NO13G02010, NO13G02010 (gene) Nannochloropsis oceanica

Overview
NameNO13G02010
Unique NameNO13G02010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1962
Alignment locationchr13:576745..578706 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:576745..578706 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO13G02010 vs. NCBI_GenBank
Match: EWM21856.1 (hypothetical protein Naga_100169g9 [Nannochloropsis gaditana])

HSP 1 Score: 224.6 bits (571), Expect = 9.200e-55
Identity = 155/369 (42.01%), Postives = 195/369 (52.85%), Query Frame = 0 
Query:   59 SPTSDGLEENGDSLVSWTLDTVPDVTLLEAARREALEKDTEWYQSIIGGS---------ITPAPAAGMVAGPPSIEDGTADNSLPLRPLVELGYSRQEAVQLPEDIAGIIVEDQITRPVGALPREWLAVDVD----ADVAVTVGEDMDSKLAQKGS---------------SSAKGRE-----KKILQQRFSRYAPPPSRPSTPSSKRAQRKRDATQYKKVYEQEALVDDDLGWGDEVXXXXXXXXXXXXXXXXXXXRKGLRANVYRQEGVSDYEDFGPTFPEQEPGLLPLLVDKVAERVRDSALLRPLLTERTFTSLLSQEADLRLLVTGPWAAELMQNEFRWRLGLFRDYLKVEKKKPEAGLGDGRR 395
            SPT +  E   D L  W L+ VPD  LL AAR EAL+KD +WYQ++IGG+          T  PA   +    S  + T +    L+PLV+LGYS++EA +LPEDIA IIVE  I RP G LP+EWL  D D     D A     D  ++ A                   + A G+      K++   R +     P+  S  +    Q +R   QYKK   + A   + +   + V                     G R+    ++   ++EDF PTF EQEPGLLPLL+D VAERVR S LLRPLL E  F  LLSQEADLRL+VTGPWAAEL+Q+E RWRLGLFRDYLKVE+K    G G G R
Sbjct:   49 SPTEE--EARSDPLECWNLNVVPDKKLLAAARAEALKKDADWYQAVIGGNEDREKDHSLRTVRPATDEIVVEESTGNDTLEVPQALKPLVDLGYSQEEATELPEDIASIIVESGIRRPEGKLPKEWLTSDTDIEPHKDAADREEHDTWAEEAXXXXXXXXXXXXXXXXXXWAGAPGKRPGKATKEVRSVRSAESRNVPTSASFIAGGGVQGRRREGQYKKRTRESAGGSESVAGRENVGHEYRVGF-------------GRRSQREERDDDREFEDFDPTFAEQEPGLLPLLLDLVAERVRGSRLLRPLLRESKFKYLLSQEADLRLMVTGPWAAELLQDEIRWRLGLFRDYLKVEEK---GGRGAGSR 399
The following BLAST results are available for this feature:
BLAST of NO13G02010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21856.19.200e-5542.01hypothetical protein Naga_100169g9 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001694NSK001694Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02010.1NO13G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100169g9gene8569Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02010.1NO13G02010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02010 ID=NO13G02010|Name=NO13G02010|organism=Nannochloropsis oceanica|type=gene|length=1962bp
ATGATGCGCCGGCCCCAGGCAATATCAAGCCTGCATCTGCTGCTGGCCAC
GCTGCTGCTTCTGGACCTTGCATCCGCCTTTGTGTTGCCGCCATCATTAT
TGTCATCATCGTCACCATCGTCATCATCGTCATCACCATCTTCATCGAGC
ACCAGCAGCATTGGGCGGGCCATCAGCCCAACTTCCGATGGCCTGGAGGA
GAATGGCGACTCGCTAGTAAGCTGGACCCTAGACACTGTGCCGGACGTGA
CCTTGCTTGAGGCGGCCCGGAGGGAGGCTCTGGAAAAGGACACGGAGTGG
TACCAATCCATTATTGGCGGGAGCATTACGCCTGCACCTGCGGCAGGAAT
GGTAGCAGGTCCACCAAGCATAGAGGACGGCACTGCCGACAATTCTCTCC
CTCTCAGACCCTTGGTAGAACTAGGGTATAGCCGGCAAGAAGCTGTGCAG
CTACCTGAGGACATTGCGGGCATTATTGTCGAGGATCAGATTACTCGGCC
GGTGGGGGCCTTGCCTCGGGAGTGGTTGGCTGTCGATGTGGATGCTGATG
TAGCAGTGACAGTCGGAGAAGATATGGACTCCAAGTTGGCGCAAAAGGGC
AGTAGCAGTGCAAAAGGAAGAGAAAAGAAGATTCTACAGCAACGCTTCTC
ACGATATGCCCCACCACCATCTCGCCCATCCACACCTAGCAGTAAACGCG
CCCAGCGAAAACGCGATGCGACTCAGTACAAGAAAGTGTACGAGCAAGAG
GCGCTGGTGGACGATGATTTAGGGTGGGGGGATGAGGTGGAGGAGGAGGA
CAATGAGGACGAGGAGGACGAGGAGGACGAGATGGAGCGGGAGTACAGGA
AGGGCCTCCGGGCGAATGTTTATCGACAAGAAGGCGTGAGCGATTACGAG
GACTTCGGACCTACTTTTCCAGAACAAGAGCCCGGTTTACTTCCTTTGTT
GGTAGATAAAGTAGCGGAGCGTGTGCGAGATAGTGCTTTGCTTCGGCCCT
TGCTGACAGAAAGGACGTTTACATCTCTCTTGAGCCAAGAAGCGGACTTG
CGGCTTTTGGTCACGGGGCCATGGGCGGCTGAGCTGATGCAGAATGAGTT
TAGGTGGCGCTTGGGACTGTTTCGAGATTATTTAAAGGTGGAAAAGAAGA
AGCCTGAAGCAGGGTTGGGAGACGGGAGGAGGACGACGAAGAAAGGGGGG
TGGAAAGGTTGGGGATATGAGGATGAGGTGGAAAAGGAGAATGGTGAGGT
AGTCAGTAGTTTTTTGGAGGGGGAGGAGGAGGAGGAGGAGGAGGGAGATG
ATGAATTTTTTTTCGATAAGGCCGCCAAGGCTTGGAGGCGGCGGCGACGC
AGTGGTCCCACTAGACAAGGAGGAGAAGGAAGAAGAATGGGAGGGGATAC
CGACCCCTATTTCTACACTTCGCGCAGCAGCAGCAGCAGTAGGAGTAGTA
GCAGCAACAGCCGCAGTAGTGGAAGTCGGCCGTCAATAGTGGAATGGGTG
GGAATGGAAGAGGAAGAGGAAGAGGAGGGCGATGACGTCATGGATGCAAG
CTGGAGTGCCTTTGACGAGGATGAGGACGAGCAGAGTTACACTCGCCGTG
CAACATCTCCCTCTTCCTCTCGCCGATCCTCTTCTCCCTCTTCTTCTCCT
TCTGTCAACCGCCGTCGGCGCCGGGAACGAAAGCAAGAGGTCCGAGCAGG
GGTTGGTGTGGATAGACGCTTTATGGGGCAGCAAGAAGAGGAGGCAACCA
ACGACCGCTCTGGTGCTTGGGTATGGCAAAACCCCTCACGCACCACGGGA
GGAGGACGAGAAGGAGGAGGTGGTGGAGGAGGAGGAGGCGAGAAGGGAAG
GAGAGAGAGGGGACAAGCGGATCATGCAAGAATGAGGGATGGAGGGAGGG
TGGAGGAAGGGAGGGTGTTCCGATGGCCCTGGGAGATGGCGGGGGATGAA
TTTGAGGATTAA
back to top

protein sequence of NO13G02010.1

>NO13G02010.1-protein ID=NO13G02010.1-protein|Name=NO13G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=654bp
MMRRPQAISSLHLLLATLLLLDLASAFVLPPSLLSSSSPSSSSSSPSSSS
TSSIGRAISPTSDGLEENGDSLVSWTLDTVPDVTLLEAARREALEKDTEW
YQSIIGGSITPAPAAGMVAGPPSIEDGTADNSLPLRPLVELGYSRQEAVQ
LPEDIAGIIVEDQITRPVGALPREWLAVDVDADVAVTVGEDMDSKLAQKG
SSSAKGREKKILQQRFSRYAPPPSRPSTPSSKRAQRKRDATQYKKVYEQE
ALVDDDLGWGDEVEEEDNEDEEDEEDEMEREYRKGLRANVYRQEGVSDYE
DFGPTFPEQEPGLLPLLVDKVAERVRDSALLRPLLTERTFTSLLSQEADL
RLLVTGPWAAELMQNEFRWRLGLFRDYLKVEKKKPEAGLGDGRRTTKKGG
WKGWGYEDEVEKENGEVVSSFLEGEEEEEEEGDDEFFFDKAAKAWRRRRR
SGPTRQGGEGRRMGGDTDPYFYTSRSSSSSRSSSSNSRSSGSRPSIVEWV
GMEEEEEEEGDDVMDASWSAFDEDEDEQSYTRRATSPSSSRRSSSPSSSP
SVNRRRRRERKQEVRAGVGVDRRFMGQQEEEATNDRSGAWVWQNPSRTTG
GGREGGGGGGGGGEKGRRERGQADHARMRDGGRVEEGRVFRWPWEMAGDE
FED*
back to top
Synonyms
Publications