NO13G02000.1, NO13G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02000.1
Unique NameNO13G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length816
Alignment locationchr13:573989..574804 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:573989..574804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02000.1 vs.
Match: EWM21863.1 (gtp-binding protein obg [Nannochloropsis gaditana])

HSP 1 Score: 122.9 bits (307), Expect = 1.600e-24
Identity = 84/186 (45.16%), Postives = 115/186 (61.83%), Query Frame = 0 
Query:   78 STDGTSSSRPGRRKMRPLPPLPSSESSSNKKEATARTSASSQDIILYEEEDTEDWAAFMEEYDALGAEEGEVAAGLASLG--SEGPLVVEEYRVEEDAEGAMRMVQSNKDRQQNYGKDSVKALLRETRKNGAMTEDDWFEFLRRAGIERAGGGNEHHGAFSEDSEDSGKNRKDPPPCDLGDRHAKA 262
            +T   +S + GRRK RPL  L  S    NKK A        QD+++YEEEDTEDW++F+EEYDAL AE+G   A  AS    SE   +VEEYR+EEDA+G ++++ + ++  ++  K S   LL++ R+ GAMTEDDWFEFLRR G++R+   N+   AF ED  +   + K PPP   G    KA
Sbjct:   77 ATVKNNSGKSGRRKTRPLEKLAPS---GNKKPA-------GQDMLVYEEEDTEDWSSFLEEYDALEAEDGMRVASDASASQVSEDAKIVEEYRLEEDADGNLQVMPTKREGLKSKIK-SAHNLLQKARQAGAMTEDDWFEFLRRTGMDRS-EENDFQSAFFEDVGEGEPSIKHPPPLRKGRHMRKA 250
The following BLAST results are available for this feature:
BLAST of NO13G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21863.11.600e-2445.16gtp-binding protein obg [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02000NO13G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02000.1NO13G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02000.1.cds1NO13G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02000.1 ID=NO13G02000.1|Name=NO13G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=816bp
ATGGCGCGCCTTCTCCTGGCTGTTTTGCGGCCCCAGTTCAGGTTGCGGCG
CCTTCACGGTCGTTCTTTCGTCCTTCACCGGGTCCTTCCAGTTGAAGTGG
CCTTCCCTTCAATCTCCTCCTCGACCTCGACCTCGACCTCGACCTCGACC
TCGTCCAGAGCCCAGAGGCAGTCGCCACGCCGTGGAATGATGACGATAGT
ACGAAGAGAGGAAGCGGGAAAAGGTGGTGGGAGCACAGATGGGACCAGTT
CCAGCAGGCCCGGGCGTCGAAAAATGCGGCCGCTCCCACCCCTGCCATCG
TCGGAGTCGTCATCGAACAAAAAGGAGGCGACGGCCAGGACGTCAGCAAG
CAGTCAAGACATCATTCTTTATGAAGAAGAGGATACAGAGGACTGGGCGG
CATTTATGGAGGAGTACGATGCGCTGGGAGCAGAAGAAGGGGAGGTAGCA
GCAGGGCTTGCCTCTCTTGGAAGTGAAGGTCCGCTGGTGGTGGAGGAGTA
TCGAGTGGAAGAGGACGCGGAAGGGGCCATGCGCATGGTGCAAAGCAATA
AAGACAGGCAGCAGAATTATGGCAAAGATTCCGTGAAAGCCTTGTTGCGG
GAAACCCGTAAGAACGGCGCTATGACGGAGGACGATTGGTTCGAGTTCTT
GCGCCGGGCGGGGATAGAACGTGCAGGGGGAGGCAACGAACATCATGGCG
CTTTCTCAGAGGACAGCGAGGATAGTGGAAAGAATAGGAAAGATCCCCCC
CCCTGCGACTTGGGCGACAGACACGCAAAGGCCCGCCTAAATTTGTGGAC
CGGATTAGTGTGGTAG
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protein sequence of NO13G02000.1

>NO13G02000.1-protein ID=NO13G02000.1-protein|Name=NO13G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MARLLLAVLRPQFRLRRLHGRSFVLHRVLPVEVAFPSISSSTSTSTSTST
SSRAQRQSPRRGMMTIVRREEAGKGGGSTDGTSSSRPGRRKMRPLPPLPS
SESSSNKKEATARTSASSQDIILYEEEDTEDWAAFMEEYDALGAEEGEVA
AGLASLGSEGPLVVEEYRVEEDAEGAMRMVQSNKDRQQNYGKDSVKALLR
ETRKNGAMTEDDWFEFLRRAGIERAGGGNEHHGAFSEDSEDSGKNRKDPP
PCDLGDRHAKARLNLWTGLVW*
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mRNA from alignment at chr13:573989..574804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02000.1 ID=NO13G02000.1|Name=NO13G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=816bp|location=Sequence derived from alignment at chr13:573989..574804- (Nannochloropsis oceanica)
ATGGCGCGCCTTCTCCTGGCTGTTTTGCGGCCCCAGTTCAGGTTGCGGCG
CCTTCACGGTCGTTCTTTCGTCCTTCACCGGGTCCTTCCAGTTGAAGTGG
CCTTCCCTTCAATCTCCTCCTCGACCTCGACCTCGACCTCGACCTCGACC
TCGTCCAGAGCCCAGAGGCAGTCGCCACGCCGTGGAATGATGACGATAGT
ACGAAGAGAGGAAGCGGGAAAAGGTGGTGGGAGCACAGATGGGACCAGTT
CCAGCAGGCCCGGGCGTCGAAAAATGCGGCCGCTCCCACCCCTGCCATCG
TCGGAGTCGTCATCGAACAAAAAGGAGGCGACGGCCAGGACGTCAGCAAG
CAGTCAAGACATCATTCTTTATGAAGAAGAGGATACAGAGGACTGGGCGG
CATTTATGGAGGAGTACGATGCGCTGGGAGCAGAAGAAGGGGAGGTAGCA
GCAGGGCTTGCCTCTCTTGGAAGTGAAGGTCCGCTGGTGGTGGAGGAGTA
TCGAGTGGAAGAGGACGCGGAAGGGGCCATGCGCATGGTGCAAAGCAATA
AAGACAGGCAGCAGAATTATGGCAAAGATTCCGTGAAAGCCTTGTTGCGG
GAAACCCGTAAGAACGGCGCTATGACGGAGGACGATTGGTTCGAGTTCTT
GCGCCGGGCGGGGATAGAACGTGCAGGGGGAGGCAACGAACATCATGGCG
CTTTCTCAGAGGACAGCGAGGATAGTGGAAAGAATAGGAAAGATCCCCCC
CCCTGCGACTTGGGCGACAGACACGCAAAGGCCCGCCTAAATTTGTGGAC
CGGATTAGTGTGGTAG
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Coding sequence (CDS) from alignment at chr13:573989..574804-

>NO13G02000.1 ID=NO13G02000.1|Name=NO13G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr13:573989..574804- (Nannochloropsis oceanica)
ATGGCGCGCCTTCTCCTGGCTGTTTTGCGGCCCCAGTTCAGGTTGCGGCG
CCTTCACGGTCGTTCTTTCGTCCTTCACCGGGTCCTTCCAGTTGAAGTGG
CCTTCCCTTCAATCTCCTCCTCGACCTCGACCTCGACCTCGACCTCGACC
TCGTCCAGAGCCCAGAGGCAGTCGCCACGCCGTGGAATGATGACGATAGT
ACGAAGAGAGGAAGCGGGAAAAGGTGGTGGGAGCACAGATGGGACCAGTT
CCAGCAGGCCCGGGCGTCGAAAAATGCGGCCGCTCCCACCCCTGCCATCG
TCGGAGTCGTCATCGAACAAAAAGGAGGCGACGGCCAGGACGTCAGCAAG
CAGTCAAGACATCATTCTTTATGAAGAAGAGGATACAGAGGACTGGGCGG
CATTTATGGAGGAGTACGATGCGCTGGGAGCAGAAGAAGGGGAGGTAGCA
GCAGGGCTTGCCTCTCTTGGAAGTGAAGGTCCGCTGGTGGTGGAGGAGTA
TCGAGTGGAAGAGGACGCGGAAGGGGCCATGCGCATGGTGCAAAGCAATA
AAGACAGGCAGCAGAATTATGGCAAAGATTCCGTGAAAGCCTTGTTGCGG
GAAACCCGTAAGAACGGCGCTATGACGGAGGACGATTGGTTCGAGTTCTT
GCGCCGGGCGGGGATAGAACGTGCAGGGGGAGGCAACGAACATCATGGCG
CTTTCTCAGAGGACAGCGAGGATAGTGGAAAGAATAGGAAAGATCCCCCC
CCCTGCGACTTGGGCGACAGACACGCAAAGGCCCGCCTAAATTTGTGGAC
CGGATTAGTGTGGTAG
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Synonyms
Publications