NO13G02010.1, NO13G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02010.1
Unique NameNO13G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1962
Alignment locationchr13:576745..578706 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:576745..578706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02010.1 vs.
Match: EWM21856.1 (hypothetical protein Naga_100169g9 [Nannochloropsis gaditana])

HSP 1 Score: 235.7 bits (600), Expect = 4.000e-58
Identity = 188/471 (39.92%), Postives = 250/471 (53.08%), Query Frame = 0 
Query:   23 LASAFVLPPSLLSSSSPSSSSSSPSSSSTSSIGRAISPTSDGLEENGDSLVSWTLDTVPDVTLLEAARREALEKDTEWYQSIIGGSI---------TPAPAAGMVAGPPSIEDGTADNSLPLRPLVELGYSRQEAVQLPEDIAGIIVEDQITRPVGALPREWLAVDVDADVAVTVG----------EDMDSKLAQK---------GSSSAKGRE-----KKILQQRFSRYAPPPSRPSTPSSKRAQRKRDATQYKKVYEQEALVDDDLGWGDEVEEEDNEDEEDEEDEMEREYRKGLRANVYRQEGVSD--YEDFGPTFPEQEPGLLPLLVDKVAERVRDSALLRPLLTERTFTSLLSQEADLRLLVTGPWAAELMQNEFRWRLGLFRDYLKVEKKKPEAGLGDGRRTTKKGGWKGWGYEDEVEKENGEVVSSFLEGEEEEEEEGDDEFFFDKAAKAWRRRRRSGPTRQGG 459
            + SAF L  + L  +  S +SS+P  ++ S       PT +  E   D L  W L+ VPD  LL AAR EAL+KD +WYQ++IGG+          T  PA   +    S  + T +    L+PLV+LGYS++EA +LPEDIA IIVE  I RP G LP+EWL  D D +                E ++ +  Q+         G + A G+      K++   R +     P+  S  +    Q +R   QYKK   + A      G  + V   +N         +  EYR G      R+E   D  +EDF PTF EQEPGLLPLL+D VAERVR S LLRPLL E  F  LLSQEADLRL+VTGPWAAEL+Q+E RWRLGLFRDYLKVE+K        GR    +GG  G G+E+E E+         ++ E+   E+ D+++ +D+A + WRR  R G +R GG
Sbjct:   20 VCSAFGLQTTFLVPAPASRASSTPQHATRS-------PTEE--EARSDPLECWNLNVVPDKKLLAAARAEALKKDADWYQAVIGGNEDREKDHSLRTVRPATDEIVVEESTGNDTLEVPQALKPLVDLGYSQEEATELPEDIASIIVESGIRRPEGKLPKEWLTSDTDIEPHKDAADREEHDTWAEEALEEEETQRRERDDEESSGWAGAPGKRPGKATKEVRSVRSAESRNVPTSASFIAGGGVQGRRREGQYKKRTRESA------GGSESVAGREN---------VGHEYRVGFGRRSQREERDDDREFEDFDPTFAEQEPGLLPLLLDLVAERVRGSRLLRPLLRESKFKYLLSQEADLRLMVTGPWAAELLQDEIRWRLGLFRDYLKVEEK-------GGRGAGSRGGRTGRGWEEEEEE---------VKEEDWLSEDEDEDYAYDRARQTWRRTGR-GASRGGG 449
The following BLAST results are available for this feature:
BLAST of NO13G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21856.14.000e-5839.92hypothetical protein Naga_100169g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02010NO13G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02010.1NO13G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02010.1.cds1NO13G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02010.1 ID=NO13G02010.1|Name=NO13G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp
ATGATGCGCCGGCCCCAGGCAATATCAAGCCTGCATCTGCTGCTGGCCAC
GCTGCTGCTTCTGGACCTTGCATCCGCCTTTGTGTTGCCGCCATCATTAT
TGTCATCATCGTCACCATCGTCATCATCGTCATCACCATCTTCATCGAGC
ACCAGCAGCATTGGGCGGGCCATCAGCCCAACTTCCGATGGCCTGGAGGA
GAATGGCGACTCGCTAGTAAGCTGGACCCTAGACACTGTGCCGGACGTGA
CCTTGCTTGAGGCGGCCCGGAGGGAGGCTCTGGAAAAGGACACGGAGTGG
TACCAATCCATTATTGGCGGGAGCATTACGCCTGCACCTGCGGCAGGAAT
GGTAGCAGGTCCACCAAGCATAGAGGACGGCACTGCCGACAATTCTCTCC
CTCTCAGACCCTTGGTAGAACTAGGGTATAGCCGGCAAGAAGCTGTGCAG
CTACCTGAGGACATTGCGGGCATTATTGTCGAGGATCAGATTACTCGGCC
GGTGGGGGCCTTGCCTCGGGAGTGGTTGGCTGTCGATGTGGATGCTGATG
TAGCAGTGACAGTCGGAGAAGATATGGACTCCAAGTTGGCGCAAAAGGGC
AGTAGCAGTGCAAAAGGAAGAGAAAAGAAGATTCTACAGCAACGCTTCTC
ACGATATGCCCCACCACCATCTCGCCCATCCACACCTAGCAGTAAACGCG
CCCAGCGAAAACGCGATGCGACTCAGTACAAGAAAGTGTACGAGCAAGAG
GCGCTGGTGGACGATGATTTAGGGTGGGGGGATGAGGTGGAGGAGGAGGA
CAATGAGGACGAGGAGGACGAGGAGGACGAGATGGAGCGGGAGTACAGGA
AGGGCCTCCGGGCGAATGTTTATCGACAAGAAGGCGTGAGCGATTACGAG
GACTTCGGACCTACTTTTCCAGAACAAGAGCCCGGTTTACTTCCTTTGTT
GGTAGATAAAGTAGCGGAGCGTGTGCGAGATAGTGCTTTGCTTCGGCCCT
TGCTGACAGAAAGGACGTTTACATCTCTCTTGAGCCAAGAAGCGGACTTG
CGGCTTTTGGTCACGGGGCCATGGGCGGCTGAGCTGATGCAGAATGAGTT
TAGGTGGCGCTTGGGACTGTTTCGAGATTATTTAAAGGTGGAAAAGAAGA
AGCCTGAAGCAGGGTTGGGAGACGGGAGGAGGACGACGAAGAAAGGGGGG
TGGAAAGGTTGGGGATATGAGGATGAGGTGGAAAAGGAGAATGGTGAGGT
AGTCAGTAGTTTTTTGGAGGGGGAGGAGGAGGAGGAGGAGGAGGGAGATG
ATGAATTTTTTTTCGATAAGGCCGCCAAGGCTTGGAGGCGGCGGCGACGC
AGTGGTCCCACTAGACAAGGAGGAGAAGGAAGAAGAATGGGAGGGGATAC
CGACCCCTATTTCTACACTTCGCGCAGCAGCAGCAGCAGTAGGAGTAGTA
GCAGCAACAGCCGCAGTAGTGGAAGTCGGCCGTCAATAGTGGAATGGGTG
GGAATGGAAGAGGAAGAGGAAGAGGAGGGCGATGACGTCATGGATGCAAG
CTGGAGTGCCTTTGACGAGGATGAGGACGAGCAGAGTTACACTCGCCGTG
CAACATCTCCCTCTTCCTCTCGCCGATCCTCTTCTCCCTCTTCTTCTCCT
TCTGTCAACCGCCGTCGGCGCCGGGAACGAAAGCAAGAGGTCCGAGCAGG
GGTTGGTGTGGATAGACGCTTTATGGGGCAGCAAGAAGAGGAGGCAACCA
ACGACCGCTCTGGTGCTTGGGTATGGCAAAACCCCTCACGCACCACGGGA
GGAGGACGAGAAGGAGGAGGTGGTGGAGGAGGAGGAGGCGAGAAGGGAAG
GAGAGAGAGGGGACAAGCGGATCATGCAAGAATGAGGGATGGAGGGAGGG
TGGAGGAAGGGAGGGTGTTCCGATGGCCCTGGGAGATGGCGGGGGATGAA
TTTGAGGATTAA
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protein sequence of NO13G02010.1

>NO13G02010.1-protein ID=NO13G02010.1-protein|Name=NO13G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=654bp
MMRRPQAISSLHLLLATLLLLDLASAFVLPPSLLSSSSPSSSSSSPSSSS
TSSIGRAISPTSDGLEENGDSLVSWTLDTVPDVTLLEAARREALEKDTEW
YQSIIGGSITPAPAAGMVAGPPSIEDGTADNSLPLRPLVELGYSRQEAVQ
LPEDIAGIIVEDQITRPVGALPREWLAVDVDADVAVTVGEDMDSKLAQKG
SSSAKGREKKILQQRFSRYAPPPSRPSTPSSKRAQRKRDATQYKKVYEQE
ALVDDDLGWGDEVEEEDNEDEEDEEDEMEREYRKGLRANVYRQEGVSDYE
DFGPTFPEQEPGLLPLLVDKVAERVRDSALLRPLLTERTFTSLLSQEADL
RLLVTGPWAAELMQNEFRWRLGLFRDYLKVEKKKPEAGLGDGRRTTKKGG
WKGWGYEDEVEKENGEVVSSFLEGEEEEEEEGDDEFFFDKAAKAWRRRRR
SGPTRQGGEGRRMGGDTDPYFYTSRSSSSSRSSSSNSRSSGSRPSIVEWV
GMEEEEEEEGDDVMDASWSAFDEDEDEQSYTRRATSPSSSRRSSSPSSSP
SVNRRRRRERKQEVRAGVGVDRRFMGQQEEEATNDRSGAWVWQNPSRTTG
GGREGGGGGGGGGEKGRRERGQADHARMRDGGRVEEGRVFRWPWEMAGDE
FED*
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mRNA from alignment at chr13:576745..578706+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02010.1 ID=NO13G02010.1|Name=NO13G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp|location=Sequence derived from alignment at chr13:576745..578706+ (Nannochloropsis oceanica)
ATGATGCGCCGGCCCCAGGCAATATCAAGCCTGCATCTGCTGCTGGCCAC
GCTGCTGCTTCTGGACCTTGCATCCGCCTTTGTGTTGCCGCCATCATTAT
TGTCATCATCGTCACCATCGTCATCATCGTCATCACCATCTTCATCGAGC
ACCAGCAGCATTGGGCGGGCCATCAGCCCAACTTCCGATGGCCTGGAGGA
GAATGGCGACTCGCTAGTAAGCTGGACCCTAGACACTGTGCCGGACGTGA
CCTTGCTTGAGGCGGCCCGGAGGGAGGCTCTGGAAAAGGACACGGAGTGG
TACCAATCCATTATTGGCGGGAGCATTACGCCTGCACCTGCGGCAGGAAT
GGTAGCAGGTCCACCAAGCATAGAGGACGGCACTGCCGACAATTCTCTCC
CTCTCAGACCCTTGGTAGAACTAGGGTATAGCCGGCAAGAAGCTGTGCAG
CTACCTGAGGACATTGCGGGCATTATTGTCGAGGATCAGATTACTCGGCC
GGTGGGGGCCTTGCCTCGGGAGTGGTTGGCTGTCGATGTGGATGCTGATG
TAGCAGTGACAGTCGGAGAAGATATGGACTCCAAGTTGGCGCAAAAGGGC
AGTAGCAGTGCAAAAGGAAGAGAAAAGAAGATTCTACAGCAACGCTTCTC
ACGATATGCCCCACCACCATCTCGCCCATCCACACCTAGCAGTAAACGCG
CCCAGCGAAAACGCGATGCGACTCAGTACAAGAAAGTGTACGAGCAAGAG
GCGCTGGTGGACGATGATTTAGGGTGGGGGGATGAGGTGGAGGAGGAGGA
CAATGAGGACGAGGAGGACGAGGAGGACGAGATGGAGCGGGAGTACAGGA
AGGGCCTCCGGGCGAATGTTTATCGACAAGAAGGCGTGAGCGATTACGAG
GACTTCGGACCTACTTTTCCAGAACAAGAGCCCGGTTTACTTCCTTTGTT
GGTAGATAAAGTAGCGGAGCGTGTGCGAGATAGTGCTTTGCTTCGGCCCT
TGCTGACAGAAAGGACGTTTACATCTCTCTTGAGCCAAGAAGCGGACTTG
CGGCTTTTGGTCACGGGGCCATGGGCGGCTGAGCTGATGCAGAATGAGTT
TAGGTGGCGCTTGGGACTGTTTCGAGATTATTTAAAGGTGGAAAAGAAGA
AGCCTGAAGCAGGGTTGGGAGACGGGAGGAGGACGACGAAGAAAGGGGGG
TGGAAAGGTTGGGGATATGAGGATGAGGTGGAAAAGGAGAATGGTGAGGT
AGTCAGTAGTTTTTTGGAGGGGGAGGAGGAGGAGGAGGAGGAGGGAGATG
ATGAATTTTTTTTCGATAAGGCCGCCAAGGCTTGGAGGCGGCGGCGACGC
AGTGGTCCCACTAGACAAGGAGGAGAAGGAAGAAGAATGGGAGGGGATAC
CGACCCCTATTTCTACACTTCGCGCAGCAGCAGCAGCAGTAGGAGTAGTA
GCAGCAACAGCCGCAGTAGTGGAAGTCGGCCGTCAATAGTGGAATGGGTG
GGAATGGAAGAGGAAGAGGAAGAGGAGGGCGATGACGTCATGGATGCAAG
CTGGAGTGCCTTTGACGAGGATGAGGACGAGCAGAGTTACACTCGCCGTG
CAACATCTCCCTCTTCCTCTCGCCGATCCTCTTCTCCCTCTTCTTCTCCT
TCTGTCAACCGCCGTCGGCGCCGGGAACGAAAGCAAGAGGTCCGAGCAGG
GGTTGGTGTGGATAGACGCTTTATGGGGCAGCAAGAAGAGGAGGCAACCA
ACGACCGCTCTGGTGCTTGGGTATGGCAAAACCCCTCACGCACCACGGGA
GGAGGACGAGAAGGAGGAGGTGGTGGAGGAGGAGGAGGCGAGAAGGGAAG
GAGAGAGAGGGGACAAGCGGATCATGCAAGAATGAGGGATGGAGGGAGGG
TGGAGGAAGGGAGGGTGTTCCGATGGCCCTGGGAGATGGCGGGGGATGAA
TTTGAGGATTAA
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Coding sequence (CDS) from alignment at chr13:576745..578706+

>NO13G02010.1 ID=NO13G02010.1|Name=NO13G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=1962bp|location=Sequence derived from alignment at chr13:576745..578706+ (Nannochloropsis oceanica)
ATGATGCGCCGGCCCCAGGCAATATCAAGCCTGCATCTGCTGCTGGCCAC
GCTGCTGCTTCTGGACCTTGCATCCGCCTTTGTGTTGCCGCCATCATTAT
TGTCATCATCGTCACCATCGTCATCATCGTCATCACCATCTTCATCGAGC
ACCAGCAGCATTGGGCGGGCCATCAGCCCAACTTCCGATGGCCTGGAGGA
GAATGGCGACTCGCTAGTAAGCTGGACCCTAGACACTGTGCCGGACGTGA
CCTTGCTTGAGGCGGCCCGGAGGGAGGCTCTGGAAAAGGACACGGAGTGG
TACCAATCCATTATTGGCGGGAGCATTACGCCTGCACCTGCGGCAGGAAT
GGTAGCAGGTCCACCAAGCATAGAGGACGGCACTGCCGACAATTCTCTCC
CTCTCAGACCCTTGGTAGAACTAGGGTATAGCCGGCAAGAAGCTGTGCAG
CTACCTGAGGACATTGCGGGCATTATTGTCGAGGATCAGATTACTCGGCC
GGTGGGGGCCTTGCCTCGGGAGTGGTTGGCTGTCGATGTGGATGCTGATG
TAGCAGTGACAGTCGGAGAAGATATGGACTCCAAGTTGGCGCAAAAGGGC
AGTAGCAGTGCAAAAGGAAGAGAAAAGAAGATTCTACAGCAACGCTTCTC
ACGATATGCCCCACCACCATCTCGCCCATCCACACCTAGCAGTAAACGCG
CCCAGCGAAAACGCGATGCGACTCAGTACAAGAAAGTGTACGAGCAAGAG
GCGCTGGTGGACGATGATTTAGGGTGGGGGGATGAGGTGGAGGAGGAGGA
CAATGAGGACGAGGAGGACGAGGAGGACGAGATGGAGCGGGAGTACAGGA
AGGGCCTCCGGGCGAATGTTTATCGACAAGAAGGCGTGAGCGATTACGAG
GACTTCGGACCTACTTTTCCAGAACAAGAGCCCGGTTTACTTCCTTTGTT
GGTAGATAAAGTAGCGGAGCGTGTGCGAGATAGTGCTTTGCTTCGGCCCT
TGCTGACAGAAAGGACGTTTACATCTCTCTTGAGCCAAGAAGCGGACTTG
CGGCTTTTGGTCACGGGGCCATGGGCGGCTGAGCTGATGCAGAATGAGTT
TAGGTGGCGCTTGGGACTGTTTCGAGATTATTTAAAGGTGGAAAAGAAGA
AGCCTGAAGCAGGGTTGGGAGACGGGAGGAGGACGACGAAGAAAGGGGGG
TGGAAAGGTTGGGGATATGAGGATGAGGTGGAAAAGGAGAATGGTGAGGT
AGTCAGTAGTTTTTTGGAGGGGGAGGAGGAGGAGGAGGAGGAGGGAGATG
ATGAATTTTTTTTCGATAAGGCCGCCAAGGCTTGGAGGCGGCGGCGACGC
AGTGGTCCCACTAGACAAGGAGGAGAAGGAAGAAGAATGGGAGGGGATAC
CGACCCCTATTTCTACACTTCGCGCAGCAGCAGCAGCAGTAGGAGTAGTA
GCAGCAACAGCCGCAGTAGTGGAAGTCGGCCGTCAATAGTGGAATGGGTG
GGAATGGAAGAGGAAGAGGAAGAGGAGGGCGATGACGTCATGGATGCAAG
CTGGAGTGCCTTTGACGAGGATGAGGACGAGCAGAGTTACACTCGCCGTG
CAACATCTCCCTCTTCCTCTCGCCGATCCTCTTCTCCCTCTTCTTCTCCT
TCTGTCAACCGCCGTCGGCGCCGGGAACGAAAGCAAGAGGTCCGAGCAGG
GGTTGGTGTGGATAGACGCTTTATGGGGCAGCAAGAAGAGGAGGCAACCA
ACGACCGCTCTGGTGCTTGGGTATGGCAAAACCCCTCACGCACCACGGGA
GGAGGACGAGAAGGAGGAGGTGGTGGAGGAGGAGGAGGCGAGAAGGGAAG
GAGAGAGAGGGGACAAGCGGATCATGCAAGAATGAGGGATGGAGGGAGGG
TGGAGGAAGGGAGGGTGTTCCGATGGCCCTGGGAGATGGCGGGGGATGAA
TTTGAGGATTAA
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Synonyms
Publications