jgi.p|Nanoce1779_2|640637, gene_6797 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640637
Unique Namegene_6797
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_17:118774..120111 +

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Properties
Property NameValue
TranscriptId640723
ProteinId640637
Product nameshort chain dehydrogenase/reductase family 16C, member 5b
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:118774..120111 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004745retinol dehydrogenase activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL026ncniL026Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02140NO13G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640637mRNA_6797-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640637mRNA_6797Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|640637

>mRNA_6797-protein ID=mRNA_6797-protein|Name=jgi.p|Nanoce1779_2|640637|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAVDVWAHIYGFVECLGAICWAFVLLNVEYFDLLFPKRKSFRGETVLITG
GASGIGRLMALKFAAYENTTVIIWDLNETSMQAVAKEIEAQGAQALTYKV
DVTKRERVYEVAKQMRAEIGKDVTVLVNNAGIVAGKPFLEGDDAYSLKTM
EVNVIAHFWTVKAFLPAMVQMNHGHIITIASTAGLVGVDGLADYCTSKSA
AIAFHEGIRTEIRRLKCPGVRMTLVNPYFIDTGMFTGAKTKAPILLPILQ
PDYVVNSILNAAEKNRNLLVMPRYAYILTMTNGVPALVRDFIYDFMGVGE
NMTDFKQTRTKTLKEQ*
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Synonyms
Publications