NO13G02000, NO13G02000 (gene) Nannochloropsis oceanica

Overview
NameNO13G02000
Unique NameNO13G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length816
Alignment locationchr13:573989..574804 -

Link to JBrowse

Properties
Property NameValue
DescriptionGtp-binding protein obg
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:573989..574804 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Homology
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BLAST of NO13G02000 vs. NCBI_GenBank
Match: XP_005855655.1 (gtp-binding protein obg [Nannochloropsis gaditana CCMP526] >EKU20703.1 gtp-binding protein obg [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.6 bits (244), Expect = 3.200e-17
Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 0 
Query:  130 EDWAAFMEEYDALGAEEGEVAAGLASLG--SEGPLVVEEYRVEEDAEGAMRMVQSNKDRQQNYGKDSVKALLRETRKNGAMTEDDWFEFLRRAGIERAGGGNEHHGAFSEDSEDSGKNRKDPPPCDLGDRHAKA 262
            EDW++F+EEYDAL AE+G   A  AS    SE   +VEEYR+EEDA+G ++++ + ++  ++  K S   LL++ R+ GAMTEDDWFEFLRR G++R+   N+   AF ED  +   + K PPP   G    KA
Sbjct:   48 EDWSSFLEEYDALEAEDGMRVASDASASQVSEDAKIVEEYRLEEDADGNLQVMPTKREGLKSKIK-SAHNLLQKARQAGAMTEDDWFEFLRRTGMDRS-EENDFQSAFFEDVGEGEPSIKHPPPLRKGRHMRKA 179
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BLAST of NO13G02000 vs. NCBI_GenBank
Match: EWM21863.1 (gtp-binding protein obg [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 3.200e-17
Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 0 
Query:  130 EDWAAFMEEYDALGAEEGEVAAGLASLG--SEGPLVVEEYRVEEDAEGAMRMVQSNKDRQQNYGKDSVKALLRETRKNGAMTEDDWFEFLRRAGIERAGGGNEHHGAFSEDSEDSGKNRKDPPPCDLGDRHAKA 262
            EDW++F+EEYDAL AE+G   A  AS    SE   +VEEYR+EEDA+G ++++ + ++  ++  K S   LL++ R+ GAMTEDDWFEFLRR G++R+   N+   AF ED  +   + K PPP   G    KA
Sbjct:  119 EDWSSFLEEYDALEAEDGMRVASDASASQVSEDAKIVEEYRLEEDADGNLQVMPTKREGLKSKIK-SAHNLLQKARQAGAMTEDDWFEFLRRTGMDRS-EENDFQSAFFEDVGEGEPSIKHPPPLRKGRHMRKA 250
The following BLAST results are available for this feature:
BLAST of NO13G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855655.13.200e-1745.52gtp-binding protein obg [Nannochloropsis gaditana ... [more]
EWM21863.13.200e-1745.52gtp-binding protein obg [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G02000.1NO13G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G02000.1NO13G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G02000 ID=NO13G02000|Name=NO13G02000|organism=Nannochloropsis oceanica|type=gene|length=816bp
ATGGCGCGCCTTCTCCTGGCTGTTTTGCGGCCCCAGTTCAGGTTGCGGCG
CCTTCACGGTCGTTCTTTCGTCCTTCACCGGGTCCTTCCAGTTGAAGTGG
CCTTCCCTTCAATCTCCTCCTCGACCTCGACCTCGACCTCGACCTCGACC
TCGTCCAGAGCCCAGAGGCAGTCGCCACGCCGTGGAATGATGACGATAGT
ACGAAGAGAGGAAGCGGGAAAAGGTGGTGGGAGCACAGATGGGACCAGTT
CCAGCAGGCCCGGGCGTCGAAAAATGCGGCCGCTCCCACCCCTGCCATCG
TCGGAGTCGTCATCGAACAAAAAGGAGGCGACGGCCAGGACGTCAGCAAG
CAGTCAAGACATCATTCTTTATGAAGAAGAGGATACAGAGGACTGGGCGG
CATTTATGGAGGAGTACGATGCGCTGGGAGCAGAAGAAGGGGAGGTAGCA
GCAGGGCTTGCCTCTCTTGGAAGTGAAGGTCCGCTGGTGGTGGAGGAGTA
TCGAGTGGAAGAGGACGCGGAAGGGGCCATGCGCATGGTGCAAAGCAATA
AAGACAGGCAGCAGAATTATGGCAAAGATTCCGTGAAAGCCTTGTTGCGG
GAAACCCGTAAGAACGGCGCTATGACGGAGGACGATTGGTTCGAGTTCTT
GCGCCGGGCGGGGATAGAACGTGCAGGGGGAGGCAACGAACATCATGGCG
CTTTCTCAGAGGACAGCGAGGATAGTGGAAAGAATAGGAAAGATCCCCCC
CCCTGCGACTTGGGCGACAGACACGCAAAGGCCCGCCTAAATTTGTGGAC
CGGATTAGTGTGGTAG
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protein sequence of NO13G02000.1

>NO13G02000.1-protein ID=NO13G02000.1-protein|Name=NO13G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MARLLLAVLRPQFRLRRLHGRSFVLHRVLPVEVAFPSISSSTSTSTSTST
SSRAQRQSPRRGMMTIVRREEAGKGGGSTDGTSSSRPGRRKMRPLPPLPS
SESSSNKKEATARTSASSQDIILYEEEDTEDWAAFMEEYDALGAEEGEVA
AGLASLGSEGPLVVEEYRVEEDAEGAMRMVQSNKDRQQNYGKDSVKALLR
ETRKNGAMTEDDWFEFLRRAGIERAGGGNEHHGAFSEDSEDSGKNRKDPP
PCDLGDRHAKARLNLWTGLVW*
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Synonyms
Publications