NO13G01950, NO13G01950 (gene) Nannochloropsis oceanica

Overview
NameNO13G01950
Unique NameNO13G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr13:566014..566895 -

Link to JBrowse

Properties
Property NameValue
DescriptionKelch-like protein diablo
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:566014..566895 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
IPR006652Kelch_1
Homology
[Close]
BLAST of NO13G01950 vs. NCBI_GenBank
Match: EWM21870.1 (kelch-like protein diablo [Nannochloropsis gaditana])

HSP 1 Score: 328.6 bits (841), Expect = 2.000e-86
Identity = 161/246 (65.45%), Postives = 182/246 (73.98%), Query Frame = 0 
Query:   49 RREAQWNKKQELQTARCFLASITDLQGRLYALGGGESIWQGARVLNTTEILDDPLAS-ACAWRMGPAMMEARCGLSAALDTHGHIYVAGGYGGGTRYSSSVEVLRVGDDSEGATRGWLADAVPPMQVARTGFGLAFGPDRGLVAVGGSPDGLHSHRTAERYDDREGRWRWLPRMMTPRGYCAVAFGTSGLLYVVGGEAGDANENARNPVVEIFDPRADRWRAWVGPGDPGKDGMDRVDLGLVWALV 294
            RRE  W   Q L+TARCFLAS+TDLQGRLYALGGGESIWQGARVL +TEI+++PLA     WR GP M++ARCGL+AA    G IY AGGYGGGT Y SSVEVLR G DSEGATR WL D V PM VARTGFGLAFGPD  L AVGGSPDGLHSHR  E+YD REGRWRWLP M+TPRGYC+              +AG  N++A   VVE++DPRAD+WR +   G     G+DRVDLG+VWALV
Sbjct:  238 RRERMWTSLQPLETARCFLASVTDLQGRLYALGGGESIWQGARVLKSTEIMEEPLARLTMPWRPGPCMVKARCGLAAAASITGDIYAAGGYGGGTTYLSSVEVLRAG-DSEGATREWLVDVVRPMHVARTGFGLAFGPDGCLFAVGGSPDGLHSHRRGEKYDVREGRWRWLPLMITPRGYCSAXXXXXXXXXXXXXQAGVTNDDAITSVVEVYDPRADKWRQFKSFGGENDSGVDRVDLGVVWALV 482
[Close]
BLAST of NO13G01950 vs. NCBI_GenBank
Match: OLP99238.1 (Actin-binding protein IPP [Symbiodinium microadriaticum])

HSP 1 Score: 85.5 bits (210), Expect = 3.000e-13
Identity = 50/136 (36.76%), Postives = 64/136 (47.06%), Query Frame = 0 
Query:   79 ALGGGESIWQGARVLNTTEILDDPLASACAWRMGPAMMEARCGLSAALDTHGHIYVAGGYGGGTRYSSSVEVLRVGDDSEGATRGWLADAVPPMQVARTGFGLAFGPDRGLVAVGGSPDGLHSHRTAERYDDREGR 215
            A+GGG S++  A    + E+L     +A  W+ GP +   RC     + + GH+Y   GY G   Y  SVE       SEG  RGW A   P +  AR G    FGPD  +  +GG  D   S  T E  D REGR
Sbjct:   91 AVGGGSSMFTAAEAFRSVEVL---RTAATKWQYGPTLQRPRCAAGVCVSSAGHVYAISGYAGNDCYEESVE--WADGSSEGLLRGWFAG--PALSQARAGCAACFGPDGRVWVLGGGCDESASLDTVECLDPREGR 219
[Close]
BLAST of NO13G01950 vs. NCBI_GenBank
Match: XP_005793548.1 (hypothetical protein EMIHUDRAFT_199313 [Emiliania huxleyi CCMP1516] >EOD41119.1 hypothetical protein EMIHUDRAFT_199313 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 82.4 bits (202), Expect = 2.500e-12
Identity = 58/160 (36.25%), Postives = 72/160 (45.00%), Query Frame = 0 
Query:   54 WNKKQELQTARCFLASITDLQGRLYALGGGESIWQGARVLNTTEILDDPLASACAWRMGPAMMEARCGLSAALDTHGHIYVA-GGYGGGTRYSSSVEVLRVGDDSEGATRGWLADAVPPMQVARTGFGLAFGPDRGLVAVGGSPDGLHSHRTAERYDDRE 213
            W +   L    CF A+  D  GRL+  GGG     G                  AWR    ++  RCGL+ A D     + A GGY GGTRY S+ E     D + G      +  +P M VAR+G G A GPD  L  VGGS DG  S R+A+    RE
Sbjct:  165 WKRLTPLPRRLCFGAAQMDASGRLWFAGGGVLHLDGG-----------------AWREAGELVSPRCGLAVAADARSSSFFALGGYAGGTRYLSTAEAF---DTATGK-----STPIPSMGVARSGPGAAVGPDGALYVVGGSSDGCVSLRSAQTTPRRE 299
[Close]
BLAST of NO13G01950 vs. NCBI_GenBank
Match: XP_005776950.1 (hypothetical protein EMIHUDRAFT_206488 [Emiliania huxleyi CCMP1516] >EOD24521.1 hypothetical protein EMIHUDRAFT_206488 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.4 bits (176), Expect = 2.600e-9
Identity = 51/143 (35.66%), Postives = 63/143 (44.06%), Query Frame = 0 
Query:   54 WNKKQELQTARCFLASITDLQGRLYALGGGESIWQGARVLNTTEILDDPLASACAWRMGPAMMEARCGLSAALDTHGHIYVA-GGYGGGTRYSSSVEVLRVGDDSEGATRGWLADAVPPMQVARTGFGLAFGPDRGLVAVGGS 196
            W +   L    CF A+  D  GRL+  GGG     G                  AWR    ++  RCGL+ A D     + A GGY GGTRY S+ E     D + G      +  +P M VAR+G G A GPD  L  VGGS
Sbjct:  164 WKRLTPLPRRLCFGAAQMDASGRLWFAGGGVLHLDGG-----------------AWREAGELVSPRCGLAVAADARSSSFFALGGYAGGTRYLSTAEAF---DTATGK-----STPIPSMGVARSGPGAAVGPDGALYVVGGS 281
The following BLAST results are available for this feature:
BLAST of NO13G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21870.12.000e-8665.45kelch-like protein diablo [Nannochloropsis gaditan... [more]
OLP99238.13.000e-1336.76Actin-binding protein IPP [Symbiodinium microadria... [more]
XP_005793548.12.500e-1236.25hypothetical protein EMIHUDRAFT_199313 [Emiliania ... [more]
XP_005776950.12.600e-935.66hypothetical protein EMIHUDRAFT_206488 [Emiliania ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL134nonsL134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL131nonsL131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR026ncniR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR070ngnoR070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR069ngnoR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001699NSK001699Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO13G01950.1NO13G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|113635gene_6811Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100169g13gene8573Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO13G01950.1NO13G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO13G01950 ID=NO13G01950|Name=NO13G01950|organism=Nannochloropsis oceanica|type=gene|length=882bp
ATGATCCCGAGGATGCAGACTTTGACCATAGTTCATAACGCGACGACAAT
GGTGACCAGTAGCAGCAGCAGCACGATCAGCGGCGGGAGCAGCAGCAACA
GCAACGAACGAACAACTCCTCCGACCATCGCCACTACCCTCTGTCGACGC
GAGGCACAGTGGAATAAAAAGCAAGAACTTCAGACTGCCCGTTGCTTTCT
CGCTTCCATTACGGACCTTCAAGGCCGCTTGTATGCCCTGGGAGGAGGAG
AGAGCATCTGGCAAGGCGCACGTGTTTTAAATACGACTGAAATTCTCGAT
GACCCCCTTGCCTCTGCCTGTGCCTGGCGAATGGGCCCCGCCATGATGGA
AGCTCGTTGCGGCTTATCAGCGGCGTTGGACACGCATGGTCATATTTATG
TTGCGGGAGGATATGGAGGTGGGACGCGGTATTCATCTTCGGTGGAAGTG
CTTCGTGTGGGTGATGATTCGGAGGGGGCAACGCGCGGATGGCTAGCTGA
TGCGGTGCCACCGATGCAAGTGGCACGGACAGGGTTTGGCTTGGCATTCG
GTCCGGATCGTGGTCTGGTGGCGGTGGGCGGGTCGCCAGACGGTTTGCAC
AGCCATCGGACAGCAGAGCGGTACGACGACCGGGAAGGCCGTTGGAGGTG
GTTGCCGAGAATGATGACGCCTCGCGGTTACTGCGCGGTGGCATTTGGGA
CGTCGGGGTTGCTCTATGTGGTGGGAGGAGAGGCGGGCGACGCGAACGAA
AATGCCAGGAATCCCGTGGTCGAAATTTTTGATCCACGGGCAGATCGGTG
GCGGGCTTGGGTGGGGCCAGGGGATCCGGGGAAGGATGGGATGGACCGGG
TAGATTTGGGGTTGGTCTGGGCGCTGGTGTGA
back to top

protein sequence of NO13G01950.1

>NO13G01950.1-protein ID=NO13G01950.1-protein|Name=NO13G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MIPRMQTLTIVHNATTMVTSSSSSTISGGSSSNSNERTTPPTIATTLCRR
EAQWNKKQELQTARCFLASITDLQGRLYALGGGESIWQGARVLNTTEILD
DPLASACAWRMGPAMMEARCGLSAALDTHGHIYVAGGYGGGTRYSSSVEV
LRVGDDSEGATRGWLADAVPPMQVARTGFGLAFGPDRGLVAVGGSPDGLH
SHRTAERYDDREGRWRWLPRMMTPRGYCAVAFGTSGLLYVVGGEAGDANE
NARNPVVEIFDPRADRWRAWVGPGDPGKDGMDRVDLGLVWALV*
back to top
Synonyms
Publications