRSEMLKYRKTGVHTTVVCPFFIKTGMFEGAKSRFPWLLPLLEPEYAADKIMDAVRTNQPMLCAPRVLYLLYFLRGVFPSTVADVLAEFIGISASMDDFVGRTKPKT 308
BLAST of NO13G02140 vs. NCBI_GenBank
Match: XP_017328263.1 (PREDICTED: epidermal retinol dehydrogenase 2 isoform X1 [Ictalurus punctatus]) HSP 1 Score: 225.7 bits (574), Expect = 1.500e-55 Identity = 110/219 (50.23%), Postives = 155/219 (70.78%), Query Frame = 0 Query: 9 EAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYI-LTMTNGVPALVRDFIYDFMGVGENMTDFK 227 E GA+A TY D + RE VY+VA +++ E+G D+T+LVNNAGIV GK FL+ D++ KTMEVN +AHFWT KAFLPAM+ NHGH+++IAS+AGL+GV GLADYC SK AA+ F E + E+ + C GV+ T+V P+FI+TGMF GA TK P L+PIL+PDYV I++A +++ L +PR Y+ + + N +P + + +++G + M FK Sbjct: 82 ETHGARAHTYTCDCSSREEVYKVADRVKREVG-DITILVNNAGIVTGKKFLQSPDSHIEKTMEVNSMAHFWTCKAFLPAMIAANHGHLVSIASSAGLIGVSGLADYCASKFAAVGFAESMALEMLAIGCDGVKTTIVCPFFINTGMFDGANTKWPRLMPILEPDYVCRKIVDAVRRDQVYLYLPRSIYLSIALKNILPVKLGVLLGEYLGAFDFMAKFK 299
BLAST of NO13G02140 vs. NCBI_GenBank
Match: XP_004345146.1 (epidermal retinal dehydrogenase 2 [Capsaspora owczarzaki ATCC 30864] >KJE96023.1 epidermal retinal dehydrogenase 2 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 221.9 bits (564), Expect = 2.200e-54 Identity = 112/230 (48.70%), Postives = 154/230 (66.96%), Query Frame = 0 Query: 1 MQAVAKEIEA----QGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGV-PALVRDFIYDFMGVGENMTDF 226 +QAVA EI A A A YK D++ R+ VY +A ++++E+G+ V++LVNNAGIV G+ L+ D KT VN AHFWTVKAFLPAM++ NHGH++TIAS+AGL+GV GLADYC SK A+ E +R E+ +L GV+ T+V P+FIDTGMF G T+ P++LPIL+PDY V IL+A N+++L MPR+ Y++ + P D + GV +M DF Sbjct: 75 VQAVAAEIRALRPDDKAAAFAYKCDLSSRDDVYAMAARVKSEVGQ-VSILVNNAGIVTGRKLLDCPDPLIEKTFSVNTTAHFWTVKAFLPAMIESNHGHVVTIASSAGLIGVAGLADYCASKHGAVGLDESLRYEMHKLGKTGVKTTVVCPFFIDTGMFEGVTTRFPLILPILKPDYAVAKILDAILTNQSILCMPRFVYLMPFAKSILPTQAMDAVVRLFGVSNSMDDF 303
BLAST of NO13G02140 vs. NCBI_GenBank
Match: XP_012676787.1 (PREDICTED: epidermal retinol dehydrogenase 2-like [Clupea harengus]) HSP 1 Score: 220.7 bits (561), Expect = 4.800e-54 Identity = 113/228 (49.56%), Postives = 157/228 (68.86%), Query Frame = 0 Query: 8 IEAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAY-ILTMTNGVPALVRDFIYDFMGVGENMTDFKQTRTKTLK 235 +E +A TY D + R VY VA Q++ E+G DVT+L+NNAGIV GK FLE DA KT++VN +AHFWT KAFLPAM+ NHGH+++IAS+AGL+GV+ LADYC SK AA+ F E + E+ GV+ T+V P+FI+TGMF GA TK PI++PILQPDYV I++A ++++ L MPR Y ++ M N +P + + +MG + M++FK RTK ++ Sbjct: 81 LEQHSNRANTYVCDCSDRAEVYRVADQVKREVG-DVTILINNAGIVTGKKFLESPDALIEKTVQVNSMAHFWTYKAFLPAMIAGNHGHLVSIASSAGLIGVNALADYCASKFAAVGFAESMALELLATGVDGVKTTIVCPFFINTGMFDGANTKWPIMMPILQPDYVCRKIVDAIQRDQVYLYMPRILYTVIAMKNILPTKLGVLLGQYMGAFDFMSEFK-GRTKKIE 306
BLAST of NO13G02140 vs. NCBI_GenBank
Match: NP_999936.1 (epidermal retinol dehydrogenase 2 [Danio rerio] >AAH54138.1 Short chain dehydrogenase/reductase family 16C, member 5 [Danio rerio]) HSP 1 Score: 220.3 bits (560), Expect = 6.300e-54 Identity = 111/219 (50.68%), Postives = 149/219 (68.04%), Query Frame = 0 Query: 9 EAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILT-MTNGVPALVRDFIYDFMGVGENMTDFK 227 E GA+A TY D + RE VY VA Q++ E+G DVT+L+NNAGIV GK F++ D+ K+MEVN +AHFWT KAFLPAM+ NHGH+++IAS+AGL+GV+GLADYC SK AA+ F E + E+ C GV+ T+V P+FI+TGMF GA TK P L+PIL PDY I++A + + L MPR YI+ + N +P V + +++G M FK Sbjct: 82 EKYGARAHTYTCDCSDREEVYRVANQVKREVG-DVTILINNAGIVTGKKFMDSPDSLIEKSMEVNSLAHFWTYKAFLPAMIAGNHGHLVSIASSAGLIGVNGLADYCASKFAAVGFAESMGLELLATGCDGVKTTIVCPFFINTGMFDGANTKWPRLMPILDPDYACRKIVDAIRREQVYLYMPRSIYIIIGLRNLLPTKVGVLLGEYLGAFNFMAKFK 299
BLAST of NO13G02140 vs. NCBI_GenBank
Match: XP_009877684.1 (PREDICTED: epidermal retinol dehydrogenase 2 [Apaloderma vittatum]) HSP 1 Score: 220.3 bits (560), Expect = 6.300e-54 Identity = 110/219 (50.23%), Postives = 148/219 (67.58%), Query Frame = 0 Query: 9 EAQGAQALTYKVDVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTMEVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSAAIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQPDYVVNSILNAAEKNRNLLVMPRYAYILTMTNG-VPALVRDFIYDFMGVGENMTDFK 227 E A+ +Y D +KR+ +Y VA Q++ E+G DVT+LVNNAGIV GK F+E D+ K MEVN +AHFWT KAFLPAM+ NHGH+++IASTAGL GV L+DYC SK AA+ F E + E+R L GV+ T+V PY I+TGMF G +TK P LLPIL+P+YV I+ A +++ +L++PR Y L G +P V D++G+ + MT FK Sbjct: 82 ENGAARVQSYVCDCSKRQDIYRVADQVKKEVG-DVTILVNNAGIVTGKSFIESPDSLVEKNMEVNTMAHFWTYKAFLPAMMASNHGHLVSIASTAGLTGVSRLSDYCASKFAAVGFAESVDFEMRSLGMTGVKTTIVCPYLINTGMFDGCRTKWPTLLPILEPEYVAEKIITAIRQDQEILLIPRSCYFLLCLKGFLPVKVAALFADYLGILDFMTSFK 299 The following BLAST results are available for this feature:
BLAST of NO13G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO13G02140 ID=NO13G02140|Name=NO13G02140|organism=Nannochloropsis oceanica|type=gene|length=1679bpback to top protein sequence of NO13G02140.2 >NO13G02140.2-protein ID=NO13G02140.2-protein|Name=NO13G02140.2|organism=Nannochloropsis oceanica|type=polypeptide|length=237bpback to top protein sequence of NO13G02140.1 >NO13G02140.1-protein ID=NO13G02140.1-protein|Name=NO13G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bpback to top Synonyms
Publications
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